Wall clock time and date at job start Mon Mar 30 2020 06:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34716 * 117.00312 * 2 1 4 4 O 1.21474 * 119.99636 * 0.02562 * 3 2 1 5 5 C 1.47727 * 120.00364 * 180.02562 * 3 2 1 6 6 C 1.39646 * 120.14917 * 5.65893 * 5 3 2 7 7 C 1.37918 * 119.84822 * 179.97438 * 6 5 3 8 8 C 1.38391 * 120.14976 * 0.02562 * 7 6 5 9 9 C 1.50705 * 119.84968 * 180.02562 * 8 7 6 10 10 Cl 1.80301 * 109.47243 * 270.00408 * 9 8 7 11 11 C 1.38345 * 120.30189 * 359.74824 * 8 7 6 12 12 C 1.37965 * 120.15102 * 0.50547 * 11 8 7 13 13 C 1.50703 * 120.07924 * 179.77234 * 12 11 8 14 14 C 1.50698 * 109.46973 * 100.65419 * 13 12 11 15 15 H 1.07997 * 120.00352 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99719 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99834 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99937 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46946 * 60.00645 * 18 16 14 20 20 H 1.48494 * 109.47222 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47213 * 300.00776 * 18 16 14 22 22 H 1.08998 * 109.47375 * 59.99683 * 1 2 3 23 23 H 1.09000 * 109.46999 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47124 * 299.99444 * 1 2 3 25 25 H 1.07997 * 120.07444 * 0.02562 * 6 5 3 26 26 H 1.08004 * 119.93025 * 180.02562 * 7 6 5 27 27 H 1.09006 * 109.46502 * 30.00213 * 9 8 7 28 28 H 1.08996 * 109.46961 * 150.00211 * 9 8 7 29 29 H 1.08001 * 119.92179 * 180.25396 * 11 8 7 30 30 H 1.09001 * 109.46570 * 340.66261 * 13 12 11 31 31 H 1.09000 * 109.47089 * 220.66266 * 13 12 11 32 32 H 0.97001 * 119.99826 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2191 0.0005 5 6 3.5388 1.2776 -0.0006 6 6 4.3021 0.1144 -0.1202 7 6 5.6790 0.1938 -0.1205 8 6 6.3044 1.4227 -0.0022 9 6 7.8093 1.5017 -0.0039 10 17 8.4204 1.3647 1.6869 11 6 5.5543 2.5795 0.1120 12 6 4.1762 2.5140 0.1190 13 6 3.3607 3.7746 0.2486 14 6 2.8546 4.1873 -1.1095 15 1 3.0986 3.5957 -1.9795 16 6 2.0791 5.3197 -1.2413 17 7 1.7815 6.0399 -0.1819 18 14 1.4511 5.8309 -2.9247 19 1 0.6037 4.7484 -3.4865 20 1 0.6476 7.0732 -2.7970 21 1 2.6029 6.0775 -3.8288 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 3.8153 -0.8452 -0.2130 26 1 6.2706 -0.7050 -0.2134 27 1 8.2152 0.6872 -0.6041 28 1 8.1225 2.4560 -0.4272 29 1 6.0487 3.5356 0.1999 30 1 3.9829 4.5689 0.6612 31 1 2.5151 3.5937 0.9121 32 1 1.2362 6.8368 -0.2747 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396075343.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:11 Heat of formation + Delta-G solvation = -93.825891 kcal Electronic energy + Delta-G solvation = -18007.176560 eV Core-core repulsion = 14957.728597 eV Total energy + Delta-G solvation = -3049.447962 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.54560 -39.93728 -37.42242 -36.85167 -35.36743 -33.69513 -32.86509 -29.32586 -29.05114 -27.52823 -25.35519 -23.64284 -22.66163 -21.11100 -18.78758 -18.51713 -17.75740 -17.18765 -16.69735 -16.37656 -16.02306 -15.49877 -15.36261 -14.61204 -14.51939 -14.30556 -14.08358 -13.92295 -13.37475 -13.19468 -13.04787 -12.88868 -12.73700 -12.63708 -12.31500 -11.67598 -11.57419 -11.54980 -11.44128 -11.26000 -10.89457 -10.45850 -9.84202 -9.58072 -8.13502 -6.19425 -0.32186 0.51486 1.31751 1.34425 1.38229 1.45069 1.84705 1.89406 2.41292 2.93837 3.20710 3.55457 3.82173 3.98096 4.05222 4.28288 4.35075 4.38513 4.40053 4.57783 4.64167 4.71281 4.86946 5.08928 5.20114 5.31535 5.37895 5.45542 5.51534 5.78679 5.89944 5.95907 6.23247 6.84845 7.01141 7.43211 8.98409 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.015662 B = 0.006693 C = 0.005110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.339336 B = 4182.297875 C = 5478.027917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.361 6.361 3 C 0.479 3.521 4 O -0.492 6.492 5 C -0.143 4.143 6 C -0.058 4.058 7 C -0.122 4.122 8 C -0.068 4.068 9 C 0.015 3.985 10 Cl -0.192 7.192 11 C -0.127 4.127 12 C -0.012 4.012 13 C 0.055 3.945 14 C -0.487 4.487 15 H 0.043 0.957 16 C 0.005 3.995 17 N -0.933 5.933 18 Si 0.955 3.045 19 H -0.278 1.278 20 H -0.281 1.281 21 H -0.262 1.262 22 H 0.049 0.951 23 H 0.143 0.857 24 H 0.052 0.948 25 H 0.159 0.841 26 H 0.171 0.829 27 H 0.139 0.861 28 H 0.114 0.886 29 H 0.126 0.874 30 H -0.002 1.002 31 H 0.019 0.981 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.036 -15.663 -0.882 18.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.279 6.279 3 C 0.324 3.676 4 O -0.379 6.379 5 C -0.144 4.144 6 C -0.076 4.076 7 C -0.140 4.140 8 C -0.069 4.069 9 C -0.047 4.047 10 Cl -0.165 7.165 11 C -0.145 4.145 12 C -0.012 4.012 13 C 0.018 3.982 14 C -0.526 4.526 15 H 0.061 0.939 16 C -0.192 4.192 17 N -0.574 5.574 18 Si 0.780 3.220 19 H -0.204 1.204 20 H -0.206 1.206 21 H -0.187 1.187 22 H 0.068 0.932 23 H 0.161 0.839 24 H 0.071 0.929 25 H 0.177 0.823 26 H 0.189 0.811 27 H 0.157 0.843 28 H 0.132 0.868 29 H 0.144 0.856 30 H 0.017 0.983 31 H 0.037 0.963 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.760 -15.212 -0.706 17.568 hybrid contribution -1.158 1.067 -0.449 1.637 sum 7.602 -14.145 -1.155 16.100 Atomic orbital electron populations 1.23450 0.75298 1.05522 1.01761 1.86472 1.24410 1.31969 1.85054 1.21706 0.90163 0.81574 0.74193 1.91067 1.67186 1.36055 1.43564 1.19143 0.88883 0.95294 1.11075 1.21612 0.94319 0.97094 0.94610 1.21282 0.93776 0.97916 1.01002 1.20187 0.95513 0.93214 0.97953 1.23398 0.89805 1.08076 0.83418 1.98738 1.89007 1.98973 1.29816 1.20962 0.91971 0.99292 1.02256 1.20533 0.94854 0.94607 0.91249 1.18251 0.93658 0.89032 0.97209 1.20913 1.30961 1.08207 0.92483 0.93862 1.25744 0.96376 0.96828 1.00239 1.70075 1.39412 1.17154 1.30754 0.85665 0.78751 0.77377 0.80217 1.20374 1.20621 1.18685 0.93171 0.83947 0.92922 0.82294 0.81129 0.84315 0.86768 0.85577 0.98348 0.96291 0.93117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 10.56 113.37 1.20 2.10 16 2 O -0.36 -12.22 9.83 -56.26 -0.55 -12.78 16 3 C 0.48 20.65 7.82 70.33 0.55 21.19 16 4 O -0.49 -26.13 12.01 19.92 0.24 -25.89 16 5 C -0.14 -5.65 5.86 -20.10 -0.12 -5.77 16 6 C -0.06 -1.66 9.62 22.53 0.22 -1.44 16 7 C -0.12 -2.80 9.68 22.23 0.22 -2.58 16 8 C -0.07 -1.76 5.26 -19.80 -0.10 -1.87 16 9 C 0.01 0.27 6.78 71.24 0.48 0.75 16 10 Cl -0.19 -4.20 29.13 -2.72 -0.08 -4.27 16 11 C -0.13 -4.50 9.30 22.23 0.21 -4.30 16 12 C -0.01 -0.53 5.11 -19.60 -0.10 -0.63 16 13 C 0.06 3.09 4.40 29.10 0.13 3.21 16 14 C -0.49 -29.05 7.50 25.60 0.19 -28.86 16 15 H 0.04 2.55 7.74 -2.91 -0.02 2.52 16 16 C 0.01 0.30 5.46 84.66 0.46 0.77 16 17 N -0.93 -59.49 13.29 21.45 0.28 -59.21 16 18 Si 0.95 46.92 29.54 68.60 2.03 48.95 16 19 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 20 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 21 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 22 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.14 2.43 8.14 -2.39 -0.02 2.41 16 24 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.16 3.58 7.63 -2.91 -0.02 3.56 16 26 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 27 H 0.14 1.52 8.08 -2.38 -0.02 1.50 16 28 H 0.11 1.86 8.08 -2.39 -0.02 1.85 16 29 H 0.13 4.43 8.03 -2.91 -0.02 4.41 16 30 H 0.00 -0.10 8.00 -2.39 -0.02 -0.12 16 31 H 0.02 1.20 6.17 -2.39 -0.01 1.18 16 32 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -76.39 296.98 6.37 -70.01 By element: Atomic # 1 Polarization: -0.51 SS G_CDS: 1.13 Total: 0.62 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: 3.33 Total: -17.43 kcal Atomic # 7 Polarization: -59.49 SS G_CDS: 0.28 Total: -59.21 kcal Atomic # 8 Polarization: -38.35 SS G_CDS: -0.31 Total: -38.67 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Atomic # 17 Polarization: -4.20 SS G_CDS: -0.08 Total: -4.27 kcal Total: -76.39 6.37 -70.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396075343.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.813 kcal (2) G-P(sol) polarization free energy of solvation -76.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds