Wall clock time and date at job start Mon Mar 30 2020 06:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45206 * 109.46644 * 2 1 4 4 C 1.34713 * 116.99802 * 180.02562 * 3 2 1 5 5 O 1.21473 * 120.00004 * 359.72734 * 4 3 2 6 6 C 1.47728 * 120.00105 * 179.97438 * 4 3 2 7 7 C 1.39648 * 120.14147 * 5.85342 * 6 4 3 8 8 C 1.37925 * 119.87634 * 179.74162 * 7 6 4 9 9 C 1.38369 * 120.16446 * 0.55646 * 8 7 6 10 10 C 1.38459 * 120.28611 * 359.69767 * 9 8 7 11 11 Cl 1.73607 * 119.93574 * 180.02562 * 10 9 8 12 12 C 1.38088 * 120.12661 * 0.02562 * 10 9 8 13 13 C 1.50702 * 120.08447 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.47143 * 95.69233 * 13 12 10 15 15 H 1.08004 * 120.00342 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99816 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00304 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99847 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47139 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.46876 * 120.00442 * 18 16 14 21 21 H 1.48499 * 109.46850 * 239.99889 * 18 16 14 22 22 H 1.08991 * 109.47450 * 60.00435 * 1 2 3 23 23 H 1.09007 * 109.46546 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47023 * 299.99629 * 1 2 3 25 25 H 1.08995 * 109.47023 * 240.00370 * 2 1 3 26 26 H 1.08994 * 109.47186 * 120.00016 * 2 1 3 27 27 H 1.08010 * 120.06174 * 359.97438 * 7 6 4 28 28 H 1.08000 * 119.92130 * 180.27419 * 8 7 6 29 29 H 1.08002 * 119.85715 * 179.71779 * 9 8 7 30 30 H 1.08998 * 109.46785 * 215.69416 * 13 12 10 31 31 H 1.09002 * 109.46791 * 335.69370 * 13 12 10 32 32 H 0.96998 * 120.00429 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3494 1.5456 -0.0005 5 8 4.0894 0.5823 0.0040 6 6 3.9140 2.9108 -0.0011 7 6 3.0719 4.0179 0.1220 8 6 3.6054 5.2898 0.1261 9 6 4.9711 5.4714 -0.0029 10 6 5.8118 4.3787 -0.1307 11 17 7.5239 4.6170 -0.2914 12 6 5.2910 3.0998 -0.1306 13 6 6.2070 1.9111 -0.2693 14 6 6.5405 1.3719 1.0978 15 1 6.1299 1.8425 1.9790 16 6 7.3690 0.2770 1.2237 17 7 7.8686 -0.2965 0.1508 18 14 7.7819 -0.3919 2.9183 19 1 7.0980 0.4248 3.9529 20 1 7.3250 -1.8013 3.0189 21 1 9.2505 -0.3314 3.1299 22 1 -0.3634 0.5137 -0.8899 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 2.0051 3.8783 0.2176 28 1 2.9552 6.1464 0.2258 29 1 5.3830 6.4697 -0.0036 30 1 5.7110 1.1366 -0.8543 31 1 7.1241 2.2160 -0.7733 32 1 8.4517 -1.0665 0.2393 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396072533.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:03 Heat of formation + Delta-G solvation = -88.677251 kcal Electronic energy + Delta-G solvation = -18176.583525 eV Core-core repulsion = 15127.358825 eV Total energy + Delta-G solvation = -3049.224700 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.59544 -39.88180 -37.55000 -37.21690 -35.32131 -33.10242 -32.88599 -31.67920 -29.07454 -26.00822 -24.87068 -23.78572 -22.48284 -21.64608 -18.94275 -18.52720 -17.72450 -17.44111 -16.84813 -16.46927 -16.25993 -15.78130 -15.21435 -14.55182 -14.50437 -14.28178 -13.81979 -13.64851 -13.32822 -13.11178 -12.87422 -12.73530 -12.64516 -12.51487 -12.39399 -12.33352 -11.97532 -11.53831 -11.43217 -11.34366 -10.92461 -10.39865 -9.90533 -9.51923 -8.11673 -6.16668 -0.25418 0.32637 1.26133 1.33670 1.34819 1.46357 1.64176 1.77776 2.41210 2.77965 3.22762 3.75257 3.96718 4.03508 4.06569 4.15930 4.18601 4.39028 4.39760 4.62303 4.87696 4.94781 4.96553 5.12856 5.16477 5.30491 5.31953 5.39655 5.52563 5.80006 5.81252 5.88738 6.23816 6.86153 6.98691 7.45034 9.00462 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.012165 B = 0.009676 C = 0.005896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.211349 B = 2893.100549 C = 4747.724147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.053 3.947 3 O -0.355 6.355 4 C 0.486 3.514 5 O -0.495 6.495 6 C -0.144 4.144 7 C -0.051 4.051 8 C -0.124 4.124 9 C -0.067 4.067 10 C -0.072 4.072 11 Cl -0.072 7.072 12 C -0.009 4.009 13 C 0.048 3.952 14 C -0.481 4.481 15 H 0.039 0.961 16 C 0.006 3.994 17 N -0.929 5.929 18 Si 0.951 3.049 19 H -0.267 1.267 20 H -0.283 1.283 21 H -0.274 1.274 22 H 0.074 0.926 23 H 0.098 0.902 24 H 0.073 0.927 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.166 0.834 28 H 0.187 0.813 29 H 0.167 0.833 30 H 0.026 0.974 31 H 0.014 0.986 32 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.635 10.592 -0.330 18.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.021 4.021 3 O -0.273 6.273 4 C 0.331 3.669 5 O -0.382 6.382 6 C -0.145 4.145 7 C -0.069 4.069 8 C -0.142 4.142 9 C -0.086 4.086 10 C -0.098 4.098 11 Cl -0.043 7.043 12 C -0.010 4.010 13 C 0.011 3.989 14 C -0.519 4.519 15 H 0.058 0.942 16 C -0.191 4.191 17 N -0.570 5.570 18 Si 0.776 3.224 19 H -0.191 1.191 20 H -0.209 1.209 21 H -0.200 1.200 22 H 0.093 0.907 23 H 0.117 0.883 24 H 0.092 0.908 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.183 0.817 28 H 0.204 0.796 29 H 0.185 0.815 30 H 0.044 0.956 31 H 0.032 0.968 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.174 10.146 -0.390 17.436 hybrid contribution 1.077 -1.239 0.603 1.749 sum -13.098 8.907 0.214 15.841 Atomic orbital electron populations 1.21784 0.89179 1.04392 1.04052 1.23242 0.97611 0.79487 1.01772 1.86473 1.22758 1.33223 1.84868 1.21492 0.80911 0.90478 0.74021 1.91042 1.59925 1.43430 1.43851 1.18979 0.92660 0.91145 1.11725 1.21808 1.00820 0.91009 0.93296 1.21479 0.94080 0.97807 1.00815 1.21686 0.93634 0.98071 0.95172 1.20870 0.85677 0.94154 1.09123 1.98335 1.13053 1.96634 1.96271 1.20457 0.93697 0.95637 0.91223 1.18396 0.92637 0.90397 0.97436 1.20860 1.27099 1.12625 0.91341 0.94245 1.25685 0.96388 0.96961 1.00026 1.70083 1.34225 1.22850 1.29889 0.85612 0.78139 0.78126 0.80490 1.19136 1.20871 1.19965 0.90686 0.88319 0.90804 0.92338 0.92569 0.81663 0.79619 0.81530 0.95635 0.96825 0.93221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 10.29 71.98 0.74 -1.69 16 2 C 0.05 1.50 6.20 71.98 0.45 1.95 16 3 O -0.36 -11.88 9.49 -56.22 -0.53 -12.41 16 4 C 0.49 20.74 7.83 70.33 0.55 21.29 16 5 O -0.49 -26.21 12.27 19.92 0.24 -25.96 16 6 C -0.14 -5.65 5.87 -20.10 -0.12 -5.77 16 7 C -0.05 -1.39 9.61 22.54 0.22 -1.17 16 8 C -0.12 -2.66 10.03 22.23 0.22 -2.44 16 9 C -0.07 -1.76 9.82 22.35 0.22 -1.54 16 10 C -0.07 -2.70 6.31 22.29 0.14 -2.56 16 11 Cl -0.07 -2.78 27.19 -2.72 -0.07 -2.86 16 12 C -0.01 -0.41 5.11 -19.57 -0.10 -0.51 16 13 C 0.05 2.70 4.07 29.10 0.12 2.82 16 14 C -0.48 -29.03 8.00 25.60 0.20 -28.82 16 15 H 0.04 2.38 7.74 -2.91 -0.02 2.36 16 16 C 0.01 0.39 5.46 84.66 0.46 0.85 16 17 N -0.93 -59.71 13.29 21.45 0.28 -59.43 16 18 Si 0.95 47.78 29.54 68.60 2.03 49.81 16 19 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 20 H -0.28 -13.98 7.11 99.48 0.71 -13.27 16 21 H -0.27 -13.20 7.11 99.48 0.71 -12.49 16 22 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 24 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.06 1.73 8.13 -2.39 -0.02 1.71 16 27 H 0.17 3.41 7.63 -2.91 -0.02 3.39 16 28 H 0.19 2.07 8.06 -2.91 -0.02 2.05 16 29 H 0.17 3.15 8.06 -2.91 -0.02 3.13 16 30 H 0.03 1.62 5.79 -2.39 -0.01 1.60 16 31 H 0.01 0.81 6.67 -2.39 -0.02 0.79 16 32 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -77.29 294.63 6.18 -71.10 By element: Atomic # 1 Polarization: -3.79 SS G_CDS: 1.13 Total: -2.66 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: 3.10 Total: -17.59 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: 0.28 Total: -59.43 kcal Atomic # 8 Polarization: -38.09 SS G_CDS: -0.29 Total: -38.38 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 2.03 Total: 49.81 kcal Atomic # 17 Polarization: -2.78 SS G_CDS: -0.07 Total: -2.86 kcal Total: -77.29 6.18 -71.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396072533.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.575 kcal (2) G-P(sol) polarization free energy of solvation -77.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds