Wall clock time and date at job start Mon Mar 30 2020 06:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35655 * 116.99708 * 2 1 4 4 C 1.37979 * 120.10295 * 359.96661 * 3 2 1 5 5 C 1.40688 * 119.74143 * 180.02562 * 4 3 2 6 6 C 1.41060 * 120.03429 * 179.97438 * 5 4 3 7 7 H 1.07998 * 120.00504 * 334.36084 * 6 5 4 8 8 C 1.40293 * 120.00010 * 154.35420 * 6 5 4 9 9 N 1.30610 * 120.00045 * 343.24999 * 8 6 5 10 10 Si 1.86803 * 119.99933 * 163.24697 * 8 6 5 11 11 H 1.48498 * 109.47179 * 60.00333 * 10 8 6 12 12 H 1.48499 * 109.46769 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.46931 * 300.00063 * 10 8 6 14 14 C 1.41075 * 119.93363 * 0.02562 * 5 4 3 15 15 C 1.36019 * 120.20243 * 359.72649 * 14 5 4 16 16 C 1.40417 * 120.26587 * 0.52591 * 15 14 5 17 17 C 1.46552 * 119.97283 * 179.75672 * 16 15 14 18 18 O 1.21343 * 120.00237 * 179.72371 * 17 16 15 19 19 C 1.50706 * 119.99678 * 359.72020 * 17 16 15 20 20 C 1.52999 * 109.46894 * 179.97438 * 19 17 16 21 21 Cl 1.80298 * 109.47204 * 180.02562 * 20 19 17 22 22 H 1.09000 * 109.46455 * 180.02562 * 1 2 3 23 23 H 1.08992 * 109.47129 * 300.00344 * 1 2 3 24 24 H 1.08995 * 109.46740 * 60.00996 * 1 2 3 25 25 H 1.08004 * 120.13167 * 0.02562 * 4 3 2 26 26 H 0.96995 * 120.00230 * 179.97438 * 9 8 6 27 27 H 1.08005 * 119.89627 * 179.97438 * 14 5 4 28 28 H 1.07995 * 119.86295 * 180.28506 * 15 14 5 29 29 H 1.09009 * 109.46908 * 60.00481 * 19 17 16 30 30 H 1.08993 * 109.47184 * 300.00175 * 19 17 16 31 31 H 1.08999 * 109.47292 * 300.00525 * 20 19 17 32 32 H 1.08999 * 109.46831 * 60.00601 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2954 2.3672 -0.0007 5 6 1.9419 3.6167 -0.0012 6 6 1.1818 4.8050 -0.0025 7 1 0.1807 4.8053 -0.4077 8 6 1.7261 5.9865 0.5228 9 7 2.7771 5.9338 1.2965 10 14 0.9478 7.6352 0.1157 11 1 -0.4600 7.6480 0.5878 12 1 1.7061 8.7201 0.7888 13 1 0.9792 7.8479 -1.3536 14 6 3.3512 3.6801 -0.0016 15 6 4.0876 2.5365 0.0042 16 6 3.4511 1.2849 -0.0006 17 6 4.2508 0.0568 0.0003 18 8 3.7014 -1.0251 0.0012 19 6 5.7557 0.1377 -0.0001 20 6 6.3423 -1.2754 0.0016 21 17 8.1427 -1.1788 0.0019 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3632 0.5137 -0.8901 25 1 0.2166 2.3151 -0.0008 26 1 3.1537 6.7506 1.6593 27 1 3.8470 4.6397 -0.0024 28 1 5.1662 2.5914 0.0085 29 1 6.0912 0.6710 0.8895 30 1 6.0908 0.6695 -0.8905 31 1 6.0072 -1.8069 0.8923 32 1 6.0070 -1.8090 -0.8877 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396064173.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:44 Heat of formation + Delta-G solvation = -97.322229 kcal Electronic energy + Delta-G solvation = -17733.602496 eV Core-core repulsion = 14684.002922 eV Total energy + Delta-G solvation = -3049.599575 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -40.98461 -39.46003 -38.14675 -36.96496 -35.51383 -33.37207 -32.02462 -30.53479 -28.40829 -27.85924 -25.18672 -23.27587 -22.36083 -20.38677 -19.79894 -17.87318 -17.29478 -17.13348 -16.69334 -16.52006 -16.30039 -15.70635 -15.07445 -14.82135 -14.52579 -14.29407 -14.05003 -13.74397 -13.37344 -13.25052 -12.93090 -12.81073 -12.60358 -12.52693 -12.26495 -11.96223 -11.67840 -11.60769 -11.47969 -11.29975 -11.05887 -10.20283 -9.57977 -8.91422 -8.81065 -6.58026 0.29561 1.16128 1.26696 1.36324 1.41269 1.51661 1.88747 2.14456 2.63024 2.69185 3.49662 3.61794 3.79778 3.98862 4.29575 4.39529 4.39791 4.46761 4.66104 4.76959 4.78320 4.87238 4.91565 4.93174 5.01945 5.10277 5.26781 5.69989 5.88663 5.93162 6.14228 6.40702 6.59750 6.72410 6.95347 7.03251 8.10658 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.021150 B = 0.004934 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.568119 B = 5674.081751 C = 6904.767090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.319 6.319 3 C 0.197 3.803 4 C -0.350 4.350 5 C 0.130 3.870 6 C -0.467 4.467 7 H 0.086 0.914 8 C 0.040 3.960 9 N -0.790 5.790 10 Si 0.988 3.012 11 H -0.258 1.258 12 H -0.263 1.263 13 H -0.257 1.257 14 C -0.217 4.217 15 C -0.026 4.026 16 C -0.351 4.351 17 C 0.403 3.597 18 O -0.515 6.515 19 C -0.163 4.163 20 C -0.007 4.007 21 Cl -0.193 7.193 22 H 0.118 0.882 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.111 0.889 26 H 0.300 0.700 27 H 0.115 0.885 28 H 0.137 0.863 29 H 0.114 0.886 30 H 0.117 0.883 31 H 0.096 0.904 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.866 -3.072 -1.608 4.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.232 6.232 3 C 0.150 3.850 4 C -0.370 4.370 5 C 0.126 3.874 6 C -0.493 4.493 7 H 0.104 0.896 8 C -0.180 4.180 9 N -0.413 5.413 10 Si 0.808 3.192 11 H -0.182 1.182 12 H -0.187 1.187 13 H -0.181 1.181 14 C -0.236 4.236 15 C -0.045 4.045 16 C -0.354 4.354 17 C 0.289 3.711 18 O -0.399 6.399 19 C -0.200 4.200 20 C -0.069 4.069 21 Cl -0.166 7.166 22 H 0.136 0.864 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.129 0.871 26 H 0.111 0.889 27 H 0.132 0.868 28 H 0.155 0.845 29 H 0.132 0.868 30 H 0.135 0.865 31 H 0.115 0.885 32 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.982 -3.683 -1.441 4.953 hybrid contribution -0.652 0.985 0.051 1.182 sum 2.330 -2.698 -1.390 3.827 Atomic orbital electron populations 1.23176 0.78189 1.04456 1.01350 1.86139 1.21991 1.27379 1.87671 1.19258 0.91894 0.83658 0.90167 1.21095 0.98480 0.92002 1.25404 1.17907 0.93066 0.92189 0.84189 1.20144 1.01869 0.93741 1.33593 0.89552 1.26954 0.94562 1.04926 0.91592 1.69735 1.18753 1.33236 1.19593 0.85144 0.79300 0.74812 0.79984 1.18242 1.18656 1.18143 1.21015 0.93899 0.97872 1.10814 1.20740 0.99253 0.90379 0.94086 1.19309 0.90214 0.95257 1.30636 1.21978 0.90779 0.87401 0.70952 1.90459 1.75827 1.31449 1.42116 1.22212 0.93093 0.97941 1.06799 1.24048 0.78349 0.98391 1.06139 1.98700 1.19491 1.98991 1.99446 0.86404 0.93075 0.92752 0.87107 0.88894 0.86753 0.84530 0.86812 0.86526 0.88545 0.88377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.77 9.81 113.37 1.11 1.88 16 2 O -0.32 -14.10 8.54 -68.63 -0.59 -14.69 16 3 C 0.20 9.32 6.70 22.84 0.15 9.48 16 4 C -0.35 -16.91 8.76 22.81 0.20 -16.71 16 5 C 0.13 6.59 5.57 -21.29 -0.12 6.47 16 6 C -0.47 -22.85 9.04 23.46 0.21 -22.63 16 7 H 0.09 4.03 7.90 -2.91 -0.02 4.01 16 8 C 0.04 1.79 5.15 85.37 0.44 2.23 16 9 N -0.79 -36.56 10.95 21.88 0.24 -36.32 16 10 Si 0.99 33.38 29.59 68.60 2.03 35.41 16 11 H -0.26 -8.53 7.11 99.48 0.71 -7.82 16 12 H -0.26 -8.31 7.11 99.48 0.71 -7.60 16 13 H -0.26 -8.56 7.11 99.48 0.71 -7.85 16 14 C -0.22 -10.44 8.61 22.45 0.19 -10.25 16 15 C -0.03 -1.11 9.38 22.28 0.21 -0.90 16 16 C -0.35 -15.66 5.90 -19.94 -0.12 -15.77 16 17 C 0.40 15.76 7.10 27.86 0.20 15.96 16 18 O -0.52 -22.59 14.76 17.85 0.26 -22.33 16 19 C -0.16 -4.62 4.41 29.85 0.13 -4.49 16 20 C -0.01 -0.17 5.94 71.98 0.43 0.26 16 21 Cl -0.19 -4.65 29.15 -2.72 -0.08 -4.73 16 22 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 23 H 0.05 1.65 7.66 -2.39 -0.02 1.64 16 24 H 0.05 1.72 7.66 -2.39 -0.02 1.70 16 25 H 0.11 5.01 6.29 -2.91 -0.02 4.99 16 26 H 0.30 12.29 8.29 -92.71 -0.77 11.52 16 27 H 0.11 5.57 6.18 -2.91 -0.02 5.55 16 28 H 0.14 4.72 7.00 -2.91 -0.02 4.70 16 29 H 0.11 2.98 8.07 -2.38 -0.02 2.96 16 30 H 0.12 2.97 8.08 -2.39 -0.02 2.95 16 31 H 0.10 2.48 8.10 -2.39 -0.02 2.46 16 32 H 0.10 2.49 8.10 -2.39 -0.02 2.47 16 Total: -1.00 -58.45 292.12 6.05 -52.40 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: 1.14 Total: 24.72 kcal Atomic # 6 Polarization: -37.51 SS G_CDS: 3.04 Total: -34.47 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: 0.24 Total: -36.32 kcal Atomic # 8 Polarization: -36.69 SS G_CDS: -0.32 Total: -37.01 kcal Atomic # 14 Polarization: 33.38 SS G_CDS: 2.03 Total: 35.41 kcal Atomic # 17 Polarization: -4.65 SS G_CDS: -0.08 Total: -4.73 kcal Total: -58.45 6.05 -52.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396064173.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.920 kcal (2) G-P(sol) polarization free energy of solvation -58.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds