Wall clock time and date at job start Mon Mar 30 2020 06:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34716 * 117.00312 * 2 1 4 4 O 1.21474 * 119.99636 * 0.02562 * 3 2 1 5 5 C 1.47727 * 120.00364 * 180.02562 * 3 2 1 6 6 C 1.39646 * 120.14917 * 5.65893 * 5 3 2 7 7 C 1.37918 * 119.84822 * 179.97438 * 6 5 3 8 8 C 1.38391 * 120.14976 * 0.02562 * 7 6 5 9 9 C 1.50705 * 119.84968 * 180.02562 * 8 7 6 10 10 Cl 1.80301 * 109.47243 * 270.00408 * 9 8 7 11 11 C 1.38345 * 120.30189 * 359.74824 * 8 7 6 12 12 C 1.37965 * 120.15102 * 0.50547 * 11 8 7 13 13 C 1.50703 * 120.07924 * 179.77234 * 12 11 8 14 14 C 1.50698 * 109.46973 * 100.65419 * 13 12 11 15 15 H 1.07997 * 120.00352 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99719 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99834 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99937 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46946 * 60.00645 * 18 16 14 20 20 H 1.48494 * 109.47222 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47213 * 300.00776 * 18 16 14 22 22 H 1.08998 * 109.47375 * 59.99683 * 1 2 3 23 23 H 1.09000 * 109.46999 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47124 * 299.99444 * 1 2 3 25 25 H 1.07997 * 120.07444 * 0.02562 * 6 5 3 26 26 H 1.08004 * 119.93025 * 180.02562 * 7 6 5 27 27 H 1.09006 * 109.46502 * 30.00213 * 9 8 7 28 28 H 1.08996 * 109.46961 * 150.00211 * 9 8 7 29 29 H 1.08001 * 119.92179 * 180.25396 * 11 8 7 30 30 H 1.09001 * 109.46570 * 340.66261 * 13 12 11 31 31 H 1.09000 * 109.47089 * 220.66266 * 13 12 11 32 32 H 0.97001 * 119.99826 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2191 0.0005 5 6 3.5388 1.2776 -0.0006 6 6 4.3021 0.1144 -0.1202 7 6 5.6790 0.1938 -0.1205 8 6 6.3044 1.4227 -0.0022 9 6 7.8093 1.5017 -0.0039 10 17 8.4204 1.3647 1.6869 11 6 5.5543 2.5795 0.1120 12 6 4.1762 2.5140 0.1190 13 6 3.3607 3.7746 0.2486 14 6 2.8546 4.1873 -1.1095 15 1 3.0986 3.5957 -1.9795 16 6 2.0791 5.3197 -1.2413 17 7 1.7815 6.0399 -0.1819 18 14 1.4511 5.8309 -2.9247 19 1 0.6037 4.7484 -3.4865 20 1 0.6476 7.0732 -2.7970 21 1 2.6029 6.0775 -3.8288 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 3.8153 -0.8452 -0.2130 26 1 6.2706 -0.7050 -0.2134 27 1 8.2152 0.6872 -0.6041 28 1 8.1225 2.4560 -0.4272 29 1 6.0487 3.5356 0.1999 30 1 3.9829 4.5689 0.6612 31 1 2.5151 3.5937 0.9121 32 1 1.2362 6.8368 -0.2747 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396075343.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:14 Heat of formation + Delta-G solvation = -74.876954 kcal Electronic energy + Delta-G solvation = -18006.354872 eV Core-core repulsion = 14957.728597 eV Total energy + Delta-G solvation = -3048.626275 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.03454 -38.56404 -36.05565 -35.68655 -33.43936 -32.24852 -31.23578 -28.02343 -27.29604 -26.34373 -23.40848 -22.35689 -21.10693 -19.65260 -17.34115 -16.42914 -16.21362 -15.67290 -15.13299 -15.03232 -14.41173 -14.38520 -14.13038 -13.35954 -12.97054 -12.94913 -12.60789 -12.17601 -11.91710 -11.64179 -11.58337 -11.34601 -11.02732 -10.71043 -10.55451 -10.44135 -10.36659 -10.21616 -9.69949 -9.44868 -9.12817 -8.52066 -8.27004 -8.07467 -5.92604 -3.91396 1.01810 1.85074 2.41415 3.24040 3.28682 3.36854 3.40385 3.43365 4.27885 4.54496 4.65377 4.82425 5.22011 5.25442 5.38803 5.43013 5.46408 5.51309 5.53339 5.77791 5.82945 5.96770 6.20190 6.42981 6.62499 6.77176 6.84025 6.98194 7.29525 7.59960 7.83392 7.99410 8.38621 8.55443 9.06492 9.67580 11.19105 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.015662 B = 0.006693 C = 0.005110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.339336 B = 4182.297875 C = 5478.027917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.372 6.372 3 C 0.478 3.522 4 O -0.434 6.434 5 C -0.117 4.117 6 C -0.070 4.070 7 C -0.142 4.142 8 C -0.083 4.083 9 C 0.012 3.988 10 Cl -0.183 7.183 11 C -0.115 4.115 12 C 0.024 3.976 13 C 0.043 3.957 14 C -0.484 4.484 15 H 0.049 0.951 16 C 0.063 3.937 17 N -0.893 5.893 18 Si 0.891 3.109 19 H -0.279 1.279 20 H -0.287 1.287 21 H -0.278 1.278 22 H 0.060 0.940 23 H 0.092 0.908 24 H 0.059 0.941 25 H 0.131 0.869 26 H 0.122 0.878 27 H 0.100 0.900 28 H 0.103 0.897 29 H 0.130 0.870 30 H 0.025 0.975 31 H 0.057 0.943 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.143 -12.726 0.508 14.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.291 6.291 3 C 0.320 3.680 4 O -0.317 6.317 5 C -0.119 4.119 6 C -0.088 4.088 7 C -0.160 4.160 8 C -0.084 4.084 9 C -0.050 4.050 10 Cl -0.156 7.156 11 C -0.133 4.133 12 C 0.023 3.977 13 C 0.006 3.994 14 C -0.522 4.522 15 H 0.067 0.933 16 C -0.138 4.138 17 N -0.533 5.533 18 Si 0.719 3.281 19 H -0.204 1.204 20 H -0.213 1.213 21 H -0.204 1.204 22 H 0.079 0.921 23 H 0.111 0.889 24 H 0.078 0.922 25 H 0.148 0.852 26 H 0.140 0.860 27 H 0.118 0.882 28 H 0.121 0.879 29 H 0.148 0.852 30 H 0.043 0.957 31 H 0.075 0.925 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.849 -12.239 0.688 14.042 hybrid contribution -0.621 0.315 -0.929 1.161 sum 6.229 -11.924 -0.241 13.455 Atomic orbital electron populations 1.23100 0.77189 1.02575 1.02539 1.86491 1.22612 1.34099 1.85891 1.21279 0.89405 0.81430 0.75857 1.91089 1.65947 1.34113 1.40585 1.19032 0.89214 0.94380 1.09230 1.21296 0.93529 0.97667 0.96283 1.20715 0.94317 0.96594 1.04357 1.19865 0.93584 0.94289 1.00635 1.23206 0.92542 1.05555 0.83705 1.98727 1.89152 1.98936 1.28829 1.20952 0.93202 0.97673 1.01497 1.20897 0.93662 0.95917 0.87201 1.18652 0.94696 0.87041 0.98974 1.20653 1.31504 1.08487 0.91593 0.93295 1.24856 0.95966 0.96592 0.96353 1.69933 1.38307 1.16566 1.28480 0.86679 0.78941 0.77782 0.84688 1.20436 1.21294 1.20390 0.92133 0.88919 0.92225 0.85156 0.85996 0.88197 0.87902 0.85213 0.95705 0.92497 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 10.56 101.05 1.07 1.63 16 2 O -0.37 -6.44 9.83 -40.54 -0.40 -6.84 16 3 C 0.48 10.03 7.82 34.61 0.27 10.30 16 4 O -0.43 -10.86 12.01 -19.25 -0.23 -11.10 16 5 C -0.12 -2.32 5.86 -104.98 -0.62 -2.94 16 6 C -0.07 -1.10 9.62 -39.17 -0.38 -1.47 16 7 C -0.14 -1.97 9.68 -39.64 -0.38 -2.35 16 8 C -0.08 -1.21 5.26 -104.52 -0.55 -1.76 16 9 C 0.01 0.14 6.78 36.01 0.24 0.38 16 10 Cl -0.18 -2.28 29.13 -51.86 -1.51 -3.79 16 11 C -0.11 -2.06 9.30 -39.64 -0.37 -2.43 16 12 C 0.02 0.51 5.11 -104.21 -0.53 -0.03 16 13 C 0.04 1.11 4.40 -29.03 -0.13 0.99 16 14 C -0.48 -13.74 7.50 -34.44 -0.26 -14.00 16 15 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 16 C 0.06 1.84 5.46 -17.82 -0.10 1.74 16 17 N -0.89 -27.11 13.29 55.43 0.74 -26.37 16 18 Si 0.89 22.27 29.54 -169.99 -5.02 17.25 16 19 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 22 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.13 1.76 7.63 -52.49 -0.40 1.36 16 26 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 27 H 0.10 0.87 8.08 -51.93 -0.42 0.45 16 28 H 0.10 1.03 8.08 -51.93 -0.42 0.61 16 29 H 0.13 2.22 8.03 -52.49 -0.42 1.80 16 30 H 0.02 0.67 8.00 -51.93 -0.42 0.25 16 31 H 0.06 1.63 6.17 -51.93 -0.32 1.31 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 296.98 15.07 4.48 4.48 Total: -1.00 -32.40 296.98 -7.31 -39.71 By element: Atomic # 1 Polarization: 0.23 SS G_CDS: -3.63 Total: -3.40 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -1.73 Total: -9.94 kcal Atomic # 7 Polarization: -27.11 SS G_CDS: 0.74 Total: -26.37 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.63 Total: -17.94 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Atomic # 17 Polarization: -2.28 SS G_CDS: -1.51 Total: -3.79 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.40 -7.31 -39.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396075343.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.169 kcal (2) G-P(sol) polarization free energy of solvation -32.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds