Wall clock time and date at job start Mon Mar 30 2020 06:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34708 * 116.99988 * 2 1 4 4 O 1.21467 * 120.00059 * 359.97438 * 3 2 1 5 5 C 1.47731 * 120.00075 * 180.02562 * 3 2 1 6 6 C 1.39655 * 120.14610 * 0.24274 * 5 3 2 7 7 C 1.37916 * 119.84597 * 180.25977 * 6 5 3 8 8 C 1.38391 * 120.15142 * 359.51461 * 7 6 5 9 9 C 1.50695 * 119.85151 * 180.25679 * 8 7 6 10 10 C 1.50693 * 109.47257 * 265.00412 * 9 8 7 11 11 H 1.07999 * 120.00366 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00266 * 180.02562 * 10 9 8 13 13 N 1.31519 * 120.00246 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 120.00037 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.47046 * 89.99963 * 14 12 10 16 16 H 1.48496 * 109.47274 * 210.00443 * 14 12 10 17 17 H 1.48500 * 109.46927 * 329.99991 * 14 12 10 18 18 C 1.38345 * 120.30295 * 0.23646 * 8 7 6 19 19 C 1.50699 * 119.93023 * 180.02562 * 18 8 7 20 20 Cl 1.80300 * 109.47112 * 89.99654 * 19 18 8 21 21 C 1.37971 * 120.14874 * 359.97438 * 18 8 7 22 22 H 1.09004 * 109.47177 * 300.00556 * 1 2 3 23 23 H 1.08998 * 109.47157 * 59.99795 * 1 2 3 24 24 H 1.08996 * 109.47063 * 180.02562 * 1 2 3 25 25 H 1.07998 * 120.07576 * 0.03338 * 6 5 3 26 26 H 1.08002 * 119.92771 * 179.79894 * 7 6 5 27 27 H 1.09005 * 109.46908 * 25.00348 * 9 8 7 28 28 H 1.09001 * 109.47095 * 144.99833 * 9 8 7 29 29 H 0.97000 * 119.99939 * 180.02562 * 13 12 10 30 30 H 1.08994 * 109.47597 * 209.99824 * 19 18 8 31 31 H 1.09004 * 109.46958 * 330.00723 * 19 18 8 32 32 H 1.08003 * 120.07473 * 180.02562 * 21 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5389 1.2776 -0.0006 6 6 4.3025 0.1083 -0.0062 7 6 5.6794 0.1877 -0.0013 8 6 6.3045 1.4224 -0.0009 9 6 7.8093 1.5012 -0.0014 10 6 8.3050 1.6504 1.4139 11 1 7.6007 1.6851 2.2319 12 6 9.6576 1.7437 1.6644 13 7 10.0902 1.8733 2.8996 14 14 10.8759 1.6844 0.2496 15 1 11.1252 3.0615 -0.2470 16 1 12.1523 1.0891 0.7200 17 1 10.3185 0.8553 -0.8492 18 6 5.5541 2.5847 -0.0005 19 6 6.2435 3.9247 -0.0007 20 17 6.5179 4.4592 -1.7007 21 6 4.1759 2.5198 -0.0011 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 3.8159 -0.8559 -0.0107 26 1 6.2712 -0.7157 -0.0024 27 1 8.2208 0.5903 -0.4364 28 1 8.1279 2.3612 -0.5906 29 1 11.0418 1.9393 3.0758 30 1 5.6186 4.6549 0.5134 31 1 7.2014 3.8406 0.5126 32 1 3.5913 3.4279 -0.0012 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396078546.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:55 Heat of formation + Delta-G solvation = -100.156602 kcal Electronic energy + Delta-G solvation = -17647.727745 eV Core-core repulsion = 14598.005263 eV Total energy + Delta-G solvation = -3049.722482 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.64158 -40.24921 -37.51195 -36.88510 -35.53972 -33.86223 -32.99987 -30.24718 -28.63635 -27.53976 -25.55140 -23.18649 -22.89720 -21.24232 -18.97150 -18.71821 -18.15898 -17.37714 -16.72737 -16.63509 -15.99357 -15.54779 -15.32454 -14.74102 -14.46111 -14.39595 -14.26728 -14.20357 -13.67516 -13.53937 -13.07448 -12.99227 -12.52885 -12.24176 -12.11659 -11.87725 -11.81319 -11.66930 -11.56282 -11.32372 -11.24752 -10.76277 -9.89530 -9.65638 -8.28234 -6.33412 -0.30264 0.18392 1.33034 1.39530 1.42014 1.51086 1.65898 1.69753 2.36400 2.83266 3.06973 3.58109 3.69972 3.83673 4.06475 4.14011 4.25570 4.34018 4.35515 4.47849 4.68746 4.71305 4.79559 4.90971 5.09534 5.11650 5.20111 5.23756 5.39599 5.54213 5.75575 5.85394 6.25213 6.65496 6.73296 7.30678 8.87214 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.022823 B = 0.005456 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.547561 B = 5130.603349 C = 5883.574763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.356 6.356 3 C 0.519 3.481 4 O -0.538 6.538 5 C -0.163 4.163 6 C -0.039 4.039 7 C -0.143 4.143 8 C 0.003 3.997 9 C 0.010 3.990 10 C -0.512 4.512 11 H 0.037 0.963 12 C 0.021 3.979 13 N -0.942 5.942 14 Si 0.932 3.068 15 H -0.267 1.267 16 H -0.286 1.286 17 H -0.244 1.244 18 C -0.127 4.127 19 C 0.016 3.984 20 Cl -0.192 7.192 21 C -0.035 4.035 22 H 0.062 0.938 23 H 0.064 0.936 24 H 0.136 0.864 25 H 0.163 0.837 26 H 0.144 0.856 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.267 0.733 30 H 0.118 0.882 31 H 0.104 0.896 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.171 -3.127 -8.202 16.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.272 6.272 3 C 0.366 3.634 4 O -0.429 6.429 5 C -0.164 4.164 6 C -0.057 4.057 7 C -0.161 4.161 8 C 0.003 3.997 9 C -0.027 4.027 10 C -0.550 4.550 11 H 0.056 0.944 12 C -0.177 4.177 13 N -0.582 5.582 14 Si 0.756 3.244 15 H -0.192 1.192 16 H -0.212 1.212 17 H -0.167 1.167 18 C -0.128 4.128 19 C -0.046 4.046 20 Cl -0.166 7.166 21 C -0.053 4.053 22 H 0.081 0.919 23 H 0.083 0.917 24 H 0.154 0.846 25 H 0.180 0.820 26 H 0.162 0.838 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.136 0.864 31 H 0.123 0.877 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -14.235 -2.794 -8.226 16.676 hybrid contribution 0.694 0.263 -0.063 0.744 sum -13.541 -2.531 -8.289 16.077 Atomic orbital electron populations 1.23612 0.74158 1.05987 1.02665 1.86535 1.25351 1.31431 1.83846 1.21173 0.88965 0.81560 0.71677 1.90791 1.67323 1.36956 1.47876 1.19012 0.89028 0.95169 1.13174 1.21639 0.93103 0.98420 0.92509 1.21274 0.94681 0.97758 1.02398 1.20445 0.96879 0.93111 0.89297 1.18844 0.88880 0.98590 0.96370 1.20947 0.92105 1.50412 0.91556 0.94443 1.25763 1.00231 0.94000 0.97736 1.70026 1.15476 1.51389 1.21353 0.85915 0.78432 0.79659 0.80389 1.19208 1.21191 1.16747 1.19519 0.92989 0.94599 1.05663 1.23260 1.04174 0.94418 0.82770 1.98691 1.97534 1.91508 1.28820 1.21097 0.93129 0.97399 0.93690 0.91928 0.91736 0.84575 0.81955 0.83778 0.94358 0.94344 0.92364 0.86375 0.87733 0.84126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.64 16 2 O -0.36 -8.23 9.82 -56.17 -0.55 -8.79 16 3 C 0.52 14.90 7.90 70.33 0.56 15.45 16 4 O -0.54 -17.64 16.14 19.94 0.32 -17.31 16 5 C -0.16 -4.86 5.87 -20.10 -0.12 -4.98 16 6 C -0.04 -1.07 9.62 22.54 0.22 -0.85 16 7 C -0.14 -4.59 9.66 22.23 0.21 -4.37 16 8 C 0.00 0.12 5.08 -19.80 -0.10 0.02 16 9 C 0.01 0.44 3.48 29.10 0.10 0.54 16 10 C -0.51 -26.90 8.86 25.60 0.23 -26.67 16 11 H 0.04 2.20 7.98 -2.91 -0.02 2.18 16 12 C 0.02 1.14 5.47 84.65 0.46 1.60 16 13 N -0.94 -55.85 13.96 21.45 0.30 -55.55 16 14 Si 0.93 41.43 27.47 68.60 1.88 43.32 16 15 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 16 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 17 H -0.24 -10.00 6.54 99.48 0.65 -9.35 16 18 C -0.13 -4.39 5.25 -19.90 -0.10 -4.49 16 19 C 0.02 0.52 6.01 71.24 0.43 0.95 16 20 Cl -0.19 -6.14 28.88 -2.72 -0.08 -6.21 16 21 C -0.03 -1.09 9.24 22.54 0.21 -0.89 16 22 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.16 3.46 7.61 -2.91 -0.02 3.44 16 26 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 27 H 0.04 1.60 7.11 -2.38 -0.02 1.59 16 28 H 0.04 1.63 6.17 -2.39 -0.01 1.61 16 29 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 30 H 0.12 3.26 8.08 -2.39 -0.02 3.24 16 31 H 0.10 4.00 6.13 -2.38 -0.01 3.98 16 32 H 0.14 4.13 7.65 -2.91 -0.02 4.11 16 Total: -1.00 -63.50 295.54 6.24 -57.26 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: 1.08 Total: 9.32 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: 3.29 Total: -22.04 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: 0.30 Total: -55.55 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.23 Total: -26.10 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 1.88 Total: 43.32 kcal Atomic # 17 Polarization: -6.14 SS G_CDS: -0.08 Total: -6.21 kcal Total: -63.50 6.24 -57.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396078546.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.898 kcal (2) G-P(sol) polarization free energy of solvation -63.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds