Wall clock time and date at job start Mon Mar 30 2020 06:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35652 * 116.99878 * 2 1 4 4 C 1.37983 * 120.10044 * 359.73086 * 3 2 1 5 5 C 1.40686 * 119.73198 * 179.77451 * 4 3 2 6 6 C 1.41073 * 120.02963 * 180.23273 * 5 4 3 7 7 H 1.07998 * 120.00184 * 25.01330 * 6 5 4 8 8 C 1.40288 * 119.99750 * 205.02359 * 6 5 4 9 9 N 1.30599 * 120.00366 * 17.90747 * 8 6 5 10 10 Si 1.86801 * 119.99801 * 197.90900 * 8 6 5 11 11 H 1.48506 * 109.47089 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47183 * 119.99778 * 10 8 6 13 13 H 1.48504 * 109.47090 * 239.99976 * 10 8 6 14 14 C 1.41065 * 119.94070 * 0.47090 * 5 4 3 15 15 C 1.36015 * 120.20272 * 359.77960 * 14 5 4 16 16 C 1.40415 * 120.26533 * 359.97438 * 15 14 5 17 17 C 1.46555 * 119.97126 * 179.97438 * 16 15 14 18 18 O 1.21346 * 120.00173 * 180.02562 * 17 16 15 19 19 C 1.50705 * 120.00105 * 0.02562 * 17 16 15 20 20 H 1.09001 * 109.46613 * 34.99906 * 19 17 16 21 21 C 1.53002 * 109.46954 * 275.00103 * 19 17 16 22 22 Cl 1.80296 * 109.47122 * 155.00219 * 19 17 16 23 23 H 1.09007 * 109.47100 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47320 * 59.99674 * 1 2 3 25 25 H 1.09003 * 109.46810 * 299.99621 * 1 2 3 26 26 H 1.07995 * 120.13103 * 359.96811 * 4 3 2 27 27 H 0.97003 * 120.00529 * 180.02562 * 9 8 6 28 28 H 1.08000 * 119.89773 * 179.75309 * 14 5 4 29 29 H 1.08010 * 119.86718 * 179.97438 * 15 14 5 30 30 H 1.09004 * 109.46821 * 60.00129 * 21 19 17 31 31 H 1.08998 * 109.46712 * 179.97438 * 21 19 17 32 32 H 1.08993 * 109.47423 * 300.00210 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2953 2.3672 -0.0056 5 6 1.9420 3.6166 -0.0008 6 6 1.1819 4.8050 -0.0015 7 1 0.1754 4.8025 0.3901 8 6 1.7334 5.9900 -0.5110 9 7 2.7812 5.9410 -1.2890 10 14 0.9689 7.6382 -0.0767 11 1 -0.2003 7.4224 0.8130 12 1 1.9731 8.4813 0.6204 13 1 0.5259 8.3210 -1.3188 14 6 3.3513 3.6800 -0.0002 15 6 4.0876 2.5364 0.0001 16 6 3.4511 1.2848 0.0005 17 6 4.2508 0.0567 0.0003 18 8 3.7013 -1.0252 0.0001 19 6 5.7557 0.1374 0.0002 20 1 6.0734 0.9974 0.5898 21 6 6.2581 0.2905 -1.4368 22 17 6.4384 -1.3689 0.7183 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 0.5138 0.8901 26 1 0.2167 2.3150 -0.0105 27 1 3.1628 6.7604 -1.6411 28 1 3.8470 4.6395 -0.0006 29 1 5.1663 2.5912 0.0001 30 1 5.8454 1.2012 -1.8709 31 1 7.3465 0.3493 -1.4368 32 1 5.9404 -0.5694 -2.0264 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396064156.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:29 Heat of formation + Delta-G solvation = -78.632768 kcal Electronic energy + Delta-G solvation = -18034.956341 eV Core-core repulsion = 14986.167202 eV Total energy + Delta-G solvation = -3048.789139 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.34408 -37.81052 -36.47221 -35.52079 -33.88268 -32.25877 -30.23326 -28.86029 -26.81247 -26.20689 -23.95902 -21.75626 -20.75674 -18.87319 -18.13990 -16.38923 -15.70983 -15.56033 -15.10483 -14.93130 -14.38432 -14.22797 -13.76356 -13.52070 -12.81426 -12.60971 -12.23689 -12.15442 -11.99101 -11.63280 -11.45406 -11.37580 -11.28518 -10.93950 -10.76413 -10.49238 -10.28362 -10.12525 -10.06989 -9.84553 -9.40674 -8.56688 -7.85082 -7.23463 -7.12697 -4.80875 1.91022 2.48182 2.78654 2.86099 2.91459 2.91907 3.48659 3.62310 4.16899 4.33165 4.67537 5.16449 5.26341 5.40345 5.67667 5.75160 5.76657 5.87066 5.91911 6.02093 6.24569 6.31789 6.56544 6.60370 6.64786 6.79674 6.96513 7.39488 7.62025 7.65559 7.85607 8.10754 8.31012 8.46663 8.58931 8.67347 9.70330 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.023962 B = 0.005539 C = 0.004680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.248743 B = 5054.008251 C = 5981.505750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.301 6.301 3 C 0.214 3.786 4 C -0.333 4.333 5 C 0.156 3.844 6 C -0.432 4.432 7 H 0.087 0.913 8 C 0.075 3.925 9 N -0.761 5.761 10 Si 0.915 3.085 11 H -0.256 1.256 12 H -0.267 1.267 13 H -0.270 1.270 14 C -0.191 4.191 15 C -0.041 4.041 16 C -0.327 4.327 17 C 0.393 3.607 18 O -0.464 6.464 19 C -0.043 4.043 20 H 0.116 0.884 21 C -0.148 4.148 22 Cl -0.176 7.176 23 H 0.086 0.914 24 H 0.049 0.951 25 H 0.048 0.952 26 H 0.106 0.894 27 H 0.289 0.711 28 H 0.122 0.878 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.271 -1.189 0.408 2.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.212 6.212 3 C 0.168 3.832 4 C -0.353 4.353 5 C 0.152 3.848 6 C -0.459 4.459 7 H 0.105 0.895 8 C -0.148 4.148 9 N -0.383 5.383 10 Si 0.738 3.262 11 H -0.179 1.179 12 H -0.191 1.191 13 H -0.195 1.195 14 C -0.210 4.210 15 C -0.060 4.060 16 C -0.330 4.330 17 C 0.275 3.725 18 O -0.343 6.343 19 C -0.088 4.088 20 H 0.134 0.866 21 C -0.205 4.205 22 Cl -0.150 7.150 23 H 0.104 0.896 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.124 0.876 27 H 0.101 0.899 28 H 0.140 0.860 29 H 0.119 0.881 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.289 -1.920 0.304 3.003 hybrid contribution -0.390 1.095 0.101 1.167 sum 1.898 -0.824 0.405 2.109 Atomic orbital electron populations 1.22893 0.80472 1.02249 1.00945 1.86184 1.19512 1.27811 1.87742 1.18909 0.90846 0.83381 0.90077 1.20954 0.98052 0.91795 1.24536 1.17545 0.92145 0.91494 0.83615 1.19948 1.01051 0.92468 1.32459 0.89471 1.26164 0.94200 1.02118 0.92366 1.69725 1.17739 1.31553 1.19304 0.86128 0.80428 0.79933 0.79694 1.17939 1.19143 1.19486 1.20965 0.93968 0.97334 1.08689 1.20428 0.97449 0.91440 0.96703 1.18650 0.89855 0.93197 1.31294 1.21667 0.87872 0.89345 0.73589 1.90515 1.73682 1.30714 1.39385 1.24703 0.97037 0.88635 0.98406 0.86568 1.21974 1.01674 1.03933 0.92917 1.98693 1.86645 1.43465 1.86159 0.89567 0.93263 0.93330 0.87572 0.89921 0.85977 0.88053 0.89825 0.91152 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.81 101.05 0.99 1.50 16 2 O -0.30 -6.70 8.54 -40.70 -0.35 -7.05 16 3 C 0.21 5.02 6.70 -38.70 -0.26 4.76 16 4 C -0.33 -7.79 8.76 -38.75 -0.34 -8.13 16 5 C 0.16 3.79 5.57 -106.83 -0.60 3.20 16 6 C -0.43 -10.21 9.04 -37.74 -0.34 -10.55 16 7 H 0.09 1.97 7.91 -52.49 -0.42 1.55 16 8 C 0.07 1.64 5.13 -17.31 -0.09 1.55 16 9 N -0.76 -17.17 10.96 55.56 0.61 -16.57 16 10 Si 0.92 16.27 29.60 -169.99 -5.03 11.24 16 11 H -0.26 -4.55 7.11 56.52 0.40 -4.15 16 12 H -0.27 -4.67 7.11 56.52 0.40 -4.26 16 13 H -0.27 -4.74 7.11 56.52 0.40 -4.34 16 14 C -0.19 -4.44 8.61 -39.31 -0.34 -4.78 16 15 C -0.04 -0.88 9.25 -39.56 -0.37 -1.24 16 16 C -0.33 -7.35 5.90 -104.75 -0.62 -7.96 16 17 C 0.39 8.29 6.26 -30.95 -0.19 8.10 16 18 O -0.46 -11.04 15.05 -16.54 -0.25 -11.29 16 19 C -0.04 -0.72 3.02 -27.88 -0.08 -0.81 16 20 H 0.12 1.75 6.71 -51.93 -0.35 1.40 16 21 C -0.15 -2.11 9.30 37.16 0.35 -1.76 16 22 Cl -0.18 -2.98 28.00 -51.86 -1.45 -4.43 16 23 H 0.09 1.22 8.14 -51.92 -0.42 0.79 16 24 H 0.05 0.80 7.65 -51.93 -0.40 0.40 16 25 H 0.05 0.78 7.67 -51.93 -0.40 0.38 16 26 H 0.11 2.31 6.29 -52.49 -0.33 1.98 16 27 H 0.29 5.81 8.29 -40.82 -0.34 5.47 16 28 H 0.12 2.86 6.15 -52.49 -0.32 2.54 16 29 H 0.10 1.80 6.43 -52.48 -0.34 1.46 16 30 H 0.08 1.19 8.11 -51.93 -0.42 0.77 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 290.45 15.07 4.38 4.38 Total: -1.00 -27.51 290.45 -7.35 -34.86 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -3.37 Total: 4.98 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: -1.89 Total: -16.12 kcal Atomic # 7 Polarization: -17.17 SS G_CDS: 0.61 Total: -16.57 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.60 Total: -18.34 kcal Atomic # 14 Polarization: 16.27 SS G_CDS: -5.03 Total: 11.24 kcal Atomic # 17 Polarization: -2.98 SS G_CDS: -1.45 Total: -4.43 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.51 -7.35 -34.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396064156.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.772 kcal (2) G-P(sol) polarization free energy of solvation -27.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds