Wall clock time and date at job start Mon Mar 30 2020 06:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34705 * 116.99724 * 2 1 4 4 O 1.21470 * 120.00581 * 359.97438 * 3 2 1 5 5 C 1.47732 * 119.99584 * 179.97438 * 3 2 1 6 6 C 1.39649 * 120.14957 * 353.92973 * 5 3 2 7 7 C 1.37925 * 119.84645 * 179.97438 * 6 5 3 8 8 C 1.38390 * 120.15024 * 359.97438 * 7 6 5 9 9 C 1.50702 * 119.84586 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47313 * 90.00108 * 9 8 7 11 11 H 1.08007 * 119.99655 * 359.97438 * 10 9 8 12 12 C 1.37872 * 119.99973 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99992 * 180.02562 * 12 10 9 14 14 Si 1.86795 * 120.00243 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.47426 * 89.99840 * 14 12 10 16 16 H 1.48503 * 109.47007 * 209.99825 * 14 12 10 17 17 H 1.48505 * 109.46845 * 329.99507 * 14 12 10 18 18 C 1.38345 * 120.30537 * 359.74905 * 8 7 6 19 19 C 1.37966 * 120.14798 * 0.50689 * 18 8 7 20 20 C 1.50705 * 120.07943 * 179.77152 * 19 18 8 21 21 Cl 1.80294 * 109.47078 * 262.71408 * 20 19 18 22 22 H 1.09000 * 109.47141 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47601 * 300.00251 * 1 2 3 24 24 H 1.09004 * 109.47133 * 60.00161 * 1 2 3 25 25 H 1.07999 * 120.07541 * 359.97438 * 6 5 3 26 26 H 1.07997 * 119.92591 * 180.02562 * 7 6 5 27 27 H 1.09008 * 109.46921 * 210.00026 * 9 8 7 28 28 H 1.09002 * 109.47489 * 329.99575 * 9 8 7 29 29 H 0.96995 * 120.00501 * 180.02562 * 13 12 10 30 30 H 1.07996 * 119.92767 * 180.25636 * 18 8 7 31 31 H 1.08994 * 109.47166 * 142.71057 * 20 19 18 32 32 H 1.08997 * 109.46699 * 22.71176 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5388 1.2775 0.0006 6 6 4.3020 0.1151 0.1288 7 6 5.6790 0.1944 0.1280 8 6 6.3044 1.4223 0.0000 9 6 7.8094 1.5010 -0.0005 10 6 8.3184 1.3762 -1.4134 11 1 7.6218 1.2519 -2.2294 12 6 9.6734 1.4207 -1.6644 13 7 10.1176 1.3124 -2.8976 14 14 10.8782 1.6350 -0.2532 15 1 11.2707 0.3016 0.2694 16 1 12.0853 2.3518 -0.7374 17 1 10.2365 2.4221 0.8303 18 6 5.5545 2.5772 -0.1331 19 6 4.1763 2.5129 -0.1286 20 6 3.3609 3.7725 -0.2686 21 17 2.8513 4.3431 1.3640 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 3.8152 -0.8438 0.2284 26 1 6.2705 -0.7038 0.2267 27 1 8.1233 2.4584 0.4156 28 1 8.2158 0.6909 0.6050 29 1 11.0708 1.3433 -3.0742 30 1 6.0489 3.5317 -0.2368 31 1 2.4780 3.5683 -0.8742 32 1 3.9623 4.5428 -0.7513 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396075117.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:48 Heat of formation + Delta-G solvation = -77.454695 kcal Electronic energy + Delta-G solvation = -17671.502408 eV Core-core repulsion = 14622.764354 eV Total energy + Delta-G solvation = -3048.738054 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.56028 -38.79724 -36.48505 -35.65107 -33.76765 -32.13068 -31.67956 -28.73467 -27.47124 -26.49537 -23.87274 -21.76932 -21.61791 -19.86741 -17.75838 -16.90683 -16.88411 -16.35653 -15.26054 -15.04418 -14.49466 -14.30297 -14.13731 -13.49472 -13.27659 -13.14999 -12.87637 -12.57384 -12.25795 -12.14610 -11.78745 -11.59632 -11.10026 -10.84903 -10.66492 -10.51125 -10.34902 -10.14070 -10.12449 -9.75719 -9.51940 -8.69569 -8.59001 -8.23903 -6.18408 -4.19716 0.92020 1.52739 2.72167 2.73757 2.79427 3.21580 3.30440 3.31808 4.14508 4.31725 4.68761 4.80582 4.97247 5.01224 5.08960 5.14139 5.29803 5.39392 5.58410 5.60273 5.70875 5.82335 6.07540 6.20791 6.38202 6.53372 6.67525 6.72708 6.83588 7.19900 7.29414 7.54101 7.82359 8.34693 8.84890 9.40483 10.94064 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.025129 B = 0.004984 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.975038 B = 5617.007852 C = 6290.740519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.357 6.357 3 C 0.509 3.491 4 O -0.502 6.502 5 C -0.142 4.142 6 C -0.061 4.061 7 C -0.128 4.128 8 C 0.012 3.988 9 C 0.008 3.992 10 C -0.519 4.519 11 H 0.075 0.925 12 C 0.073 3.927 13 N -0.896 5.896 14 Si 0.877 3.123 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.264 1.264 18 C -0.115 4.115 19 C -0.044 4.044 20 C 0.009 3.991 21 Cl -0.177 7.177 22 H 0.099 0.901 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.133 0.867 26 H 0.132 0.868 27 H 0.034 0.966 28 H 0.030 0.970 29 H 0.266 0.734 30 H 0.133 0.867 31 H 0.118 0.882 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.208 -0.676 6.660 16.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.274 6.274 3 C 0.356 3.644 4 O -0.392 6.392 5 C -0.144 4.144 6 C -0.079 4.079 7 C -0.146 4.146 8 C 0.012 3.988 9 C -0.029 4.029 10 C -0.557 4.557 11 H 0.093 0.907 12 C -0.130 4.130 13 N -0.533 5.533 14 Si 0.704 3.296 15 H -0.200 1.200 16 H -0.211 1.211 17 H -0.188 1.188 18 C -0.133 4.133 19 C -0.045 4.045 20 C -0.053 4.053 21 Cl -0.150 7.150 22 H 0.117 0.883 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.151 0.849 26 H 0.150 0.850 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.076 0.924 30 H 0.151 0.849 31 H 0.136 0.864 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.320 -0.338 6.662 16.709 hybrid contribution 0.561 0.084 0.581 0.812 sum -14.759 -0.254 7.242 16.442 Atomic orbital electron populations 1.23218 0.76456 1.03422 1.02466 1.86557 1.23157 1.33057 1.84587 1.21314 0.89228 0.81238 0.72618 1.90787 1.66994 1.35292 1.46124 1.18673 0.88332 0.94634 1.12743 1.21339 0.93967 0.97133 0.95491 1.21168 0.93620 0.98384 1.01455 1.20628 0.98263 0.91919 0.88003 1.18948 0.86760 0.98107 0.99065 1.20835 0.92757 1.51395 0.90685 0.90660 1.24974 0.98191 0.94256 0.95552 1.69886 1.14616 1.49728 1.19107 0.86815 0.80946 0.78896 0.82943 1.20037 1.21120 1.18845 1.20945 0.91395 0.99638 1.01316 1.19688 0.93898 0.92430 0.98490 1.23320 1.01201 0.94915 0.85850 1.98695 1.92918 1.90240 1.33140 0.88293 0.91962 0.91989 0.84939 0.85010 0.94808 0.95197 0.92402 0.84921 0.86389 0.88614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.63 9.84 -40.51 -0.40 -5.03 16 3 C 0.51 7.63 7.83 34.61 0.27 7.90 16 4 O -0.50 -7.96 12.23 -19.24 -0.24 -8.19 16 5 C -0.14 -2.26 5.87 -104.98 -0.62 -2.87 16 6 C -0.06 -0.93 9.62 -39.17 -0.38 -1.31 16 7 C -0.13 -2.18 9.68 -39.64 -0.38 -2.56 16 8 C 0.01 0.23 5.08 -104.53 -0.53 -0.30 16 9 C 0.01 0.18 4.16 -29.04 -0.12 0.06 16 10 C -0.52 -13.83 9.65 -34.44 -0.33 -14.16 16 11 H 0.08 2.20 7.98 -52.48 -0.42 1.78 16 12 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 13 N -0.90 -26.37 13.96 55.43 0.77 -25.59 16 14 Si 0.88 20.35 27.47 -169.99 -4.67 15.68 16 15 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.26 -5.84 6.54 56.52 0.37 -5.47 16 18 C -0.11 -2.02 9.31 -39.64 -0.37 -2.38 16 19 C -0.04 -0.72 5.29 -104.21 -0.55 -1.27 16 20 C 0.01 0.13 5.88 36.01 0.21 0.34 16 21 Cl -0.18 -2.67 28.08 -51.86 -1.46 -4.13 16 22 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.13 1.69 7.63 -52.49 -0.40 1.29 16 26 H 0.13 2.08 8.06 -52.49 -0.42 1.65 16 27 H 0.03 0.74 7.14 -51.92 -0.37 0.37 16 28 H 0.03 0.64 7.51 -51.93 -0.39 0.25 16 29 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.13 2.21 8.05 -52.49 -0.42 1.79 16 31 H 0.12 1.71 5.89 -51.93 -0.31 1.40 16 32 H 0.10 1.20 8.03 -51.93 -0.42 0.79 16 LS Contribution 293.75 15.07 4.43 4.43 Total: -1.00 -29.85 293.75 -6.97 -36.82 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -3.58 Total: -0.77 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: -1.83 Total: -13.22 kcal Atomic # 7 Polarization: -26.37 SS G_CDS: 0.77 Total: -25.59 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -0.63 Total: -13.22 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.67 Total: 15.68 kcal Atomic # 17 Polarization: -2.67 SS G_CDS: -1.46 Total: -4.13 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.85 -6.97 -36.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396075117.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.630 kcal (2) G-P(sol) polarization free energy of solvation -29.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds