Wall clock time and date at job start Mon Mar 30 2020 06:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34704 * 117.00275 * 2 1 4 4 O 1.21471 * 120.00073 * 359.97438 * 3 2 1 5 5 C 1.47723 * 120.00273 * 180.02562 * 3 2 1 6 6 C 1.39652 * 120.14834 * 5.66336 * 5 3 2 7 7 C 1.37918 * 119.85014 * 179.97438 * 6 5 3 8 8 C 1.50698 * 119.92994 * 179.97438 * 7 6 5 9 9 Cl 1.80305 * 109.46807 * 90.00044 * 8 7 6 10 10 C 1.38401 * 120.14607 * 359.74502 * 7 6 5 11 11 C 1.38336 * 120.30183 * 0.51533 * 10 7 6 12 12 C 1.37967 * 120.15544 * 359.48396 * 11 10 7 13 13 C 1.50694 * 120.07703 * 180.28032 * 12 11 10 14 14 C 1.50704 * 109.47199 * 100.82673 * 13 12 11 15 15 H 1.07993 * 119.99903 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99878 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00156 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99861 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47360 * 60.00065 * 18 16 14 20 20 H 1.48497 * 109.47244 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46840 * 300.00157 * 18 16 14 22 22 H 1.09004 * 109.47201 * 300.00421 * 1 2 3 23 23 H 1.09000 * 109.46965 * 59.99766 * 1 2 3 24 24 H 1.08996 * 109.47295 * 180.02562 * 1 2 3 25 25 H 1.08004 * 120.07261 * 359.95681 * 6 5 3 26 26 H 1.08998 * 109.47507 * 210.00242 * 8 7 6 27 27 H 1.09001 * 109.46727 * 330.00754 * 8 7 6 28 28 H 1.08006 * 119.84419 * 180.25205 * 10 7 6 29 29 H 1.08001 * 119.92439 * 179.76336 * 11 10 7 30 30 H 1.09006 * 109.47194 * 220.82441 * 13 12 11 31 31 H 1.08997 * 109.47413 * 340.82356 * 13 12 11 32 32 H 0.97005 * 119.99877 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5388 1.2775 -0.0006 6 6 4.3021 0.1142 -0.1203 7 6 5.6790 0.1935 -0.1206 8 6 6.5044 -1.0607 -0.2491 9 17 6.8235 -1.3942 -1.9921 10 6 6.3044 1.4230 -0.0080 11 6 5.5544 2.5788 0.1163 12 6 4.1763 2.5139 0.1181 13 6 3.3610 3.7747 0.2472 14 6 2.8565 4.1881 -1.1114 15 1 3.1014 3.5967 -1.9812 16 6 2.0814 5.3207 -1.2436 17 7 1.7828 6.0405 -0.1842 18 14 1.4555 5.8327 -2.9275 19 1 0.6087 4.7508 -3.4909 20 1 0.6522 7.0751 -2.8003 21 1 2.6086 6.0796 -3.8301 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 3.8152 -0.8455 -0.2121 26 1 7.4510 -0.9281 0.2747 27 1 5.9617 -1.8991 0.1877 28 1 7.3829 1.4799 -0.0129 29 1 6.0488 3.5347 0.2076 30 1 2.5143 3.5936 0.9095 31 1 3.9827 4.5686 0.6610 32 1 1.2378 6.8375 -0.2774 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396079900.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:24 Heat of formation + Delta-G solvation = -74.990936 kcal Electronic energy + Delta-G solvation = -18041.561357 eV Core-core repulsion = 14992.930139 eV Total energy + Delta-G solvation = -3048.631217 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.04208 -38.54798 -36.08042 -35.66280 -33.58539 -32.01957 -31.08455 -28.72276 -27.28900 -25.51774 -23.70431 -22.54684 -21.10850 -19.67063 -17.16782 -16.39727 -16.11771 -15.69255 -15.27978 -15.09641 -14.44428 -14.36125 -14.10422 -13.31406 -13.03343 -12.92429 -12.79871 -12.21074 -11.81659 -11.67275 -11.35972 -11.33773 -11.07201 -10.69732 -10.66529 -10.38513 -10.36175 -10.21501 -9.69475 -9.43378 -9.12805 -8.60281 -8.26672 -8.03879 -5.92611 -3.91195 1.23542 1.50939 2.56767 3.23618 3.27118 3.38242 3.41182 3.45058 4.27014 4.55538 4.66385 4.78698 5.17076 5.28245 5.35301 5.43062 5.46488 5.52904 5.57225 5.77017 5.82521 5.92532 6.20947 6.31535 6.65217 6.76877 6.85444 6.98754 7.28507 7.58657 7.82272 7.99632 8.38417 8.55743 9.06693 9.67954 11.19071 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.017451 B = 0.006300 C = 0.005432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.090682 B = 4443.057527 C = 5153.256908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.372 6.372 3 C 0.480 3.520 4 O -0.435 6.435 5 C -0.128 4.128 6 C -0.045 4.045 7 C -0.157 4.157 8 C 0.022 3.978 9 Cl -0.189 7.189 10 C -0.067 4.067 11 C -0.139 4.139 12 C 0.036 3.964 13 C 0.041 3.959 14 C -0.484 4.484 15 H 0.049 0.951 16 C 0.063 3.937 17 N -0.894 5.894 18 Si 0.891 3.109 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.278 1.278 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.092 0.908 25 H 0.130 0.870 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.121 0.879 29 H 0.131 0.869 30 H 0.058 0.942 31 H 0.025 0.975 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.267 -14.471 2.261 15.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.291 6.291 3 C 0.322 3.678 4 O -0.318 6.318 5 C -0.129 4.129 6 C -0.063 4.063 7 C -0.157 4.157 8 C -0.040 4.040 9 Cl -0.163 7.163 10 C -0.085 4.085 11 C -0.157 4.157 12 C 0.035 3.965 13 C 0.004 3.996 14 C -0.522 4.522 15 H 0.068 0.932 16 C -0.137 4.137 17 N -0.533 5.533 18 Si 0.719 3.281 19 H -0.204 1.204 20 H -0.213 1.213 21 H -0.203 1.203 22 H 0.078 0.922 23 H 0.079 0.921 24 H 0.111 0.889 25 H 0.148 0.852 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.139 0.861 29 H 0.149 0.851 30 H 0.076 0.924 31 H 0.043 0.957 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.946 -14.012 2.186 15.377 hybrid contribution -0.612 0.340 -1.078 1.285 sum 5.334 -13.672 1.107 14.717 Atomic orbital electron populations 1.23100 0.77169 1.02577 1.02539 1.86487 1.22630 1.34107 1.85900 1.21229 0.89329 0.81436 0.75801 1.91087 1.65912 1.34104 1.40727 1.18919 0.89207 0.94165 1.10659 1.21175 0.92712 0.97875 0.94588 1.19392 0.93549 0.94146 1.08662 1.23061 1.01397 0.97286 0.82299 1.98732 1.96619 1.96179 1.24739 1.21164 0.99575 0.91842 0.95959 1.21081 0.93215 0.98353 1.03039 1.21009 0.94021 0.95797 0.85642 1.18686 0.94756 0.87087 0.99041 1.20647 1.31499 1.08491 0.91547 0.93235 1.24847 0.95936 0.96567 0.96387 1.69930 1.38348 1.16581 1.28491 0.86675 0.78959 0.77769 0.84682 1.20419 1.21285 1.20346 0.92241 0.92115 0.88916 0.85249 0.88381 0.88378 0.86061 0.85082 0.92439 0.95664 0.93070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 10.56 101.05 1.07 1.63 16 2 O -0.37 -6.46 9.83 -40.50 -0.40 -6.85 16 3 C 0.48 10.07 7.82 34.61 0.27 10.34 16 4 O -0.44 -10.89 12.02 -19.24 -0.23 -11.12 16 5 C -0.13 -2.53 5.86 -104.98 -0.62 -3.15 16 6 C -0.04 -0.71 9.26 -39.17 -0.36 -1.07 16 7 C -0.16 -2.17 5.25 -104.68 -0.55 -2.72 16 8 C 0.02 0.23 6.78 36.00 0.24 0.47 16 9 Cl -0.19 -2.34 29.13 -51.86 -1.51 -3.85 16 10 C -0.07 -0.97 9.69 -39.49 -0.38 -1.35 16 11 C -0.14 -2.46 9.66 -39.64 -0.38 -2.85 16 12 C 0.04 0.76 5.11 -104.21 -0.53 0.23 16 13 C 0.04 1.05 4.40 -29.04 -0.13 0.93 16 14 C -0.48 -13.82 7.51 -34.44 -0.26 -14.08 16 15 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 16 C 0.06 1.85 5.46 -17.82 -0.10 1.75 16 17 N -0.89 -27.11 13.29 55.43 0.74 -26.38 16 18 Si 0.89 22.49 29.54 -169.99 -5.02 17.47 16 19 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 24 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.13 1.79 7.63 -52.48 -0.40 1.39 16 26 H 0.10 0.80 8.09 -51.93 -0.42 0.38 16 27 H 0.10 0.84 8.08 -51.93 -0.42 0.42 16 28 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 29 H 0.13 2.19 8.03 -52.49 -0.42 1.77 16 30 H 0.06 1.64 6.17 -51.93 -0.32 1.32 16 31 H 0.03 0.67 7.99 -51.93 -0.42 0.26 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 296.99 15.07 4.48 4.48 Total: -1.00 -32.57 296.99 -7.31 -39.87 By element: Atomic # 1 Polarization: -0.11 SS G_CDS: -3.63 Total: -3.74 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -1.73 Total: -9.87 kcal Atomic # 7 Polarization: -27.11 SS G_CDS: 0.74 Total: -26.38 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.63 Total: -17.97 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Atomic # 17 Polarization: -2.34 SS G_CDS: -1.51 Total: -3.85 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.57 -7.31 -39.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396079900.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.121 kcal (2) G-P(sol) polarization free energy of solvation -32.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds