Wall clock time and date at job start Mon Mar 30 2020 06:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34221 * 116.99904 * 2 1 4 4 O 1.20828 * 120.00204 * 0.02562 * 3 2 1 5 5 C 1.50707 * 120.00111 * 179.97438 * 3 2 1 6 6 C 1.50697 * 109.47218 * 180.02562 * 5 3 2 7 7 C 1.38382 * 120.00636 * 270.25430 * 6 5 3 8 8 Cl 1.73598 * 120.01193 * 359.97438 * 7 6 5 9 9 C 1.38328 * 119.97066 * 180.23550 * 7 6 5 10 10 C 1.38237 * 119.98774 * 359.76348 * 9 7 6 11 11 C 1.38223 * 120.01451 * 0.02562 * 10 9 7 12 12 C 1.38185 * 120.00743 * 90.00304 * 6 5 3 13 13 C 1.50700 * 119.99369 * 0.02562 * 12 6 5 14 14 C 1.50702 * 109.46869 * 84.72362 * 13 12 6 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 13 12 17 17 N 1.31514 * 119.99985 * 180.27663 * 16 14 13 18 18 Si 1.86800 * 119.99777 * 0.28166 * 16 14 13 19 19 H 1.48498 * 109.47109 * 89.99834 * 18 16 14 20 20 H 1.48507 * 109.46754 * 209.99574 * 18 16 14 21 21 H 1.48498 * 109.47278 * 329.99405 * 18 16 14 22 22 H 1.09000 * 109.46943 * 59.99997 * 1 2 3 23 23 H 1.08997 * 109.46993 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47276 * 299.99787 * 1 2 3 25 25 H 1.09001 * 109.46403 * 60.00214 * 5 3 2 26 26 H 1.08992 * 109.47006 * 300.00706 * 5 3 2 27 27 H 1.08004 * 120.00865 * 179.78985 * 9 7 6 28 28 H 1.07998 * 119.99253 * 179.97438 * 10 9 7 29 29 H 1.07998 * 119.98618 * 179.97438 * 11 10 9 30 30 H 1.09004 * 109.47210 * 324.72655 * 13 12 6 31 31 H 1.08994 * 109.47551 * 204.72308 * 13 12 6 32 32 H 0.96996 * 119.99730 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 0.0006 6 6 3.9936 2.7200 0.0011 7 6 4.1852 3.3854 -1.1970 8 17 3.9341 2.5556 -2.7010 9 6 4.5821 4.7105 -1.1957 10 6 4.7824 5.3706 0.0023 11 6 4.5867 4.7067 1.1987 12 6 4.1892 3.3824 1.1980 13 6 3.9757 2.6593 2.5028 14 6 5.2294 1.9092 2.8724 15 1 6.0945 1.9522 2.2271 16 6 5.2743 1.1732 4.0374 17 7 6.3703 0.5230 4.3627 18 14 3.7784 1.0994 5.1538 19 1 2.9202 -0.0455 4.7563 20 1 4.2191 0.9226 6.5609 21 1 3.0068 2.3623 5.0316 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 3.9564 0.7806 -0.8892 26 1 3.9557 0.7809 0.8907 27 1 4.7351 5.2295 -2.1304 28 1 5.0927 6.4051 0.0034 29 1 4.7437 5.2227 2.1343 30 1 3.1494 1.9563 2.3977 31 1 3.7409 3.3818 3.2844 32 1 6.4017 0.0049 5.1821 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396078526.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:40 Heat of formation + Delta-G solvation = -95.021790 kcal Electronic energy + Delta-G solvation = -18280.745045 eV Core-core repulsion = 15231.245225 eV Total energy + Delta-G solvation = -3049.499820 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.70837 -40.32443 -37.53337 -37.48898 -35.52219 -34.10620 -32.92521 -29.99417 -29.32413 -27.73775 -24.97436 -23.39719 -22.31543 -21.28292 -19.04762 -18.65504 -17.82196 -17.76678 -17.22929 -16.67627 -16.31394 -16.04779 -14.96430 -14.74972 -14.47703 -14.40027 -14.04908 -13.95437 -13.79591 -13.25198 -13.08024 -12.94667 -12.71570 -12.43717 -12.17061 -11.95726 -11.88285 -11.81589 -11.64940 -11.61655 -11.45923 -10.79833 -9.62616 -9.46578 -8.30480 -6.35051 0.22051 0.40716 1.12540 1.13928 1.33205 1.35898 1.45787 1.80131 2.32502 2.78747 3.03278 3.58568 3.85051 3.97829 4.09145 4.22126 4.28947 4.30897 4.44199 4.52139 4.65347 4.66215 4.75091 4.90853 5.08069 5.11129 5.28914 5.32057 5.46255 5.52817 5.79364 5.94549 6.25619 6.69030 6.71337 7.28481 8.85012 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.015330 B = 0.008461 C = 0.006332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.024281 B = 3308.504524 C = 4420.654311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.366 6.366 3 C 0.473 3.527 4 O -0.524 6.524 5 C -0.083 4.083 6 C -0.084 4.084 7 C -0.030 4.030 8 Cl -0.070 7.070 9 C -0.128 4.128 10 C -0.094 4.094 11 C -0.131 4.131 12 C -0.039 4.039 13 C 0.024 3.976 14 C -0.512 4.512 15 H 0.040 0.960 16 C 0.022 3.978 17 N -0.938 5.938 18 Si 0.930 3.070 19 H -0.266 1.266 20 H -0.280 1.280 21 H -0.252 1.252 22 H 0.067 0.933 23 H 0.135 0.865 24 H 0.057 0.943 25 H 0.127 0.873 26 H 0.119 0.881 27 H 0.159 0.841 28 H 0.166 0.834 29 H 0.134 0.866 30 H 0.017 0.983 31 H 0.032 0.968 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.819 4.068 -11.138 14.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C 0.317 3.683 4 O -0.413 6.413 5 C -0.120 4.120 6 C -0.085 4.085 7 C -0.056 4.056 8 Cl -0.041 7.041 9 C -0.146 4.146 10 C -0.112 4.112 11 C -0.149 4.149 12 C -0.039 4.039 13 C -0.013 4.013 14 C -0.550 4.550 15 H 0.058 0.942 16 C -0.177 4.177 17 N -0.578 5.578 18 Si 0.754 3.246 19 H -0.191 1.191 20 H -0.205 1.205 21 H -0.176 1.176 22 H 0.086 0.914 23 H 0.153 0.847 24 H 0.076 0.924 25 H 0.145 0.855 26 H 0.137 0.863 27 H 0.176 0.824 28 H 0.184 0.816 29 H 0.152 0.848 30 H 0.036 0.964 31 H 0.050 0.950 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.004 4.160 -11.144 14.919 hybrid contribution -0.452 -0.469 0.729 0.978 sum -9.456 3.691 -10.415 14.544 Atomic orbital electron populations 1.23583 0.74685 1.05836 1.02537 1.86506 1.25224 1.32619 1.83912 1.23650 0.91830 0.81413 0.71414 1.90616 1.67488 1.36973 1.46234 1.20378 0.88015 0.95855 1.07708 1.18961 1.03026 0.94542 0.91967 1.20886 1.04661 0.94350 0.85715 1.98316 1.95399 1.78840 1.31550 1.21228 1.01146 0.91864 1.00353 1.21427 0.97993 1.01238 0.90547 1.21373 0.99877 0.93776 0.99873 1.19991 0.95069 0.94459 0.94372 1.18639 0.96044 0.95231 0.91408 1.20976 0.98276 1.29025 1.06684 0.94153 1.25751 0.98509 0.94537 0.98898 1.70014 1.29214 1.32833 1.25734 0.85958 0.80271 0.79955 0.78464 1.19128 1.20524 1.17599 0.91417 0.84732 0.92421 0.85528 0.86288 0.82355 0.81613 0.84820 0.96449 0.95011 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.81 16 2 O -0.37 -11.68 10.57 -51.33 -0.54 -12.22 16 3 C 0.47 17.29 7.54 71.24 0.54 17.83 16 4 O -0.52 -21.01 15.78 21.96 0.35 -20.66 16 5 C -0.08 -3.07 4.87 29.10 0.14 -2.93 16 6 C -0.08 -3.24 4.38 -19.84 -0.09 -3.33 16 7 C -0.03 -0.98 6.31 22.33 0.14 -0.84 16 8 Cl -0.07 -2.01 27.30 -2.72 -0.07 -2.08 16 9 C -0.13 -3.59 9.83 22.29 0.22 -3.37 16 10 C -0.09 -2.63 10.05 22.27 0.22 -2.40 16 11 C -0.13 -4.61 9.68 22.27 0.22 -4.40 16 12 C -0.04 -1.60 5.07 -19.87 -0.10 -1.70 16 13 C 0.02 1.12 3.49 29.10 0.10 1.23 16 14 C -0.51 -28.14 8.85 25.60 0.23 -27.91 16 15 H 0.04 2.46 7.98 -2.91 -0.02 2.44 16 16 C 0.02 1.21 5.47 84.66 0.46 1.67 16 17 N -0.94 -56.45 13.96 21.45 0.30 -56.15 16 18 Si 0.93 42.91 27.47 68.60 1.88 44.79 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 21 H -0.25 -11.05 6.54 99.48 0.65 -10.40 16 22 H 0.07 1.46 8.13 -2.39 -0.02 1.44 16 23 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 24 H 0.06 1.38 8.13 -2.39 -0.02 1.36 16 25 H 0.13 4.12 6.92 -2.39 -0.02 4.10 16 26 H 0.12 4.98 6.14 -2.39 -0.01 4.96 16 27 H 0.16 3.37 8.06 -2.91 -0.02 3.35 16 28 H 0.17 3.22 8.06 -2.91 -0.02 3.20 16 29 H 0.13 4.38 8.06 -2.91 -0.02 4.35 16 30 H 0.02 0.82 6.09 -2.38 -0.01 0.81 16 31 H 0.03 1.47 7.10 -2.39 -0.02 1.45 16 32 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -66.58 293.05 6.27 -60.31 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: 1.08 Total: 10.37 kcal Atomic # 6 Polarization: -27.63 SS G_CDS: 3.28 Total: -24.35 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: 0.30 Total: -56.15 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -0.20 Total: -32.88 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.88 Total: 44.79 kcal Atomic # 17 Polarization: -2.01 SS G_CDS: -0.07 Total: -2.08 kcal Total: -66.58 6.27 -60.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396078526.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.713 kcal (2) G-P(sol) polarization free energy of solvation -66.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds