Wall clock time and date at job start Mon Mar 30 2020 06:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35653 * 117.00204 * 2 1 4 4 C 1.37982 * 120.10105 * 359.97438 * 3 2 1 5 5 C 1.40682 * 119.73923 * 179.97438 * 4 3 2 6 6 C 1.41066 * 120.03355 * 180.02562 * 5 4 3 7 7 H 1.08000 * 120.00182 * 28.83071 * 6 5 4 8 8 C 1.40285 * 120.00296 * 208.83791 * 6 5 4 9 9 N 1.30611 * 119.99909 * 11.65035 * 8 6 5 10 10 Si 1.86801 * 120.00426 * 191.64963 * 8 6 5 11 11 H 1.48504 * 109.46894 * 89.99677 * 10 8 6 12 12 H 1.48494 * 109.47693 * 209.99793 * 10 8 6 13 13 H 1.48502 * 109.46816 * 330.00182 * 10 8 6 14 14 C 1.41078 * 119.93697 * 0.02562 * 5 4 3 15 15 C 1.36007 * 120.20247 * 0.02562 * 14 5 4 16 16 C 1.40423 * 120.26450 * 359.67990 * 15 14 5 17 17 C 1.46556 * 119.96940 * 180.29678 * 16 15 14 18 18 O 1.21349 * 120.00458 * 283.23006 * 17 16 15 19 19 C 1.50704 * 119.99720 * 103.24030 * 17 16 15 20 20 H 1.08996 * 109.47275 * 152.88189 * 19 17 16 21 21 C 1.53009 * 109.46487 * 272.87245 * 19 17 16 22 22 Cl 1.80296 * 109.47430 * 32.86938 * 19 17 16 23 23 H 1.08996 * 109.46871 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46536 * 59.99933 * 1 2 3 25 25 H 1.08995 * 109.47119 * 299.99921 * 1 2 3 26 26 H 1.07998 * 120.12746 * 359.97438 * 4 3 2 27 27 H 0.97004 * 120.00042 * 180.02562 * 9 8 6 28 28 H 1.07999 * 119.89415 * 179.97438 * 14 5 4 29 29 H 1.08003 * 119.86990 * 179.97438 * 15 14 5 30 30 H 1.08997 * 109.47074 * 60.00743 * 21 19 17 31 31 H 1.09004 * 109.46508 * 179.97438 * 21 19 17 32 32 H 1.08998 * 109.47176 * 299.99999 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2955 2.3672 -0.0005 5 6 1.9421 3.6166 0.0000 6 6 1.1820 4.8050 0.0000 7 1 0.2006 4.8184 0.4507 8 6 1.7008 5.9695 -0.5855 9 7 2.7754 5.9056 -1.3251 10 14 0.8548 7.6116 -0.3073 11 1 1.4236 8.2632 0.8998 12 1 1.0689 8.4853 -1.4887 13 1 -0.6007 7.3916 -0.1116 14 6 3.3515 3.6800 0.0006 15 6 4.0877 2.5364 0.0000 16 6 3.4511 1.2848 0.0057 17 6 4.2509 0.0567 0.0117 18 8 4.7838 -0.3254 -1.0094 19 6 4.4111 -0.7319 1.2859 20 1 4.5879 -1.7800 1.0448 21 6 5.5995 -0.1837 2.0787 22 17 2.9107 -0.5872 2.2751 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 0.2168 2.3150 -0.0014 27 1 3.1343 6.7109 -1.7297 28 1 3.8472 4.6395 0.0006 29 1 5.1664 2.5912 0.0000 30 1 5.4228 0.8645 2.3199 31 1 5.7151 -0.7537 3.0006 32 1 6.5066 -0.2711 1.4807 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396064152.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:25 Heat of formation + Delta-G solvation = -71.261663 kcal Electronic energy + Delta-G solvation = -18291.155580 eV Core-core repulsion = 15242.686076 eV Total energy + Delta-G solvation = -3048.469504 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -39.38812 -38.13301 -36.29762 -35.62992 -33.59750 -32.15528 -30.22953 -28.83752 -26.76137 -26.12157 -24.11092 -21.62224 -20.71684 -19.07840 -17.94926 -16.22628 -15.64913 -15.60649 -15.50503 -14.84218 -14.78267 -14.05460 -13.83982 -13.37403 -12.87435 -12.70827 -12.25750 -12.10416 -11.93407 -11.62726 -11.45674 -11.32789 -11.25485 -10.88558 -10.75534 -10.37654 -10.21340 -10.08128 -9.84512 -9.69211 -9.29314 -8.83636 -7.63032 -7.00997 -6.88565 -4.59315 2.15029 2.53652 2.83899 2.98108 3.01188 3.02732 3.08345 3.79751 4.17554 4.39499 4.58212 5.02702 5.06390 5.49993 5.61130 5.68441 5.75404 5.76825 5.94531 6.09036 6.17239 6.25332 6.70435 6.75567 6.85155 6.98908 7.13170 7.52480 7.78159 7.84212 8.00113 8.05969 8.24297 8.49596 8.70134 8.82635 10.00727 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.025425 B = 0.006128 C = 0.005592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.031998 B = 4568.352622 C = 5005.517962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.322 6.322 3 C 0.197 3.803 4 C -0.315 4.315 5 C 0.152 3.848 6 C -0.452 4.452 7 H 0.081 0.919 8 C 0.075 3.925 9 N -0.782 5.782 10 Si 0.914 3.086 11 H -0.266 1.266 12 H -0.276 1.276 13 H -0.261 1.261 14 C -0.182 4.182 15 C -0.041 4.041 16 C -0.317 4.317 17 C 0.443 3.557 18 O -0.464 6.464 19 C -0.049 4.049 20 H 0.110 0.890 21 C -0.149 4.149 22 Cl -0.145 7.145 23 H 0.083 0.917 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.104 0.896 27 H 0.285 0.715 28 H 0.123 0.877 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.478 -6.106 5.436 8.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.236 6.236 3 C 0.153 3.847 4 C -0.335 4.335 5 C 0.149 3.851 6 C -0.481 4.481 7 H 0.099 0.901 8 C -0.145 4.145 9 N -0.405 5.405 10 Si 0.738 3.262 11 H -0.191 1.191 12 H -0.201 1.201 13 H -0.185 1.185 14 C -0.201 4.201 15 C -0.059 4.059 16 C -0.320 4.320 17 C 0.320 3.680 18 O -0.338 6.338 19 C -0.094 4.094 20 H 0.128 0.872 21 C -0.206 4.206 22 Cl -0.118 7.118 23 H 0.102 0.898 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.122 0.878 27 H 0.096 0.904 28 H 0.141 0.859 29 H 0.113 0.887 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.886 -6.336 4.809 8.004 hybrid contribution -0.724 0.929 0.114 1.183 sum 0.162 -5.407 4.923 7.314 Atomic orbital electron populations 1.22782 0.80066 1.01932 1.01043 1.85929 1.20083 1.28595 1.88990 1.18422 0.89966 0.83241 0.93120 1.20925 0.97801 0.91921 1.22874 1.17467 0.91977 0.91427 0.84231 1.19722 1.02862 0.93510 1.31978 0.90074 1.26039 0.94459 1.01285 0.92746 1.69713 1.18564 1.31183 1.21089 0.86209 0.80669 0.80399 0.78917 1.19055 1.20082 1.18466 1.20911 0.94075 0.96984 1.08154 1.20068 0.97187 0.90730 0.97960 1.18363 0.90224 0.93180 1.30230 1.22149 0.75344 0.83842 0.86710 1.90497 1.41085 1.67899 1.34326 1.24628 0.88235 1.02640 0.93900 0.87198 1.21968 0.95284 1.03320 1.00021 1.98723 1.41293 1.98804 1.72993 0.89847 0.93318 0.93316 0.87806 0.90415 0.85941 0.88672 0.90282 0.90785 0.90879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 9.81 101.05 0.99 1.60 16 2 O -0.32 -6.53 8.02 -18.66 -0.15 -6.68 16 3 C 0.20 4.49 5.74 -38.70 -0.22 4.27 16 4 C -0.31 -7.52 8.76 -38.75 -0.34 -7.85 16 5 C 0.15 3.90 5.55 -106.83 -0.59 3.30 16 6 C -0.45 -11.39 9.05 -37.74 -0.34 -11.73 16 7 H 0.08 1.95 7.88 -52.49 -0.41 1.54 16 8 C 0.07 1.78 5.23 -17.30 -0.09 1.68 16 9 N -0.78 -19.27 10.87 55.56 0.60 -18.67 16 10 Si 0.91 17.69 29.58 -169.99 -5.03 12.66 16 11 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 12 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 13 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 14 C -0.18 -4.55 8.58 -39.31 -0.34 -4.89 16 15 C -0.04 -0.94 9.71 -39.56 -0.38 -1.32 16 16 C -0.32 -7.19 4.99 -104.74 -0.52 -7.71 16 17 C 0.44 9.05 5.28 -30.95 -0.16 8.88 16 18 O -0.46 -10.48 17.86 5.50 0.10 -10.39 16 19 C -0.05 -0.79 3.75 -27.88 -0.10 -0.89 16 20 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 21 C -0.15 -1.94 9.30 37.16 0.35 -1.60 16 22 Cl -0.14 -2.44 24.98 -51.86 -1.30 -3.73 16 23 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.05 0.78 7.66 -51.93 -0.40 0.38 16 25 H 0.05 0.76 7.66 -51.93 -0.40 0.36 16 26 H 0.10 2.31 6.29 -52.49 -0.33 1.98 16 27 H 0.28 6.35 8.29 -40.82 -0.34 6.01 16 28 H 0.12 3.12 6.23 -52.49 -0.33 2.80 16 29 H 0.10 1.98 8.06 -52.48 -0.42 1.56 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 291.15 15.07 4.39 4.39 Total: -1.00 -28.15 291.15 -6.68 -34.83 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -3.54 Total: 3.84 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -1.76 Total: -16.26 kcal Atomic # 7 Polarization: -19.27 SS G_CDS: 0.60 Total: -18.67 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.05 Total: -17.06 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.03 Total: 12.66 kcal Atomic # 17 Polarization: -2.44 SS G_CDS: -1.30 Total: -3.73 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.15 -6.68 -34.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396064152.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.430 kcal (2) G-P(sol) polarization free energy of solvation -28.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds