Wall clock time and date at job start Mon Mar 30 2020 06:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35655 * 116.99708 * 2 1 4 4 C 1.37979 * 120.10295 * 359.96661 * 3 2 1 5 5 C 1.40688 * 119.74143 * 180.02562 * 4 3 2 6 6 C 1.41060 * 120.03429 * 179.97438 * 5 4 3 7 7 H 1.07998 * 120.00504 * 334.36084 * 6 5 4 8 8 C 1.40293 * 120.00010 * 154.35420 * 6 5 4 9 9 N 1.30610 * 120.00045 * 343.24999 * 8 6 5 10 10 Si 1.86803 * 119.99933 * 163.24697 * 8 6 5 11 11 H 1.48498 * 109.47179 * 60.00333 * 10 8 6 12 12 H 1.48499 * 109.46769 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.46931 * 300.00063 * 10 8 6 14 14 C 1.41075 * 119.93363 * 0.02562 * 5 4 3 15 15 C 1.36019 * 120.20243 * 359.72649 * 14 5 4 16 16 C 1.40417 * 120.26587 * 0.52591 * 15 14 5 17 17 C 1.46552 * 119.97283 * 179.75672 * 16 15 14 18 18 O 1.21343 * 120.00237 * 179.72371 * 17 16 15 19 19 C 1.50706 * 119.99678 * 359.72020 * 17 16 15 20 20 C 1.52999 * 109.46894 * 179.97438 * 19 17 16 21 21 Cl 1.80298 * 109.47204 * 180.02562 * 20 19 17 22 22 H 1.09000 * 109.46455 * 180.02562 * 1 2 3 23 23 H 1.08992 * 109.47129 * 300.00344 * 1 2 3 24 24 H 1.08995 * 109.46740 * 60.00996 * 1 2 3 25 25 H 1.08004 * 120.13167 * 0.02562 * 4 3 2 26 26 H 0.96995 * 120.00230 * 179.97438 * 9 8 6 27 27 H 1.08005 * 119.89627 * 179.97438 * 14 5 4 28 28 H 1.07995 * 119.86295 * 180.28506 * 15 14 5 29 29 H 1.09009 * 109.46908 * 60.00481 * 19 17 16 30 30 H 1.08993 * 109.47184 * 300.00175 * 19 17 16 31 31 H 1.08999 * 109.47292 * 300.00525 * 20 19 17 32 32 H 1.08999 * 109.46831 * 60.00601 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2954 2.3672 -0.0007 5 6 1.9419 3.6167 -0.0012 6 6 1.1818 4.8050 -0.0025 7 1 0.1807 4.8053 -0.4077 8 6 1.7261 5.9865 0.5228 9 7 2.7771 5.9338 1.2965 10 14 0.9478 7.6352 0.1157 11 1 -0.4600 7.6480 0.5878 12 1 1.7061 8.7201 0.7888 13 1 0.9792 7.8479 -1.3536 14 6 3.3512 3.6801 -0.0016 15 6 4.0876 2.5365 0.0042 16 6 3.4511 1.2849 -0.0006 17 6 4.2508 0.0568 0.0003 18 8 3.7014 -1.0251 0.0012 19 6 5.7557 0.1377 -0.0001 20 6 6.3423 -1.2754 0.0016 21 17 8.1427 -1.1788 0.0019 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3632 0.5137 -0.8901 25 1 0.2166 2.3151 -0.0008 26 1 3.1537 6.7506 1.6593 27 1 3.8470 4.6397 -0.0024 28 1 5.1662 2.5914 0.0085 29 1 6.0912 0.6710 0.8895 30 1 6.0908 0.6695 -0.8905 31 1 6.0072 -1.8069 0.8923 32 1 6.0070 -1.8090 -0.8877 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396064173.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:56 Heat of formation + Delta-G solvation = -84.791321 kcal Electronic energy + Delta-G solvation = -17733.059115 eV Core-core repulsion = 14684.002922 eV Total energy + Delta-G solvation = -3049.056194 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -39.32499 -37.85444 -36.44215 -35.85283 -33.80832 -32.00640 -30.37269 -28.82815 -26.80480 -26.31887 -23.75974 -21.65547 -20.65416 -18.83256 -18.09073 -16.20992 -15.68318 -15.52572 -15.34113 -14.93016 -14.83479 -14.15728 -13.49873 -13.37387 -13.08533 -12.77344 -12.59642 -12.17778 -11.98642 -11.64482 -11.44088 -11.36634 -11.19928 -10.91453 -10.79740 -10.46039 -10.32782 -10.22660 -10.04288 -9.81949 -9.38546 -8.59949 -7.80695 -7.19853 -7.08870 -4.78167 1.98143 2.38197 2.81817 2.87362 2.89970 2.95342 3.50642 3.64632 4.17828 4.38256 4.84461 5.09999 5.11372 5.40756 5.60669 5.67545 5.74615 5.92191 5.96628 6.02936 6.12313 6.40148 6.61206 6.63591 6.68929 6.84132 7.00576 7.43238 7.65341 7.70419 7.89462 8.13538 8.34124 8.49710 8.62330 8.70500 9.74905 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.021150 B = 0.004934 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.568119 B = 5674.081751 C = 6904.767090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.301 6.301 3 C 0.211 3.789 4 C -0.334 4.334 5 C 0.157 3.843 6 C -0.436 4.436 7 H 0.086 0.914 8 C 0.075 3.925 9 N -0.763 5.763 10 Si 0.916 3.084 11 H -0.261 1.261 12 H -0.274 1.274 13 H -0.259 1.259 14 C -0.193 4.193 15 C -0.037 4.037 16 C -0.331 4.331 17 C 0.401 3.599 18 O -0.493 6.493 19 C -0.173 4.173 20 C -0.012 4.012 21 Cl -0.202 7.202 22 H 0.085 0.915 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.105 0.895 26 H 0.290 0.710 27 H 0.122 0.878 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.176 -3.336 -1.471 4.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.213 6.213 3 C 0.165 3.835 4 C -0.355 4.355 5 C 0.153 3.847 6 C -0.463 4.463 7 H 0.104 0.896 8 C -0.148 4.148 9 N -0.386 5.386 10 Si 0.739 3.261 11 H -0.186 1.186 12 H -0.199 1.199 13 H -0.183 1.183 14 C -0.212 4.212 15 C -0.056 4.056 16 C -0.334 4.334 17 C 0.286 3.714 18 O -0.374 6.374 19 C -0.211 4.211 20 C -0.075 4.075 21 Cl -0.176 7.176 22 H 0.104 0.896 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.123 0.877 26 H 0.101 0.899 27 H 0.140 0.860 28 H 0.121 0.879 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.114 0.886 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.288 -3.930 -1.309 4.732 hybrid contribution -0.440 1.184 -0.009 1.263 sum 1.848 -2.746 -1.318 3.563 Atomic orbital electron populations 1.22882 0.80580 1.02167 1.00941 1.86176 1.19416 1.27882 1.87824 1.18957 0.91007 0.83293 0.90221 1.20962 0.98002 0.91895 1.24597 1.17540 0.92165 0.91445 0.83508 1.19874 1.01413 0.92698 1.32278 0.89618 1.26153 0.94253 1.01984 0.92428 1.69713 1.17810 1.31750 1.19282 0.86211 0.80204 0.79329 0.80310 1.18570 1.19852 1.18321 1.20980 0.93943 0.97398 1.08851 1.20450 0.97677 0.91371 0.96110 1.18790 0.89873 0.93774 1.30942 1.21630 0.88682 0.88788 0.72309 1.90476 1.74701 1.30919 1.41341 1.22305 0.96939 0.96468 1.05413 1.24180 0.77875 0.99495 1.05918 1.98694 1.20449 1.99031 1.99447 0.89628 0.93294 0.93371 0.87673 0.89857 0.86047 0.87867 0.88175 0.88211 0.88575 0.88578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.81 101.05 0.99 1.50 16 2 O -0.30 -6.64 8.54 -40.71 -0.35 -6.98 16 3 C 0.21 4.95 6.70 -38.69 -0.26 4.69 16 4 C -0.33 -7.88 8.76 -38.75 -0.34 -8.22 16 5 C 0.16 3.88 5.57 -106.83 -0.59 3.29 16 6 C -0.44 -10.43 9.04 -37.74 -0.34 -10.78 16 7 H 0.09 1.95 7.90 -52.49 -0.41 1.53 16 8 C 0.07 1.67 5.15 -17.30 -0.09 1.58 16 9 N -0.76 -17.58 10.95 55.57 0.61 -16.97 16 10 Si 0.92 16.53 29.59 -169.99 -5.03 11.50 16 11 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 12 H -0.27 -4.80 7.11 56.52 0.40 -4.40 16 13 H -0.26 -4.66 7.11 56.52 0.40 -4.26 16 14 C -0.19 -4.57 8.61 -39.30 -0.34 -4.91 16 15 C -0.04 -0.80 9.38 -39.56 -0.37 -1.17 16 16 C -0.33 -7.42 5.90 -104.74 -0.62 -8.04 16 17 C 0.40 8.08 7.10 -30.96 -0.22 7.86 16 18 O -0.49 -10.99 14.76 -16.54 -0.24 -11.23 16 19 C -0.17 -2.67 4.41 -27.88 -0.12 -2.79 16 20 C -0.01 -0.17 5.94 37.16 0.22 0.05 16 21 Cl -0.20 -2.69 29.15 -51.86 -1.51 -4.21 16 22 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 23 H 0.05 0.79 7.66 -51.93 -0.40 0.40 16 24 H 0.05 0.77 7.66 -51.93 -0.40 0.37 16 25 H 0.11 2.30 6.29 -52.48 -0.33 1.97 16 26 H 0.29 6.00 8.29 -40.82 -0.34 5.66 16 27 H 0.12 2.91 6.18 -52.48 -0.32 2.58 16 28 H 0.10 1.89 7.00 -52.49 -0.37 1.52 16 29 H 0.10 1.46 8.07 -51.92 -0.42 1.04 16 30 H 0.10 1.42 8.08 -51.93 -0.42 1.01 16 31 H 0.10 1.33 8.10 -51.93 -0.42 0.91 16 32 H 0.10 1.32 8.10 -51.93 -0.42 0.90 16 LS Contribution 292.12 15.07 4.40 4.40 Total: -1.00 -27.05 292.12 -7.67 -34.73 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -3.47 Total: 5.71 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: -2.08 Total: -16.95 kcal Atomic # 7 Polarization: -17.58 SS G_CDS: 0.61 Total: -16.97 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.59 Total: -18.21 kcal Atomic # 14 Polarization: 16.53 SS G_CDS: -5.03 Total: 11.50 kcal Atomic # 17 Polarization: -2.69 SS G_CDS: -1.51 Total: -4.21 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -27.05 -7.67 -34.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396064173.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.065 kcal (2) G-P(sol) polarization free energy of solvation -27.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds