Wall clock time and date at job start Mon Mar 30 2020 06:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34708 * 116.99988 * 2 1 4 4 O 1.21467 * 120.00059 * 359.97438 * 3 2 1 5 5 C 1.47731 * 120.00075 * 180.02562 * 3 2 1 6 6 C 1.39655 * 120.14610 * 0.24274 * 5 3 2 7 7 C 1.37916 * 119.84597 * 180.25977 * 6 5 3 8 8 C 1.38391 * 120.15142 * 359.51461 * 7 6 5 9 9 C 1.50695 * 119.85151 * 180.25679 * 8 7 6 10 10 C 1.50693 * 109.47257 * 265.00412 * 9 8 7 11 11 H 1.07999 * 120.00366 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00266 * 180.02562 * 10 9 8 13 13 N 1.31519 * 120.00246 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 120.00037 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.47046 * 89.99963 * 14 12 10 16 16 H 1.48496 * 109.47274 * 210.00443 * 14 12 10 17 17 H 1.48500 * 109.46927 * 329.99991 * 14 12 10 18 18 C 1.38345 * 120.30295 * 0.23646 * 8 7 6 19 19 C 1.50699 * 119.93023 * 180.02562 * 18 8 7 20 20 Cl 1.80300 * 109.47112 * 89.99654 * 19 18 8 21 21 C 1.37971 * 120.14874 * 359.97438 * 18 8 7 22 22 H 1.09004 * 109.47177 * 300.00556 * 1 2 3 23 23 H 1.08998 * 109.47157 * 59.99795 * 1 2 3 24 24 H 1.08996 * 109.47063 * 180.02562 * 1 2 3 25 25 H 1.07998 * 120.07576 * 0.03338 * 6 5 3 26 26 H 1.08002 * 119.92771 * 179.79894 * 7 6 5 27 27 H 1.09005 * 109.46908 * 25.00348 * 9 8 7 28 28 H 1.09001 * 109.47095 * 144.99833 * 9 8 7 29 29 H 0.97000 * 119.99939 * 180.02562 * 13 12 10 30 30 H 1.08994 * 109.47597 * 209.99824 * 19 18 8 31 31 H 1.09004 * 109.46958 * 330.00723 * 19 18 8 32 32 H 1.08003 * 120.07473 * 180.02562 * 21 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5389 1.2776 -0.0006 6 6 4.3025 0.1083 -0.0062 7 6 5.6794 0.1877 -0.0013 8 6 6.3045 1.4224 -0.0009 9 6 7.8093 1.5012 -0.0014 10 6 8.3050 1.6504 1.4139 11 1 7.6007 1.6851 2.2319 12 6 9.6576 1.7437 1.6644 13 7 10.0902 1.8733 2.8996 14 14 10.8759 1.6844 0.2496 15 1 11.1252 3.0615 -0.2470 16 1 12.1523 1.0891 0.7200 17 1 10.3185 0.8553 -0.8492 18 6 5.5541 2.5847 -0.0005 19 6 6.2435 3.9247 -0.0007 20 17 6.5179 4.4592 -1.7007 21 6 4.1759 2.5198 -0.0011 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 3.8159 -0.8559 -0.0107 26 1 6.2712 -0.7157 -0.0024 27 1 8.2208 0.5903 -0.4364 28 1 8.1279 2.3612 -0.5906 29 1 11.0418 1.9393 3.0758 30 1 5.6186 4.6549 0.5134 31 1 7.2014 3.8406 0.5126 32 1 3.5913 3.4279 -0.0012 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396078546.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:57 Heat of formation + Delta-G solvation = -84.836818 kcal Electronic energy + Delta-G solvation = -17647.063429 eV Core-core repulsion = 14598.005263 eV Total energy + Delta-G solvation = -3049.058167 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.46603 -38.96428 -36.38648 -35.56337 -33.81784 -32.24927 -31.54021 -28.77560 -27.57024 -26.23371 -24.02490 -21.67004 -21.61363 -19.94642 -17.53619 -17.02365 -16.94786 -16.32535 -15.30911 -15.14605 -14.45487 -14.26928 -13.92343 -13.37740 -13.33262 -13.17672 -12.88502 -12.57916 -12.21701 -12.12612 -11.89161 -11.49663 -11.09366 -10.85472 -10.65200 -10.58228 -10.32413 -10.12273 -10.01806 -9.89989 -9.54302 -8.71647 -8.61305 -8.23599 -6.21631 -4.23781 0.99485 1.47518 2.61380 2.71468 2.96680 3.21948 3.30368 3.32752 4.14836 4.30240 4.81293 4.88421 4.99191 5.06499 5.07371 5.15603 5.32945 5.37384 5.45741 5.58302 5.76941 6.05564 6.10104 6.26640 6.32389 6.46839 6.62766 6.72164 6.84543 7.16534 7.25674 7.50395 7.80073 8.30706 8.81309 9.37374 10.90245 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.022823 B = 0.005456 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.547561 B = 5130.603349 C = 5883.574763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.515 3.485 4 O -0.516 6.516 5 C -0.161 4.161 6 C -0.051 4.051 7 C -0.139 4.139 8 C 0.033 3.967 9 C 0.002 3.998 10 C -0.521 4.521 11 H 0.076 0.924 12 C 0.077 3.923 13 N -0.892 5.892 14 Si 0.872 3.128 15 H -0.272 1.272 16 H -0.285 1.285 17 H -0.263 1.263 18 C -0.123 4.123 19 C 0.013 3.987 20 Cl -0.195 7.195 21 C -0.031 4.031 22 H 0.062 0.938 23 H 0.061 0.939 24 H 0.100 0.900 25 H 0.132 0.868 26 H 0.133 0.867 27 H 0.034 0.966 28 H 0.036 0.964 29 H 0.267 0.733 30 H 0.095 0.905 31 H 0.130 0.870 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.839 -2.158 -6.641 14.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.362 3.638 4 O -0.406 6.406 5 C -0.162 4.162 6 C -0.070 4.070 7 C -0.157 4.157 8 C 0.033 3.967 9 C -0.035 4.035 10 C -0.559 4.559 11 H 0.094 0.906 12 C -0.127 4.127 13 N -0.530 5.530 14 Si 0.699 3.301 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.188 1.188 18 C -0.123 4.123 19 C -0.049 4.049 20 Cl -0.169 7.169 21 C -0.050 4.050 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.118 0.882 25 H 0.150 0.850 26 H 0.151 0.849 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.113 0.887 31 H 0.148 0.852 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.880 -1.807 -6.646 14.606 hybrid contribution 0.467 -0.001 -0.589 0.752 sum -12.413 -1.808 -7.235 14.481 Atomic orbital electron populations 1.23234 0.76446 1.03502 1.02484 1.86556 1.23189 1.33013 1.84568 1.21306 0.89261 0.81136 0.72145 1.90798 1.66931 1.36051 1.46787 1.18788 0.88232 0.95030 1.14156 1.21402 0.93962 0.97372 0.94244 1.21097 0.93678 0.98160 1.02807 1.20542 0.98258 0.91507 0.86407 1.19038 0.86664 0.98564 0.99204 1.20783 0.92808 1.52030 0.90270 0.90575 1.24947 0.98177 0.94057 0.95471 1.69883 1.15068 1.49047 1.18985 0.86881 0.80969 0.79200 0.83071 1.19775 1.21113 1.18771 1.19466 0.92451 0.94774 1.05615 1.23331 1.05124 0.93769 0.82627 1.98695 1.97514 1.91594 1.29083 1.21008 0.93636 0.96539 0.93817 0.91952 0.91996 0.88164 0.84969 0.84935 0.94751 0.94553 0.92337 0.88688 0.85212 0.85002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.66 9.82 -40.51 -0.40 -5.05 16 3 C 0.52 7.95 7.90 34.61 0.27 8.23 16 4 O -0.52 -8.90 16.14 -19.24 -0.31 -9.21 16 5 C -0.16 -2.56 5.87 -104.98 -0.62 -3.18 16 6 C -0.05 -0.77 9.62 -39.17 -0.38 -1.15 16 7 C -0.14 -2.34 9.66 -39.64 -0.38 -2.73 16 8 C 0.03 0.63 5.08 -104.53 -0.53 0.10 16 9 C 0.00 0.05 3.48 -29.04 -0.10 -0.05 16 10 C -0.52 -13.41 8.86 -34.44 -0.31 -13.72 16 11 H 0.08 2.15 7.98 -52.49 -0.42 1.73 16 12 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 13 N -0.89 -25.71 13.96 55.43 0.77 -24.94 16 14 Si 0.87 20.17 27.47 -169.99 -4.67 15.50 16 15 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 16 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 17 H -0.26 -5.83 6.54 56.52 0.37 -5.46 16 18 C -0.12 -2.16 5.25 -104.68 -0.55 -2.71 16 19 C 0.01 0.22 6.01 36.01 0.22 0.44 16 20 Cl -0.20 -3.22 28.88 -51.86 -1.50 -4.72 16 21 C -0.03 -0.52 9.24 -39.17 -0.36 -0.88 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.13 1.65 7.61 -52.49 -0.40 1.25 16 26 H 0.13 2.05 8.06 -52.49 -0.42 1.63 16 27 H 0.03 0.74 7.11 -51.93 -0.37 0.37 16 28 H 0.04 0.78 6.17 -51.93 -0.32 0.46 16 29 H 0.27 7.22 8.31 -40.82 -0.34 6.89 16 30 H 0.09 1.34 8.08 -51.93 -0.42 0.92 16 31 H 0.13 2.44 6.13 -51.93 -0.32 2.12 16 32 H 0.13 2.02 7.65 -52.48 -0.40 1.62 16 LS Contribution 295.54 15.07 4.45 4.45 Total: -1.00 -29.34 295.54 -6.92 -36.25 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -3.50 Total: -0.03 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: -1.77 Total: -12.27 kcal Atomic # 7 Polarization: -25.71 SS G_CDS: 0.77 Total: -24.94 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.71 Total: -14.26 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.67 Total: 15.50 kcal Atomic # 17 Polarization: -3.22 SS G_CDS: -1.50 Total: -4.72 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.34 -6.92 -36.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396078546.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.582 kcal (2) G-P(sol) polarization free energy of solvation -29.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds