Wall clock time and date at job start Mon Mar 30 2020 06:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 116.99848 * 2 1 4 4 O 1.20825 * 120.00040 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99632 * 179.97438 * 3 2 1 6 6 C 1.50701 * 109.46924 * 180.02562 * 5 3 2 7 7 C 1.38268 * 119.98889 * 265.00519 * 6 5 3 8 8 C 1.38192 * 120.01363 * 180.30113 * 7 6 5 9 9 C 1.38379 * 119.98375 * 359.44094 * 8 7 6 10 10 Cl 1.73598 * 120.00887 * 180.29775 * 9 8 7 11 11 C 1.38327 * 119.97618 * 0.55843 * 9 8 7 12 12 C 1.38224 * 119.98839 * 85.02383 * 6 5 3 13 13 C 1.50706 * 119.99015 * 359.97438 * 12 6 5 14 14 C 1.50704 * 109.46641 * 85.00168 * 13 12 6 15 15 H 1.07993 * 120.00482 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99531 * 180.02562 * 14 13 12 17 17 N 1.31521 * 120.00005 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00034 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47516 * 59.99650 * 18 16 14 20 20 H 1.48504 * 109.47265 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47101 * 299.99705 * 18 16 14 22 22 H 1.08997 * 109.47350 * 59.99725 * 1 2 3 23 23 H 1.09000 * 109.47396 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47395 * 299.99965 * 1 2 3 25 25 H 1.09002 * 109.47148 * 60.00559 * 5 3 2 26 26 H 1.08991 * 109.47589 * 300.00248 * 5 3 2 27 27 H 1.08002 * 119.98896 * 0.02562 * 7 6 5 28 28 H 1.08004 * 120.00417 * 179.72827 * 8 7 6 29 29 H 1.08001 * 120.00718 * 179.74565 * 11 9 8 30 30 H 1.08992 * 109.47067 * 205.00192 * 13 12 6 31 31 H 1.08995 * 109.46979 * 325.00255 * 13 12 6 32 32 H 0.97000 * 119.99513 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 3.9936 2.7200 0.0011 7 6 4.2900 3.3535 -1.1917 8 6 4.6878 4.6769 -1.1912 9 6 4.7784 5.3714 0.0022 10 17 5.2707 7.0361 0.0027 11 6 4.4818 4.7372 1.1952 12 6 4.0894 3.4117 1.1940 13 6 3.7661 2.7205 2.4936 14 6 4.9851 1.9855 2.9885 15 1 5.9021 2.0155 2.4188 16 6 4.9293 1.2740 4.1681 17 7 3.8125 1.2371 4.8616 18 14 6.4405 0.3635 4.7819 19 1 7.5470 1.3300 4.9979 20 1 6.1214 -0.3187 6.0619 21 1 6.8541 -0.6453 3.7738 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 3.9564 0.7806 -0.8892 26 1 3.9557 0.7809 0.8907 27 1 4.2148 2.8125 -2.1234 28 1 4.9236 5.1703 -2.1226 29 1 4.5563 5.2776 2.1273 30 1 3.4632 3.4613 3.2335 31 1 2.9535 2.0115 2.3356 32 1 3.7734 0.7368 5.6917 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396078606.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:04 Heat of formation + Delta-G solvation = -100.496317 kcal Electronic energy + Delta-G solvation = -18005.845839 eV Core-core repulsion = 14956.108625 eV Total energy + Delta-G solvation = -3049.737213 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.63154 -40.26896 -37.65802 -37.29100 -35.49341 -33.79955 -32.95817 -29.85733 -28.97353 -27.60073 -25.33117 -23.38599 -22.40553 -21.22716 -18.72526 -18.41386 -17.79575 -17.64409 -17.22677 -16.56650 -16.47893 -15.88354 -14.79162 -14.49399 -14.47415 -14.31970 -14.17960 -13.95447 -13.52382 -13.13308 -12.94535 -12.87135 -12.62728 -12.37172 -12.28022 -12.12143 -11.99890 -11.76531 -11.57322 -11.47160 -11.33057 -10.59770 -9.70690 -9.39291 -8.19718 -6.33601 0.19165 0.48908 1.17670 1.24131 1.43246 1.45124 1.53079 1.87235 2.40528 2.82735 3.12003 3.70971 3.91037 4.04716 4.08752 4.28944 4.32651 4.34778 4.42529 4.63290 4.69507 4.74425 4.86186 5.06592 5.19192 5.30861 5.33709 5.41389 5.44738 5.73442 5.87871 5.96311 6.14938 6.77642 6.79969 7.35777 8.89712 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.011290 B = 0.008394 C = 0.005326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.541303 B = 3334.946905 C = 5256.132081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.365 6.365 3 C 0.469 3.531 4 O -0.535 6.535 5 C -0.074 4.074 6 C -0.087 4.087 7 C -0.086 4.086 8 C -0.127 4.127 9 C -0.032 4.032 10 Cl -0.073 7.073 11 C -0.134 4.134 12 C -0.037 4.037 13 C 0.063 3.937 14 C -0.524 4.524 15 H 0.063 0.937 16 C 0.009 3.991 17 N -0.929 5.929 18 Si 0.962 3.038 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.259 1.259 22 H 0.069 0.931 23 H 0.134 0.866 24 H 0.047 0.953 25 H 0.151 0.849 26 H 0.114 0.886 27 H 0.166 0.834 28 H 0.161 0.839 29 H 0.116 0.884 30 H -0.007 1.007 31 H 0.007 0.993 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.435 0.092 -13.751 13.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.282 6.282 3 C 0.314 3.686 4 O -0.424 6.424 5 C -0.111 4.111 6 C -0.087 4.087 7 C -0.104 4.104 8 C -0.145 4.145 9 C -0.058 4.058 10 Cl -0.044 7.044 11 C -0.153 4.153 12 C -0.037 4.037 13 C 0.026 3.974 14 C -0.561 4.561 15 H 0.081 0.919 16 C -0.189 4.189 17 N -0.568 5.568 18 Si 0.786 3.214 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.184 1.184 22 H 0.088 0.912 23 H 0.152 0.848 24 H 0.066 0.934 25 H 0.169 0.831 26 H 0.132 0.868 27 H 0.184 0.816 28 H 0.178 0.822 29 H 0.134 0.866 30 H 0.011 0.989 31 H 0.025 0.975 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.710 0.458 -13.592 13.619 hybrid contribution 0.161 0.013 1.205 1.216 sum -0.548 0.471 -12.387 12.408 Atomic orbital electron populations 1.23514 0.75110 1.05636 1.02179 1.86492 1.24880 1.32872 1.83963 1.23973 0.92485 0.81128 0.71044 1.90634 1.67882 1.37335 1.46599 1.20405 0.86854 0.95520 1.08289 1.19382 1.01358 0.94843 0.93130 1.21266 0.97286 0.94195 0.97661 1.21173 1.01882 0.94533 0.96908 1.20984 1.03580 0.85995 0.95262 1.98325 1.90011 1.17077 1.98965 1.20897 1.02396 0.94778 0.97254 1.20216 0.94200 0.92984 0.96301 1.18055 0.96320 0.94038 0.88987 1.21242 0.97247 1.30638 1.07003 0.91928 1.25893 0.99047 0.97315 0.96690 1.70093 1.28200 1.42616 1.15890 0.85545 0.79161 0.78890 0.77800 1.19677 1.21063 1.18364 0.91181 0.84773 0.93425 0.83110 0.86767 0.81649 0.82159 0.86605 0.98907 0.97473 0.92614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 10.56 113.37 1.20 1.90 16 2 O -0.37 -11.65 10.57 -51.40 -0.54 -12.19 16 3 C 0.47 16.97 7.15 71.24 0.51 17.48 16 4 O -0.54 -22.38 15.78 21.97 0.35 -22.03 16 5 C -0.07 -2.46 5.27 29.10 0.15 -2.31 16 6 C -0.09 -3.16 4.37 -19.86 -0.09 -3.25 16 7 C -0.09 -2.47 9.68 22.27 0.22 -2.25 16 8 C -0.13 -3.57 9.83 22.29 0.22 -3.35 16 9 C -0.03 -1.06 6.32 22.32 0.14 -0.92 16 10 Cl -0.07 -2.10 28.96 -2.72 -0.08 -2.18 16 11 C -0.13 -5.45 9.47 22.29 0.21 -5.24 16 12 C -0.04 -1.61 5.07 -19.87 -0.10 -1.71 16 13 C 0.06 3.32 4.44 29.11 0.13 3.45 16 14 C -0.52 -28.41 8.30 25.60 0.21 -28.20 16 15 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 16 C 0.01 0.51 5.46 84.65 0.46 0.98 16 17 N -0.93 -54.83 13.29 21.45 0.28 -54.54 16 18 Si 0.96 42.64 29.54 68.60 2.03 44.67 16 19 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 20 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 21 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 22 H 0.07 1.55 8.13 -2.39 -0.02 1.53 16 23 H 0.13 2.23 8.14 -2.39 -0.02 2.22 16 24 H 0.05 1.31 8.13 -2.39 -0.02 1.29 16 25 H 0.15 3.47 8.05 -2.39 -0.02 3.45 16 26 H 0.11 4.44 6.41 -2.39 -0.02 4.43 16 27 H 0.17 3.29 8.06 -2.91 -0.02 3.27 16 28 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 29 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 30 H -0.01 -0.43 8.05 -2.39 -0.02 -0.45 16 31 H 0.01 0.40 6.41 -2.39 -0.02 0.38 16 32 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -67.56 298.92 6.43 -61.13 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: 1.13 Total: 8.58 kcal Atomic # 6 Polarization: -26.69 SS G_CDS: 3.26 Total: -23.42 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: 0.28 Total: -54.54 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -0.20 Total: -34.22 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Atomic # 17 Polarization: -2.10 SS G_CDS: -0.08 Total: -2.18 kcal Total: -67.56 6.43 -61.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396078606.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.368 kcal (2) G-P(sol) polarization free energy of solvation -67.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds