Wall clock time and date at job start Mon Mar 30 2020 06:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35652 * 116.99878 * 2 1 4 4 C 1.37983 * 120.10044 * 359.73086 * 3 2 1 5 5 C 1.40686 * 119.73198 * 179.77451 * 4 3 2 6 6 C 1.41073 * 120.02963 * 180.23273 * 5 4 3 7 7 H 1.07998 * 120.00184 * 25.01330 * 6 5 4 8 8 C 1.40288 * 119.99750 * 205.02359 * 6 5 4 9 9 N 1.30599 * 120.00366 * 17.90747 * 8 6 5 10 10 Si 1.86801 * 119.99801 * 197.90900 * 8 6 5 11 11 H 1.48506 * 109.47089 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47183 * 119.99778 * 10 8 6 13 13 H 1.48504 * 109.47090 * 239.99976 * 10 8 6 14 14 C 1.41065 * 119.94070 * 0.47090 * 5 4 3 15 15 C 1.36015 * 120.20272 * 359.77960 * 14 5 4 16 16 C 1.40415 * 120.26533 * 359.97438 * 15 14 5 17 17 C 1.46555 * 119.97126 * 179.97438 * 16 15 14 18 18 O 1.21346 * 120.00173 * 180.02562 * 17 16 15 19 19 C 1.50705 * 120.00105 * 0.02562 * 17 16 15 20 20 H 1.09001 * 109.46613 * 34.99906 * 19 17 16 21 21 C 1.53002 * 109.46954 * 275.00103 * 19 17 16 22 22 Cl 1.80296 * 109.47122 * 155.00219 * 19 17 16 23 23 H 1.09007 * 109.47100 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47320 * 59.99674 * 1 2 3 25 25 H 1.09003 * 109.46810 * 299.99621 * 1 2 3 26 26 H 1.07995 * 120.13103 * 359.96811 * 4 3 2 27 27 H 0.97003 * 120.00529 * 180.02562 * 9 8 6 28 28 H 1.08000 * 119.89773 * 179.75309 * 14 5 4 29 29 H 1.08010 * 119.86718 * 179.97438 * 15 14 5 30 30 H 1.09004 * 109.46821 * 60.00129 * 21 19 17 31 31 H 1.08998 * 109.46712 * 179.97438 * 21 19 17 32 32 H 1.08993 * 109.47423 * 300.00210 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2953 2.3672 -0.0056 5 6 1.9420 3.6166 -0.0008 6 6 1.1819 4.8050 -0.0015 7 1 0.1754 4.8025 0.3901 8 6 1.7334 5.9900 -0.5110 9 7 2.7812 5.9410 -1.2890 10 14 0.9689 7.6382 -0.0767 11 1 -0.2003 7.4224 0.8130 12 1 1.9731 8.4813 0.6204 13 1 0.5259 8.3210 -1.3188 14 6 3.3513 3.6800 -0.0002 15 6 4.0876 2.5364 0.0001 16 6 3.4511 1.2848 0.0005 17 6 4.2508 0.0567 0.0003 18 8 3.7013 -1.0252 0.0001 19 6 5.7557 0.1374 0.0002 20 1 6.0734 0.9974 0.5898 21 6 6.2581 0.2905 -1.4368 22 17 6.4384 -1.3689 0.7183 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 0.5138 0.8901 26 1 0.2167 2.3150 -0.0105 27 1 3.1628 6.7604 -1.6411 28 1 3.8470 4.6395 -0.0006 29 1 5.1663 2.5912 0.0001 30 1 5.8454 1.2012 -1.8709 31 1 7.3465 0.3493 -1.4368 32 1 5.9404 -0.5694 -2.0264 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396064156.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:27 Heat of formation + Delta-G solvation = -91.770871 kcal Electronic energy + Delta-G solvation = -18035.526052 eV Core-core repulsion = 14986.167202 eV Total energy + Delta-G solvation = -3049.358850 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.01947 -39.45570 -38.17105 -36.89540 -35.56958 -33.67475 -31.86985 -30.55673 -28.40384 -27.77246 -25.39937 -23.39201 -22.45731 -20.46823 -19.83174 -18.03174 -17.32577 -17.18824 -16.67225 -16.51426 -15.88805 -15.69226 -15.33454 -15.07442 -14.37682 -14.22302 -13.77446 -13.69104 -13.28259 -13.18054 -12.92099 -12.81445 -12.64098 -12.56518 -12.24847 -12.00326 -11.74218 -11.69446 -11.57827 -11.38244 -11.06137 -10.19773 -9.60740 -8.93224 -8.83654 -6.58746 0.22964 1.09681 1.15645 1.36649 1.41400 1.55367 1.86948 2.14604 2.61946 2.65960 3.17143 3.59103 3.94251 3.99588 4.28768 4.38131 4.39277 4.55889 4.65451 4.72093 4.79485 4.85181 4.90071 4.98366 5.06769 5.13698 5.24146 5.67350 5.86517 5.90374 6.12218 6.39494 6.58033 6.71251 6.92105 6.96619 8.08539 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.023962 B = 0.005539 C = 0.004680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.248743 B = 5054.008251 C = 5981.505750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.321 6.321 3 C 0.199 3.801 4 C -0.348 4.348 5 C 0.129 3.871 6 C -0.460 4.460 7 H 0.087 0.913 8 C 0.041 3.959 9 N -0.785 5.785 10 Si 0.987 3.013 11 H -0.258 1.258 12 H -0.258 1.258 13 H -0.263 1.263 14 C -0.212 4.212 15 C -0.028 4.028 16 C -0.347 4.347 17 C 0.393 3.607 18 O -0.497 6.497 19 C -0.038 4.038 20 H 0.139 0.861 21 C -0.144 4.144 22 Cl -0.176 7.176 23 H 0.116 0.884 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.112 0.888 27 H 0.301 0.699 28 H 0.118 0.882 29 H 0.138 0.862 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.080 -0.346 0.392 3.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.234 6.234 3 C 0.153 3.847 4 C -0.368 4.368 5 C 0.126 3.874 6 C -0.487 4.487 7 H 0.105 0.895 8 C -0.180 4.180 9 N -0.408 5.408 10 Si 0.807 3.193 11 H -0.181 1.181 12 H -0.183 1.183 13 H -0.187 1.187 14 C -0.231 4.231 15 C -0.046 4.046 16 C -0.350 4.350 17 C 0.277 3.723 18 O -0.378 6.378 19 C -0.082 4.082 20 H 0.156 0.844 21 C -0.201 4.201 22 Cl -0.149 7.149 23 H 0.134 0.866 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.130 0.870 27 H 0.112 0.888 28 H 0.136 0.864 29 H 0.155 0.845 30 H 0.103 0.897 31 H 0.120 0.880 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.104 -1.089 0.282 3.302 hybrid contribution -0.671 0.752 0.086 1.011 sum 2.433 -0.338 0.368 2.484 Atomic orbital electron populations 1.23182 0.78090 1.04436 1.01445 1.86149 1.22107 1.27513 1.87620 1.19224 0.91736 0.83721 0.90068 1.21076 0.98503 0.91868 1.25368 1.17913 0.93116 0.92145 0.84259 1.20202 1.01412 0.93484 1.33569 0.89540 1.26943 0.94506 1.04953 0.91612 1.69730 1.18487 1.33180 1.19387 0.85063 0.79480 0.75304 0.79469 1.18093 1.18256 1.18743 1.21005 0.93828 0.97851 1.10461 1.20712 0.99134 0.90247 0.94547 1.19083 0.90106 0.94478 1.31305 1.22050 0.89975 0.88181 0.72113 1.90494 1.74965 1.31561 1.40746 1.24669 0.93765 0.89282 1.00523 0.84362 1.22001 1.03640 1.03608 0.90814 1.98697 1.86293 1.43710 1.86248 0.86557 0.92880 0.92674 0.87018 0.88770 0.86434 0.84471 0.89682 0.87987 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.78 9.81 113.37 1.11 1.90 16 2 O -0.32 -14.47 8.54 -68.60 -0.59 -15.06 16 3 C 0.20 9.47 6.70 22.84 0.15 9.62 16 4 C -0.35 -16.66 8.76 22.81 0.20 -16.46 16 5 C 0.13 6.42 5.57 -21.29 -0.12 6.30 16 6 C -0.46 -22.04 9.04 23.46 0.21 -21.83 16 7 H 0.09 3.99 7.91 -2.91 -0.02 3.96 16 8 C 0.04 1.78 5.13 85.37 0.44 2.22 16 9 N -0.79 -35.16 10.96 21.88 0.24 -34.92 16 10 Si 0.99 32.56 29.60 68.60 2.03 34.59 16 11 H -0.26 -8.46 7.11 99.48 0.71 -7.76 16 12 H -0.26 -8.13 7.11 99.48 0.71 -7.42 16 13 H -0.26 -8.33 7.11 99.48 0.71 -7.62 16 14 C -0.21 -9.94 8.61 22.45 0.19 -9.75 16 15 C -0.03 -1.16 9.25 22.28 0.21 -0.95 16 16 C -0.35 -15.51 5.90 -19.94 -0.12 -15.63 16 17 C 0.39 16.25 6.26 27.86 0.17 16.43 16 18 O -0.50 -23.57 15.05 17.84 0.27 -23.30 16 19 C -0.04 -1.19 3.02 29.85 0.09 -1.10 16 20 H 0.14 3.72 6.71 -2.39 -0.02 3.70 16 21 C -0.14 -3.72 9.30 71.98 0.67 -3.05 16 22 Cl -0.18 -5.63 28.00 -2.72 -0.08 -5.70 16 23 H 0.12 3.14 8.14 -2.38 -0.02 3.12 16 24 H 0.05 1.72 7.65 -2.39 -0.02 1.71 16 25 H 0.05 1.76 7.67 -2.39 -0.02 1.74 16 26 H 0.11 5.00 6.29 -2.91 -0.02 4.98 16 27 H 0.30 11.81 8.29 -92.71 -0.77 11.04 16 28 H 0.12 5.52 6.15 -2.91 -0.02 5.51 16 29 H 0.14 4.53 6.43 -2.91 -0.02 4.51 16 30 H 0.08 2.21 8.11 -2.38 -0.02 2.19 16 31 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -59.60 290.45 6.23 -53.37 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 1.14 Total: 23.32 kcal Atomic # 6 Polarization: -35.51 SS G_CDS: 3.21 Total: -32.30 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: 0.24 Total: -34.92 kcal Atomic # 8 Polarization: -38.04 SS G_CDS: -0.32 Total: -38.36 kcal Atomic # 14 Polarization: 32.56 SS G_CDS: 2.03 Total: 34.59 kcal Atomic # 17 Polarization: -5.63 SS G_CDS: -0.08 Total: -5.70 kcal Total: -59.60 6.23 -53.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396064156.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.401 kcal (2) G-P(sol) polarization free energy of solvation -59.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds