Wall clock time and date at job start Mon Mar 30 2020 06:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45206 * 109.46644 * 2 1 4 4 C 1.34713 * 116.99802 * 180.02562 * 3 2 1 5 5 O 1.21473 * 120.00004 * 359.72734 * 4 3 2 6 6 C 1.47728 * 120.00105 * 179.97438 * 4 3 2 7 7 C 1.39648 * 120.14147 * 5.85342 * 6 4 3 8 8 C 1.37925 * 119.87634 * 179.74162 * 7 6 4 9 9 C 1.38369 * 120.16446 * 0.55646 * 8 7 6 10 10 C 1.38459 * 120.28611 * 359.69767 * 9 8 7 11 11 Cl 1.73607 * 119.93574 * 180.02562 * 10 9 8 12 12 C 1.38088 * 120.12661 * 0.02562 * 10 9 8 13 13 C 1.50702 * 120.08447 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.47143 * 95.69233 * 13 12 10 15 15 H 1.08004 * 120.00342 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99816 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00304 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99847 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47139 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.46876 * 120.00442 * 18 16 14 21 21 H 1.48499 * 109.46850 * 239.99889 * 18 16 14 22 22 H 1.08991 * 109.47450 * 60.00435 * 1 2 3 23 23 H 1.09007 * 109.46546 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47023 * 299.99629 * 1 2 3 25 25 H 1.08995 * 109.47023 * 240.00370 * 2 1 3 26 26 H 1.08994 * 109.47186 * 120.00016 * 2 1 3 27 27 H 1.08010 * 120.06174 * 359.97438 * 7 6 4 28 28 H 1.08000 * 119.92130 * 180.27419 * 8 7 6 29 29 H 1.08002 * 119.85715 * 179.71779 * 9 8 7 30 30 H 1.08998 * 109.46785 * 215.69416 * 13 12 10 31 31 H 1.09002 * 109.46791 * 335.69370 * 13 12 10 32 32 H 0.96998 * 120.00429 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3494 1.5456 -0.0005 5 8 4.0894 0.5823 0.0040 6 6 3.9140 2.9108 -0.0011 7 6 3.0719 4.0179 0.1220 8 6 3.6054 5.2898 0.1261 9 6 4.9711 5.4714 -0.0029 10 6 5.8118 4.3787 -0.1307 11 17 7.5239 4.6170 -0.2914 12 6 5.2910 3.0998 -0.1306 13 6 6.2070 1.9111 -0.2693 14 6 6.5405 1.3719 1.0978 15 1 6.1299 1.8425 1.9790 16 6 7.3690 0.2770 1.2237 17 7 7.8686 -0.2965 0.1508 18 14 7.7819 -0.3919 2.9183 19 1 7.0980 0.4248 3.9529 20 1 7.3250 -1.8013 3.0189 21 1 9.2505 -0.3314 3.1299 22 1 -0.3634 0.5137 -0.8899 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 2.0051 3.8783 0.2176 28 1 2.9552 6.1464 0.2258 29 1 5.3830 6.4697 -0.0036 30 1 5.7110 1.1366 -0.8543 31 1 7.1241 2.2160 -0.7733 32 1 8.4517 -1.0665 0.2393 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396072533.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:03 Heat of formation + Delta-G solvation = -69.552703 kcal Electronic energy + Delta-G solvation = -18175.754222 eV Core-core repulsion = 15127.358825 eV Total energy + Delta-G solvation = -3048.395398 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.08106 -38.48322 -36.03144 -35.75638 -33.30302 -31.74715 -31.28928 -30.42184 -27.21973 -24.45699 -23.11002 -22.60601 -20.99174 -20.16154 -17.50469 -16.44487 -16.22145 -15.94996 -15.35406 -15.02986 -14.51362 -14.26916 -13.83536 -13.20239 -12.96824 -12.71901 -12.60850 -11.99421 -11.72591 -11.65551 -11.42382 -11.35174 -11.13814 -10.93462 -10.75740 -10.60135 -10.20802 -10.11101 -9.61489 -9.37187 -9.13109 -8.51458 -8.20012 -8.01240 -5.88137 -3.86513 1.13038 1.70623 2.68328 3.12369 3.16511 3.37848 3.44309 3.48711 4.15254 4.57573 5.01643 5.08701 5.12364 5.17146 5.35978 5.43546 5.47629 5.53313 5.69823 5.77672 5.88951 5.97480 6.06302 6.25335 6.53531 6.60763 6.72855 6.90656 7.13018 7.66924 7.86693 8.03821 8.41582 8.51416 9.11603 9.72019 11.23664 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.012165 B = 0.009676 C = 0.005896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.211349 B = 2893.100549 C = 4747.724147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.063 3.937 3 O -0.368 6.368 4 C 0.486 3.514 5 O -0.438 6.438 6 C -0.120 4.120 7 C -0.065 4.065 8 C -0.152 4.152 9 C -0.082 4.082 10 C -0.054 4.054 11 Cl -0.059 7.059 12 C 0.031 3.969 13 C 0.034 3.966 14 C -0.479 4.479 15 H 0.049 0.951 16 C 0.064 3.936 17 N -0.891 5.891 18 Si 0.889 3.111 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.285 1.285 22 H 0.063 0.937 23 H 0.075 0.925 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.133 0.867 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.063 0.937 31 H 0.038 0.962 32 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.978 8.003 -1.442 14.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.011 4.011 3 O -0.288 6.288 4 C 0.328 3.672 5 O -0.321 6.321 6 C -0.121 4.121 7 C -0.083 4.083 8 C -0.170 4.170 9 C -0.101 4.101 10 C -0.081 4.081 11 Cl -0.029 7.029 12 C 0.030 3.970 13 C -0.002 4.002 14 C -0.518 4.518 15 H 0.067 0.933 16 C -0.137 4.137 17 N -0.531 5.531 18 Si 0.717 3.283 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.211 1.211 22 H 0.082 0.918 23 H 0.094 0.906 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.151 0.849 28 H 0.147 0.853 29 H 0.147 0.853 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.485 7.532 -1.506 13.817 hybrid contribution 0.406 -0.533 0.991 1.197 sum -11.079 6.999 -0.514 13.115 Atomic orbital electron populations 1.21778 0.93219 1.02529 1.03099 1.22890 0.94605 0.80875 1.02710 1.86481 1.24935 1.31632 1.85727 1.21076 0.80160 0.90354 0.75652 1.91064 1.58459 1.41665 1.40935 1.18834 0.92936 0.90254 1.10115 1.21420 0.99826 0.91722 0.95376 1.20825 0.94321 0.97002 1.04891 1.21205 0.93299 0.97855 0.97755 1.20666 0.85696 0.93923 1.07812 1.98347 1.11761 1.96740 1.96100 1.20793 0.93096 0.96113 0.87004 1.18853 0.92968 0.89168 0.99260 1.20646 1.27828 1.12847 0.90466 0.93257 1.24830 0.96187 0.96438 0.96253 1.69951 1.33209 1.22201 1.27729 0.86579 0.77921 0.78878 0.84883 1.19923 1.21146 1.21102 0.91759 0.90620 0.91744 0.91428 0.91313 0.84885 0.85278 0.85284 0.91982 0.94419 0.93239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.29 37.16 0.38 -1.12 16 2 C 0.06 0.91 6.20 37.16 0.23 1.14 16 3 O -0.37 -6.27 9.49 -40.53 -0.38 -6.65 16 4 C 0.49 10.08 7.83 34.61 0.27 10.35 16 5 O -0.44 -10.88 12.27 -19.25 -0.24 -11.11 16 6 C -0.12 -2.38 5.87 -104.99 -0.62 -3.00 16 7 C -0.07 -1.01 9.61 -39.17 -0.38 -1.38 16 8 C -0.15 -2.08 10.03 -39.65 -0.40 -2.48 16 9 C -0.08 -1.25 9.82 -39.45 -0.39 -1.64 16 10 C -0.05 -1.04 6.31 -39.55 -0.25 -1.29 16 11 Cl -0.06 -1.12 27.19 -51.86 -1.41 -2.53 16 12 C 0.03 0.68 5.11 -104.17 -0.53 0.15 16 13 C 0.03 0.89 4.07 -29.04 -0.12 0.78 16 14 C -0.48 -13.82 8.00 -34.44 -0.28 -14.09 16 15 H 0.05 1.43 7.74 -52.48 -0.41 1.03 16 16 C 0.06 1.87 5.46 -17.82 -0.10 1.78 16 17 N -0.89 -27.29 13.29 55.43 0.74 -26.55 16 18 Si 0.89 22.63 29.54 -169.99 -5.02 17.61 16 19 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.07 1.03 8.13 -51.93 -0.42 0.60 16 27 H 0.13 1.73 7.63 -52.48 -0.40 1.33 16 28 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 29 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 30 H 0.06 1.80 5.79 -51.93 -0.30 1.50 16 31 H 0.04 1.04 6.67 -51.93 -0.35 0.70 16 32 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 294.63 15.07 4.44 4.44 Total: -1.00 -32.58 294.63 -7.59 -40.17 By element: Atomic # 1 Polarization: -1.01 SS G_CDS: -3.55 Total: -4.56 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -2.17 Total: -10.81 kcal Atomic # 7 Polarization: -27.29 SS G_CDS: 0.74 Total: -26.55 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.62 Total: -17.76 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -1.41 Total: -2.53 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.58 -7.59 -40.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396072533.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.382 kcal (2) G-P(sol) polarization free energy of solvation -32.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds