Wall clock time and date at job start Mon Mar 30 2020 06:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34719 * 116.99324 * 2 1 4 4 O 1.21467 * 119.99941 * 359.97438 * 3 2 1 5 5 C 1.47727 * 119.99798 * 179.97438 * 3 2 1 6 6 C 1.39648 * 120.14851 * 6.02729 * 5 3 2 7 7 C 1.37922 * 119.84878 * 179.97438 * 6 5 3 8 8 C 1.50703 * 119.92776 * 180.02562 * 7 6 5 9 9 C 1.50693 * 109.47244 * 89.99375 * 8 7 6 10 10 H 1.08004 * 120.00306 * 0.02562 * 9 8 7 11 11 C 1.37882 * 120.00010 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99870 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00228 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47130 * 90.00049 * 13 11 9 15 15 H 1.48496 * 109.47657 * 210.00328 * 13 11 9 16 16 H 1.48511 * 109.47147 * 330.00495 * 13 11 9 17 17 C 1.38394 * 120.14816 * 359.74198 * 7 6 5 18 18 C 1.38339 * 120.30059 * 0.51498 * 17 7 6 19 19 C 1.37971 * 120.15375 * 359.48970 * 18 17 7 20 20 C 1.50700 * 120.07679 * 180.27636 * 19 18 17 21 21 Cl 1.80298 * 109.46999 * 96.78231 * 20 19 18 22 22 H 1.08999 * 109.46998 * 60.00470 * 1 2 3 23 23 H 1.09002 * 109.46542 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47233 * 300.00032 * 1 2 3 25 25 H 1.08000 * 120.07703 * 359.95798 * 6 5 3 26 26 H 1.08997 * 109.47178 * 210.00011 * 8 7 6 27 27 H 1.09004 * 109.46422 * 329.99562 * 8 7 6 28 28 H 0.97003 * 120.00114 * 179.97438 * 12 11 9 29 29 H 1.08001 * 119.84610 * 180.25431 * 17 7 6 30 30 H 1.08007 * 119.92672 * 179.76099 * 18 17 7 31 31 H 1.08994 * 109.46867 * 216.77666 * 20 19 18 32 32 H 1.08998 * 109.47031 * 336.77937 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2004 0.0000 4 8 1.4018 2.2190 -0.0005 5 6 3.5387 1.2779 0.0006 6 6 4.3021 0.1154 -0.1257 7 6 5.6791 0.1949 -0.1249 8 6 6.5047 -1.0585 -0.2617 9 6 6.7719 -1.3274 -1.7201 10 1 6.3832 -0.6575 -2.4729 11 6 7.5136 -2.4281 -2.0936 12 7 7.9873 -3.2436 -1.1770 13 14 7.8455 -2.7611 -3.9014 14 1 9.1044 -2.0855 -4.3062 15 1 7.9766 -4.2241 -4.1195 16 1 6.7192 -2.2381 -4.7160 17 6 6.3043 1.4237 -0.0048 18 6 5.5541 2.5787 0.1260 19 6 4.1759 2.5136 0.1268 20 6 3.3604 3.7735 0.2631 21 17 2.8571 4.3433 -1.3717 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 3.8155 -0.8438 -0.2234 26 1 7.4510 -0.9292 0.2634 27 1 5.9619 -1.8998 0.1694 28 1 8.5088 -4.0181 -1.4398 29 1 7.3828 1.4807 -0.0089 30 1 6.0484 3.5341 0.2232 31 1 2.4751 3.5698 0.8653 32 1 3.9602 4.5438 0.7477 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396071844.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:30 Heat of formation + Delta-G solvation = -95.779726 kcal Electronic energy + Delta-G solvation = -17750.768230 eV Core-core repulsion = 14701.235544 eV Total energy + Delta-G solvation = -3049.532687 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.72741 -40.00845 -37.63388 -36.79839 -35.57963 -33.75286 -32.52286 -30.35118 -28.64939 -27.17599 -24.99786 -24.41818 -22.75750 -21.18516 -18.73538 -18.48699 -17.75615 -17.42219 -16.80043 -16.51244 -16.45749 -15.43308 -15.30091 -14.61995 -14.50155 -14.26291 -14.19403 -14.08494 -13.42059 -13.25867 -13.07337 -12.87291 -12.68133 -12.50235 -12.34434 -11.81887 -11.67206 -11.59867 -11.52991 -11.25727 -10.91701 -10.59623 -9.98607 -9.54652 -8.20676 -6.32752 -0.36606 0.28125 1.40847 1.41604 1.51207 1.53351 1.64363 1.72544 2.40333 2.87878 3.11589 3.53043 3.64417 3.84899 4.12741 4.25467 4.29962 4.35648 4.48007 4.52094 4.56756 4.69026 4.79815 4.99087 5.20756 5.26687 5.34047 5.35556 5.43855 5.74269 5.88171 5.91774 6.16986 6.67694 6.79678 7.36032 8.88829 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.019412 B = 0.005393 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.030350 B = 5190.773902 C = 5751.017559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.509 3.491 4 O -0.507 6.507 5 C -0.124 4.124 6 C -0.073 4.073 7 C -0.064 4.064 8 C 0.056 3.944 9 C -0.529 4.529 10 H 0.054 0.946 11 C 0.010 3.990 12 N -0.927 5.927 13 Si 0.959 3.041 14 H -0.270 1.270 15 H -0.280 1.280 16 H -0.269 1.269 17 C -0.089 4.089 18 C -0.099 4.099 19 C -0.070 4.070 20 C 0.016 3.984 21 Cl -0.190 7.190 22 H 0.063 0.937 23 H 0.127 0.873 24 H 0.070 0.930 25 H 0.126 0.874 26 H 0.015 0.985 27 H 0.008 0.992 28 H 0.266 0.734 29 H 0.137 0.863 30 H 0.167 0.833 31 H 0.115 0.885 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.619 11.511 4.327 16.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.282 6.282 3 C 0.356 3.644 4 O -0.398 6.398 5 C -0.125 4.125 6 C -0.091 4.091 7 C -0.064 4.064 8 C 0.019 3.981 9 C -0.567 4.567 10 H 0.072 0.928 11 C -0.189 4.189 12 N -0.566 5.566 13 Si 0.784 3.216 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.194 1.194 17 C -0.107 4.107 18 C -0.117 4.117 19 C -0.070 4.070 20 C -0.045 4.045 21 Cl -0.164 7.164 22 H 0.082 0.918 23 H 0.145 0.855 24 H 0.089 0.911 25 H 0.144 0.856 26 H 0.034 0.966 27 H 0.026 0.974 28 H 0.075 0.925 29 H 0.155 0.845 30 H 0.185 0.815 31 H 0.133 0.867 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.814 11.679 4.232 16.469 hybrid contribution 0.150 -0.773 -0.947 1.231 sum -10.664 10.906 3.285 15.603 Atomic orbital electron populations 1.23572 0.74121 1.05647 1.02868 1.86596 1.25498 1.32215 1.83870 1.21214 0.89043 0.81646 0.72523 1.90762 1.67063 1.35453 1.46540 1.19015 0.89131 0.94738 1.09611 1.21279 0.93455 0.97779 0.96603 1.20461 0.93869 0.96969 0.95132 1.18138 0.93801 0.89917 0.96275 1.21357 1.33248 1.09688 0.92446 0.92797 1.25822 0.95371 0.95724 1.01984 1.70056 1.36480 1.15163 1.34951 0.85534 0.78845 0.77429 0.79812 1.19585 1.20581 1.19381 1.21517 1.01228 0.91466 0.96451 1.21251 0.91746 0.99546 0.99177 1.19873 0.94441 0.92632 1.00089 1.23384 1.01405 0.94636 0.85114 1.98709 1.93266 1.90227 1.34157 0.91809 0.85458 0.91090 0.85605 0.96644 0.97373 0.92527 0.84507 0.81534 0.86680 0.85401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.81 16 2 O -0.37 -10.71 9.84 -56.29 -0.55 -11.26 16 3 C 0.51 16.06 7.83 70.33 0.55 16.61 16 4 O -0.51 -15.90 12.24 19.94 0.24 -15.65 16 5 C -0.12 -4.10 5.87 -20.10 -0.12 -4.22 16 6 C -0.07 -2.76 9.26 22.54 0.21 -2.55 16 7 C -0.06 -2.61 5.06 -19.90 -0.10 -2.71 16 8 C 0.06 2.79 5.10 29.10 0.15 2.94 16 9 C -0.53 -29.05 9.09 25.60 0.23 -28.81 16 10 H 0.05 2.94 7.74 -2.91 -0.02 2.91 16 11 C 0.01 0.54 5.46 84.66 0.46 1.00 16 12 N -0.93 -54.07 13.29 21.45 0.28 -53.78 16 13 Si 0.96 43.35 29.54 68.60 2.03 45.37 16 14 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 15 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 16 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 17 C -0.09 -2.99 9.69 22.33 0.22 -2.77 16 18 C -0.10 -2.68 9.66 22.23 0.21 -2.47 16 19 C -0.07 -1.99 5.29 -19.60 -0.10 -2.10 16 20 C 0.02 0.39 5.88 71.24 0.42 0.80 16 21 Cl -0.19 -5.30 28.11 -2.72 -0.08 -5.37 16 22 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.13 4.90 7.63 -2.91 -0.02 4.88 16 26 H 0.02 0.80 8.09 -2.39 -0.02 0.78 16 27 H 0.01 0.43 8.08 -2.39 -0.02 0.41 16 28 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 29 H 0.14 4.34 8.06 -2.91 -0.02 4.32 16 30 H 0.17 3.15 8.06 -2.91 -0.02 3.12 16 31 H 0.12 2.84 5.87 -2.39 -0.01 2.83 16 32 H 0.13 2.11 8.04 -2.39 -0.02 2.09 16 Total: -1.00 -64.05 297.38 6.38 -57.67 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: 1.13 Total: 5.49 kcal Atomic # 6 Polarization: -25.79 SS G_CDS: 3.33 Total: -22.47 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: 0.28 Total: -53.78 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.31 Total: -26.92 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 17 Polarization: -5.30 SS G_CDS: -0.08 Total: -5.37 kcal Total: -64.05 6.38 -57.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396071844.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.107 kcal (2) G-P(sol) polarization free energy of solvation -64.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds