Wall clock time and date at job start Mon Mar 30 2020 06:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35716 * 116.99832 * 2 1 4 4 C 1.39299 * 119.45413 * 359.97438 * 3 2 1 5 5 C 1.37767 * 121.24861 * 180.27780 * 4 3 2 6 6 C 1.39824 * 120.08812 * 359.44225 * 5 4 3 7 7 C 1.46366 * 120.52693 * 180.27261 * 6 5 4 8 8 O 1.21378 * 119.99842 * 185.47279 * 7 6 5 9 9 C 1.50696 * 120.00077 * 5.47310 * 7 6 5 10 10 H 1.08998 * 109.46931 * 34.99710 * 9 7 6 11 11 C 1.52997 * 109.47273 * 274.99892 * 9 7 6 12 12 Cl 1.80305 * 109.46947 * 154.99643 * 9 7 6 13 13 C 1.46704 * 118.94278 * 0.56561 * 6 5 4 14 14 C 1.40803 * 120.59097 * 179.72698 * 13 6 5 15 15 H 1.07998 * 119.99920 * 32.24423 * 14 13 6 16 16 C 1.40346 * 120.00432 * 212.23647 * 14 13 6 17 17 N 1.30591 * 119.99464 * 9.22781 * 16 14 13 18 18 Si 1.86795 * 120.00475 * 189.22487 * 16 14 13 19 19 H 1.48508 * 109.47076 * 90.00197 * 18 16 14 20 20 H 1.48501 * 109.47471 * 210.00411 * 18 16 14 21 21 H 1.48505 * 109.46933 * 330.00709 * 18 16 14 22 22 C 1.38216 * 119.45637 * 180.02562 * 3 2 1 23 23 H 1.09005 * 109.46796 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47591 * 299.99820 * 1 2 3 25 25 H 1.09002 * 109.46792 * 60.00755 * 1 2 3 26 26 H 1.07995 * 119.37840 * 359.97438 * 4 3 2 27 27 H 1.07995 * 119.95545 * 179.72161 * 5 4 3 28 28 H 1.09000 * 109.47150 * 59.99475 * 11 9 7 29 29 H 1.08997 * 109.47134 * 179.97438 * 11 9 7 30 30 H 1.08998 * 109.46994 * 299.99780 * 11 9 7 31 31 H 0.96998 * 119.99645 * 179.97438 * 17 16 14 32 32 H 1.08003 * 120.09517 * 359.97438 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2753 2.3702 -0.0005 5 6 1.8619 3.6167 -0.0063 6 6 3.2551 3.7358 0.0001 7 6 3.8884 5.0553 0.0001 8 8 5.0949 5.1494 -0.0946 9 6 3.0427 6.2971 0.1177 10 1 2.1934 6.0976 0.7710 11 6 2.5362 6.7023 -1.2680 12 17 4.0329 7.6351 0.8108 13 6 4.0718 2.5172 0.0002 14 6 5.4776 2.5967 0.0007 15 1 5.9718 3.4169 0.5000 16 6 6.2366 1.6101 -0.6475 17 7 5.6458 0.7217 -1.4006 18 14 8.0917 1.5676 -0.4330 19 1 8.4359 0.7143 0.7327 20 1 8.7190 1.0090 -1.6577 21 1 8.5951 2.9457 -0.2034 22 6 3.4260 1.2685 -0.0005 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 0.1982 2.2917 -0.0014 27 1 1.2450 4.5031 -0.0111 28 1 1.9378 5.8934 -1.6870 29 1 1.9242 7.6002 -1.1828 30 1 3.3856 6.9018 -1.9212 31 1 6.1704 0.0400 -1.8489 32 1 4.0071 0.3582 -0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396064610.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:27 Heat of formation + Delta-G solvation = -89.058437 kcal Electronic energy + Delta-G solvation = -18129.196743 eV Core-core repulsion = 15079.955514 eV Total energy + Delta-G solvation = -3049.241230 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.71295 -39.84938 -37.53383 -36.84708 -35.61302 -33.59603 -31.58468 -30.85737 -28.40763 -27.12542 -25.54846 -23.49298 -22.53700 -20.25536 -19.66886 -18.03502 -17.44873 -17.14971 -16.60314 -16.38997 -15.90234 -15.70654 -15.40447 -14.81959 -14.46978 -13.98109 -13.74920 -13.40488 -13.26262 -13.10949 -12.95580 -12.88253 -12.70571 -12.56512 -12.46938 -11.96856 -11.75005 -11.58371 -11.43256 -11.28733 -11.13632 -10.04900 -9.39626 -8.91686 -8.67878 -6.52322 0.26198 0.94396 1.18176 1.32492 1.44797 1.49945 1.97167 2.15582 2.63696 2.73730 3.23160 3.56804 3.97629 4.01619 4.22171 4.47967 4.48431 4.50288 4.68963 4.73230 4.77583 4.88280 4.91255 5.09255 5.15124 5.19145 5.46069 5.69868 5.76575 5.97739 6.01897 6.44169 6.74508 6.78401 6.94631 7.12933 8.15999 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.012143 B = 0.009141 C = 0.005466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.271162 B = 3062.386285 C = 5121.461648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.349 6.349 3 C 0.154 3.846 4 C -0.319 4.319 5 C 0.000 4.000 6 C -0.337 4.337 7 C 0.383 3.617 8 O -0.493 6.493 9 C -0.037 4.037 10 H 0.143 0.857 11 C -0.144 4.144 12 Cl -0.180 7.180 13 C 0.143 3.857 14 C -0.442 4.442 15 H 0.089 0.911 16 C 0.031 3.969 17 N -0.802 5.802 18 Si 0.981 3.019 19 H -0.254 1.254 20 H -0.260 1.260 21 H -0.267 1.267 22 C -0.233 4.233 23 H 0.114 0.886 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.141 0.859 27 H 0.149 0.851 28 H 0.089 0.911 29 H 0.103 0.897 30 H 0.054 0.946 31 H 0.294 0.706 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.553 4.131 0.810 10.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.264 6.264 3 C 0.109 3.891 4 C -0.338 4.338 5 C -0.018 4.018 6 C -0.340 4.340 7 C 0.267 3.733 8 O -0.374 6.374 9 C -0.081 4.081 10 H 0.161 0.839 11 C -0.201 4.201 12 Cl -0.153 7.153 13 C 0.139 3.861 14 C -0.469 4.469 15 H 0.107 0.893 16 C -0.187 4.187 17 N -0.426 5.426 18 Si 0.801 3.199 19 H -0.178 1.178 20 H -0.184 1.184 21 H -0.191 1.191 22 C -0.253 4.253 23 H 0.133 0.867 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.159 0.841 27 H 0.166 0.834 28 H 0.108 0.892 29 H 0.122 0.878 30 H 0.073 0.927 31 H 0.105 0.895 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.763 3.891 0.646 9.610 hybrid contribution 0.762 -0.210 -0.011 0.790 sum -8.001 3.681 0.635 8.830 Atomic orbital electron populations 1.23234 0.77085 1.04796 1.02002 1.85969 1.23269 1.28326 1.88788 1.19225 0.91886 0.84370 0.93631 1.20762 0.99511 0.91549 1.21956 1.21072 0.92260 0.97304 0.91169 1.21079 0.94242 0.92692 1.26002 1.22111 0.88804 0.89419 0.72952 1.90490 1.17961 1.88940 1.40005 1.24716 0.95960 0.86388 1.01029 0.83934 1.22027 1.02119 1.04218 0.91736 1.98699 1.76328 1.53214 1.87085 1.18646 0.93090 0.89782 0.84566 1.20236 0.92099 1.07199 1.27390 0.89297 1.26968 1.06438 0.92713 0.92549 1.69759 1.40661 1.12177 1.20022 0.85213 0.75545 0.79601 0.79544 1.17809 1.18371 1.19104 1.20478 0.90883 0.98021 1.15927 0.86727 0.91823 0.92177 0.84130 0.83376 0.89190 0.87840 0.92667 0.89521 0.88141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 9.79 113.37 1.11 1.71 16 2 O -0.35 -14.02 10.47 -90.38 -0.95 -14.97 16 3 C 0.15 6.94 6.67 22.52 0.15 7.09 16 4 C -0.32 -11.98 8.97 22.41 0.20 -11.78 16 5 C 0.00 0.00 9.08 22.54 0.20 0.20 16 6 C -0.34 -15.54 6.06 -18.57 -0.11 -15.65 16 7 C 0.38 16.61 6.23 27.80 0.17 16.78 16 8 O -0.49 -25.43 13.67 -3.34 -0.05 -25.48 16 9 C -0.04 -1.14 2.95 29.85 0.09 -1.05 16 10 H 0.14 3.56 6.99 -2.39 -0.02 3.55 16 11 C -0.14 -3.59 9.23 71.98 0.66 -2.93 16 12 Cl -0.18 -5.91 28.00 -2.72 -0.08 -5.99 16 13 C 0.14 7.75 5.67 -19.87 -0.11 7.63 16 14 C -0.44 -24.79 7.87 23.41 0.18 -24.60 16 15 H 0.09 5.18 5.94 -2.91 -0.02 5.16 16 16 C 0.03 1.63 5.27 85.39 0.45 2.08 16 17 N -0.80 -42.37 11.02 21.89 0.24 -42.13 16 18 Si 0.98 40.45 29.57 68.60 2.03 42.48 16 19 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 20 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 21 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 22 C -0.23 -12.33 8.57 22.84 0.20 -12.14 16 23 H 0.11 2.28 8.14 -2.38 -0.02 2.27 16 24 H 0.06 1.46 7.62 -2.39 -0.02 1.44 16 25 H 0.06 1.42 7.62 -2.39 -0.02 1.40 16 26 H 0.14 4.12 6.16 -2.91 -0.02 4.10 16 27 H 0.15 3.94 6.21 -2.91 -0.02 3.93 16 28 H 0.09 2.09 7.52 -2.39 -0.02 2.07 16 29 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.29 13.95 8.29 -92.71 -0.77 13.18 16 32 H 0.10 5.73 6.46 -2.91 -0.02 5.71 16 Total: -1.00 -67.15 287.65 5.55 -61.60 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 1.15 Total: 17.12 kcal Atomic # 6 Polarization: -35.84 SS G_CDS: 3.20 Total: -32.65 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: 0.24 Total: -42.13 kcal Atomic # 8 Polarization: -39.45 SS G_CDS: -0.99 Total: -40.44 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.48 kcal Atomic # 17 Polarization: -5.91 SS G_CDS: -0.08 Total: -5.99 kcal Total: -67.15 5.55 -61.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396064610.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.454 kcal (2) G-P(sol) polarization free energy of solvation -67.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds