Wall clock time and date at job start Mon Mar 30 2020 06:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35721 * 116.99806 * 2 1 4 4 C 1.39298 * 119.45369 * 359.97438 * 3 2 1 5 5 C 1.37762 * 121.24743 * 179.72757 * 4 3 2 6 6 C 1.39826 * 120.09148 * 0.25427 * 5 4 3 7 7 C 1.46359 * 120.52885 * 179.97438 * 6 5 4 8 8 O 1.21365 * 119.99990 * 282.05098 * 7 6 5 9 9 C 1.50695 * 119.99818 * 102.05613 * 7 6 5 10 10 H 1.09002 * 109.47024 * 153.24915 * 9 7 6 11 11 C 1.52995 * 109.47357 * 273.24523 * 9 7 6 12 12 Cl 1.80296 * 109.47349 * 33.25052 * 9 7 6 13 13 C 1.46708 * 118.94131 * 0.02562 * 6 5 4 14 14 C 1.40799 * 120.59210 * 180.02562 * 13 6 5 15 15 H 1.08000 * 119.99563 * 329.63407 * 14 13 6 16 16 C 1.40348 * 120.00098 * 149.63616 * 14 13 6 17 17 N 1.30582 * 119.99784 * 166.93631 * 16 14 13 18 18 Si 1.86801 * 119.99849 * 346.92817 * 16 14 13 19 19 H 1.48494 * 109.46861 * 88.85721 * 18 16 14 20 20 H 1.48499 * 109.46919 * 208.85195 * 18 16 14 21 21 H 1.48496 * 109.47161 * 328.85574 * 18 16 14 22 22 C 1.38212 * 119.45533 * 180.24069 * 3 2 1 23 23 H 1.08997 * 109.47158 * 60.00555 * 1 2 3 24 24 H 1.09001 * 109.47168 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47262 * 300.00236 * 1 2 3 26 26 H 1.08002 * 119.37805 * 0.02562 * 4 3 2 27 27 H 1.07998 * 119.95826 * 180.28146 * 5 4 3 28 28 H 1.09002 * 109.46734 * 60.00214 * 11 9 7 29 29 H 1.09001 * 109.47714 * 180.02562 * 11 9 7 30 30 H 1.08997 * 109.47645 * 300.00757 * 11 9 7 31 31 H 0.96999 * 119.99922 * 179.97438 * 17 16 14 32 32 H 1.08010 * 120.09713 * 0.03589 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2753 2.3702 -0.0005 5 6 1.8620 3.6167 0.0050 6 6 3.2551 3.7358 0.0060 7 6 3.8885 5.0553 0.0114 8 8 3.9536 5.7013 -1.0140 9 6 4.4598 5.6116 1.2901 10 1 5.2631 6.3101 1.0555 11 6 3.3604 6.3406 2.0652 12 17 5.1102 4.2631 2.2945 13 6 4.0719 2.5171 0.0005 14 6 5.4776 2.5966 0.0018 15 1 5.9715 3.4352 -0.4665 16 6 6.2371 1.5862 0.6117 17 7 7.5236 1.5180 0.3990 18 14 5.4074 0.3390 1.7278 19 1 4.9366 -0.8135 0.9183 20 1 6.3774 -0.1355 2.7471 21 1 4.2487 0.9745 2.4050 22 6 3.4260 1.2686 -0.0051 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 0.1982 2.2917 -0.0005 27 1 1.2450 4.5031 0.0091 28 1 2.5571 5.6421 2.2998 29 1 3.7737 6.7434 2.9899 30 1 2.9671 7.1558 1.4579 31 1 8.0486 0.8198 0.8208 32 1 4.0072 0.3582 -0.0096 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396064608.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:18 Heat of formation + Delta-G solvation = -83.777621 kcal Electronic energy + Delta-G solvation = -18586.754905 eV Core-core repulsion = 15537.742668 eV Total energy + Delta-G solvation = -3049.012236 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = -0.11 seconds Orbital eigenvalues (eV) -40.92389 -40.14535 -37.76302 -36.82526 -35.48433 -33.39004 -32.42943 -31.12630 -28.47769 -26.92389 -25.86010 -23.48059 -22.86333 -20.42680 -19.63816 -18.41109 -17.63751 -17.04420 -16.95304 -16.57698 -16.43014 -15.69869 -15.44848 -14.99898 -14.83121 -14.04230 -13.98978 -13.68191 -13.52511 -13.47398 -13.11948 -12.76763 -12.71993 -12.53317 -12.36204 -12.03004 -11.79146 -11.49909 -11.48215 -11.18551 -10.93209 -10.42499 -9.57905 -8.98901 -8.84805 -6.54083 0.50674 0.75889 0.86900 1.23458 1.34267 1.44616 1.57570 2.07782 2.53169 2.61853 3.06407 3.41403 3.86178 3.88598 4.09522 4.38908 4.46317 4.47608 4.54157 4.70454 4.71707 4.74833 4.77504 4.82956 5.13862 5.16059 5.24820 5.58591 5.68859 5.74685 5.97269 6.13664 6.40881 6.52647 6.72260 6.79790 8.07932 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.014790 B = 0.011487 C = 0.007735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.655315 B = 2436.989965 C = 3618.930436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.348 6.348 3 C 0.174 3.826 4 C -0.318 4.318 5 C -0.006 4.006 6 C -0.311 4.311 7 C 0.446 3.554 8 O -0.492 6.492 9 C -0.051 4.051 10 H 0.122 0.878 11 C -0.141 4.141 12 Cl -0.150 7.150 13 C 0.147 3.853 14 C -0.424 4.424 15 H 0.061 0.939 16 C 0.074 3.926 17 N -0.822 5.822 18 Si 0.943 3.057 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.246 1.246 22 C -0.309 4.309 23 H 0.062 0.938 24 H 0.118 0.882 25 H 0.063 0.937 26 H 0.142 0.858 27 H 0.133 0.867 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.297 0.703 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.498 2.815 5.544 12.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.262 6.262 3 C 0.129 3.871 4 C -0.337 4.337 5 C -0.024 4.024 6 C -0.313 4.313 7 C 0.325 3.675 8 O -0.369 6.369 9 C -0.096 4.096 10 H 0.140 0.860 11 C -0.198 4.198 12 Cl -0.123 7.123 13 C 0.144 3.856 14 C -0.452 4.452 15 H 0.079 0.921 16 C -0.145 4.145 17 N -0.446 5.446 18 Si 0.769 3.231 19 H -0.194 1.194 20 H -0.207 1.207 21 H -0.169 1.169 22 C -0.329 4.329 23 H 0.081 0.919 24 H 0.136 0.864 25 H 0.082 0.918 26 H 0.159 0.841 27 H 0.151 0.849 28 H 0.093 0.907 29 H 0.117 0.883 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.042 2.789 5.104 11.605 hybrid contribution 0.252 -0.670 0.220 0.748 sum -9.790 2.120 5.324 11.344 Atomic orbital electron populations 1.23281 0.76739 1.05046 1.02209 1.85959 1.23576 1.28094 1.88606 1.18970 0.91481 0.84369 0.92278 1.20606 0.99526 0.91125 1.22493 1.20676 0.91676 0.97260 0.92792 1.20895 0.94516 0.92648 1.23275 1.22326 0.72129 0.85012 0.88041 1.90489 1.49925 1.60986 1.35496 1.24657 1.01184 0.91375 0.92398 0.85982 1.22010 0.96466 1.00251 1.01047 1.98767 1.87923 1.53104 1.72518 1.18192 0.92167 0.89142 0.86144 1.19146 0.89877 1.05842 1.30319 0.92089 1.26503 0.94767 0.97414 0.95863 1.69540 1.08232 1.31299 1.35551 0.85835 0.79153 0.79205 0.78925 1.19398 1.20700 1.16921 1.20336 0.92073 0.97186 1.23259 0.91911 0.86426 0.91811 0.84054 0.84918 0.90730 0.88271 0.89270 0.89193 0.88156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 9.79 113.37 1.11 1.64 16 2 O -0.35 -13.22 10.47 -90.43 -0.95 -14.16 16 3 C 0.17 7.46 6.67 22.52 0.15 7.61 16 4 C -0.32 -11.85 8.97 22.41 0.20 -11.65 16 5 C -0.01 -0.22 9.79 22.54 0.22 0.00 16 6 C -0.31 -13.85 5.09 -18.57 -0.09 -13.94 16 7 C 0.45 18.64 4.83 27.80 0.13 18.78 16 8 O -0.49 -22.62 17.86 -3.29 -0.06 -22.68 16 9 C -0.05 -1.75 3.75 29.84 0.11 -1.64 16 10 H 0.12 3.86 8.14 -2.39 -0.02 3.85 16 11 C -0.14 -3.42 9.30 71.98 0.67 -2.75 16 12 Cl -0.15 -5.93 24.46 -2.72 -0.07 -6.00 16 13 C 0.15 7.36 4.66 -19.87 -0.09 7.27 16 14 C -0.42 -22.61 6.53 23.41 0.15 -22.46 16 15 H 0.06 3.56 7.67 -2.91 -0.02 3.54 16 16 C 0.07 3.82 5.40 85.39 0.46 4.28 16 17 N -0.82 -43.36 13.92 21.89 0.30 -43.05 16 18 Si 0.94 43.51 24.44 68.60 1.68 45.19 16 19 H -0.27 -12.31 6.47 99.48 0.64 -11.66 16 20 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.25 -11.53 6.88 99.48 0.68 -10.85 16 22 C -0.31 -15.12 7.07 22.83 0.16 -14.96 16 23 H 0.06 1.40 7.62 -2.39 -0.02 1.38 16 24 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 25 H 0.06 1.40 7.62 -2.39 -0.02 1.38 16 26 H 0.14 4.16 6.16 -2.91 -0.02 4.14 16 27 H 0.13 4.14 8.06 -2.91 -0.02 4.12 16 28 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.30 14.21 8.29 -92.71 -0.77 13.44 16 32 H 0.10 5.10 4.27 -2.91 -0.01 5.09 16 Total: -1.00 -62.95 283.86 5.15 -57.80 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 1.06 Total: 10.73 kcal Atomic # 6 Polarization: -31.01 SS G_CDS: 3.19 Total: -27.83 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: 0.30 Total: -43.05 kcal Atomic # 8 Polarization: -35.84 SS G_CDS: -1.01 Total: -36.84 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.68 Total: 45.19 kcal Atomic # 17 Polarization: -5.93 SS G_CDS: -0.07 Total: -6.00 kcal Total: -62.95 5.15 -57.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396064608.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.976 kcal (2) G-P(sol) polarization free energy of solvation -62.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.11 seconds