Wall clock time and date at job start Mon Mar 30 2020 06:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34704 * 117.00275 * 2 1 4 4 O 1.21471 * 120.00073 * 359.97438 * 3 2 1 5 5 C 1.47723 * 120.00273 * 180.02562 * 3 2 1 6 6 C 1.39652 * 120.14834 * 5.66336 * 5 3 2 7 7 C 1.37918 * 119.85014 * 179.97438 * 6 5 3 8 8 C 1.50698 * 119.92994 * 179.97438 * 7 6 5 9 9 Cl 1.80305 * 109.46807 * 90.00044 * 8 7 6 10 10 C 1.38401 * 120.14607 * 359.74502 * 7 6 5 11 11 C 1.38336 * 120.30183 * 0.51533 * 10 7 6 12 12 C 1.37967 * 120.15544 * 359.48396 * 11 10 7 13 13 C 1.50694 * 120.07703 * 180.28032 * 12 11 10 14 14 C 1.50704 * 109.47199 * 100.82673 * 13 12 11 15 15 H 1.07993 * 119.99903 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99878 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00156 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99861 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47360 * 60.00065 * 18 16 14 20 20 H 1.48497 * 109.47244 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46840 * 300.00157 * 18 16 14 22 22 H 1.09004 * 109.47201 * 300.00421 * 1 2 3 23 23 H 1.09000 * 109.46965 * 59.99766 * 1 2 3 24 24 H 1.08996 * 109.47295 * 180.02562 * 1 2 3 25 25 H 1.08004 * 120.07261 * 359.95681 * 6 5 3 26 26 H 1.08998 * 109.47507 * 210.00242 * 8 7 6 27 27 H 1.09001 * 109.46727 * 330.00754 * 8 7 6 28 28 H 1.08006 * 119.84419 * 180.25205 * 10 7 6 29 29 H 1.08001 * 119.92439 * 179.76336 * 11 10 7 30 30 H 1.09006 * 109.47194 * 220.82441 * 13 12 11 31 31 H 1.08997 * 109.47413 * 340.82356 * 13 12 11 32 32 H 0.97005 * 119.99877 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5388 1.2775 -0.0006 6 6 4.3021 0.1142 -0.1203 7 6 5.6790 0.1935 -0.1206 8 6 6.5044 -1.0607 -0.2491 9 17 6.8235 -1.3942 -1.9921 10 6 6.3044 1.4230 -0.0080 11 6 5.5544 2.5788 0.1163 12 6 4.1763 2.5139 0.1181 13 6 3.3610 3.7747 0.2472 14 6 2.8565 4.1881 -1.1114 15 1 3.1014 3.5967 -1.9812 16 6 2.0814 5.3207 -1.2436 17 7 1.7828 6.0405 -0.1842 18 14 1.4555 5.8327 -2.9275 19 1 0.6087 4.7508 -3.4909 20 1 0.6522 7.0751 -2.8003 21 1 2.6086 6.0796 -3.8301 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 3.8152 -0.8455 -0.2121 26 1 7.4510 -0.9281 0.2747 27 1 5.9617 -1.8991 0.1877 28 1 7.3829 1.4799 -0.0129 29 1 6.0488 3.5347 0.2076 30 1 2.5143 3.5936 0.9095 31 1 3.9827 4.5686 0.6610 32 1 1.2378 6.8375 -0.2774 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396079900.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:21 Heat of formation + Delta-G solvation = -94.038460 kcal Electronic energy + Delta-G solvation = -18042.387319 eV Core-core repulsion = 14992.930139 eV Total energy + Delta-G solvation = -3049.457180 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.55410 -39.92067 -37.45084 -36.79468 -35.42154 -33.73410 -32.45310 -30.35821 -28.52661 -27.07856 -25.18304 -24.22366 -22.61925 -21.08986 -18.62281 -18.53011 -17.59808 -17.20352 -16.84751 -16.39299 -16.13148 -15.47629 -15.31743 -14.59720 -14.34991 -14.32257 -14.29063 -13.95898 -13.39524 -13.20346 -13.01355 -12.85042 -12.64522 -12.55376 -12.39147 -11.68484 -11.67490 -11.53274 -11.34226 -11.22823 -10.89364 -10.46115 -9.93756 -9.52008 -8.14353 -6.19808 -0.15642 0.26300 1.33227 1.36977 1.43624 1.50271 1.83632 1.87055 2.40702 2.93408 3.19971 3.57874 3.78410 4.01156 4.16519 4.25026 4.34636 4.38579 4.40627 4.54207 4.63142 4.70295 4.87969 5.01517 5.20545 5.31632 5.40327 5.42916 5.51095 5.78209 5.91390 5.93730 6.23082 6.84240 7.00836 7.42665 8.97313 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.017451 B = 0.006300 C = 0.005432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.090682 B = 4443.057527 C = 5153.256908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.362 6.362 3 C 0.481 3.519 4 O -0.492 6.492 5 C -0.152 4.152 6 C -0.037 4.037 7 C -0.140 4.140 8 C 0.025 3.975 9 Cl -0.203 7.203 10 C -0.049 4.049 11 C -0.148 4.148 12 C -0.001 4.001 13 C 0.053 3.947 14 C -0.488 4.488 15 H 0.040 0.960 16 C 0.007 3.993 17 N -0.931 5.931 18 Si 0.952 3.048 19 H -0.280 1.280 20 H -0.279 1.279 21 H -0.264 1.264 22 H 0.054 0.946 23 H 0.048 0.952 24 H 0.142 0.858 25 H 0.154 0.846 26 H 0.131 0.869 27 H 0.124 0.876 28 H 0.164 0.836 29 H 0.133 0.867 30 H 0.022 0.978 31 H 0.002 0.998 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.175 -17.269 1.473 19.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.280 6.280 3 C 0.325 3.675 4 O -0.379 6.379 5 C -0.153 4.153 6 C -0.055 4.055 7 C -0.141 4.141 8 C -0.036 4.036 9 Cl -0.176 7.176 10 C -0.067 4.067 11 C -0.166 4.166 12 C -0.002 4.002 13 C 0.016 3.984 14 C -0.527 4.527 15 H 0.058 0.942 16 C -0.190 4.190 17 N -0.572 5.572 18 Si 0.777 3.223 19 H -0.205 1.205 20 H -0.204 1.204 21 H -0.189 1.189 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.160 0.840 25 H 0.171 0.829 26 H 0.149 0.851 27 H 0.142 0.858 28 H 0.181 0.819 29 H 0.151 0.849 30 H 0.039 0.961 31 H 0.020 0.980 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.869 -16.847 1.393 18.646 hybrid contribution -1.152 1.042 -0.775 1.736 sum 6.716 -15.805 0.618 17.184 Atomic orbital electron populations 1.23451 0.75274 1.05516 1.01777 1.86471 1.24441 1.32025 1.85072 1.21659 0.90098 0.81573 0.74164 1.91064 1.67141 1.36012 1.43667 1.19006 0.88846 0.95060 1.12352 1.21420 0.93572 0.97212 0.93340 1.19826 0.93063 0.95678 1.05484 1.23302 1.02798 0.96055 0.81480 1.98745 1.96626 1.96117 1.26148 1.21570 1.01410 0.90572 0.93137 1.21159 0.91877 1.00150 1.03405 1.20667 0.95279 0.94425 0.89784 1.18292 0.93832 0.89133 0.97137 1.20897 1.31048 1.08207 0.92501 0.94165 1.25697 0.96347 0.96819 1.00123 1.70061 1.39383 1.17138 1.30592 0.85707 0.78739 0.77427 0.80390 1.20537 1.20391 1.18864 0.92762 0.93290 0.83971 0.82881 0.85052 0.85770 0.81852 0.84936 0.96053 0.97961 0.93075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 10.56 113.37 1.20 2.11 16 2 O -0.36 -12.36 9.83 -56.14 -0.55 -12.91 16 3 C 0.48 20.77 7.82 70.33 0.55 21.32 16 4 O -0.49 -26.14 12.02 19.93 0.24 -25.90 16 5 C -0.15 -6.02 5.86 -20.10 -0.12 -6.13 16 6 C -0.04 -1.08 9.26 22.54 0.21 -0.87 16 7 C -0.14 -3.30 5.25 -19.90 -0.10 -3.40 16 8 C 0.03 0.38 6.78 71.24 0.48 0.87 16 9 Cl -0.20 -4.18 29.13 -2.72 -0.08 -4.26 16 10 C -0.05 -1.24 9.69 22.33 0.22 -1.02 16 11 C -0.15 -5.16 9.66 22.23 0.21 -4.94 16 12 C 0.00 -0.05 5.11 -19.60 -0.10 -0.15 16 13 C 0.05 2.92 4.40 29.10 0.13 3.05 16 14 C -0.49 -29.28 7.51 25.60 0.19 -29.09 16 15 H 0.04 2.41 7.74 -2.91 -0.02 2.39 16 16 C 0.01 0.44 5.46 84.65 0.46 0.90 16 17 N -0.93 -59.11 13.29 21.45 0.28 -58.83 16 18 Si 0.95 47.36 29.54 68.60 2.03 49.39 16 19 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 20 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 21 H -0.26 -12.42 7.11 99.48 0.71 -11.71 16 22 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.14 2.46 8.14 -2.39 -0.02 2.44 16 25 H 0.15 3.68 7.63 -2.91 -0.02 3.65 16 26 H 0.13 1.24 8.09 -2.39 -0.02 1.22 16 27 H 0.12 1.35 8.08 -2.39 -0.02 1.33 16 28 H 0.16 2.80 8.06 -2.91 -0.02 2.77 16 29 H 0.13 4.45 8.03 -2.91 -0.02 4.42 16 30 H 0.02 1.33 6.17 -2.38 -0.01 1.31 16 31 H 0.00 0.12 7.99 -2.39 -0.02 0.11 16 32 H 0.26 15.63 8.31 -92.70 -0.77 14.86 16 Total: -1.00 -76.27 296.99 6.38 -69.90 By element: Atomic # 1 Polarization: -1.16 SS G_CDS: 1.13 Total: -0.03 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: 3.33 Total: -17.36 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: 0.28 Total: -58.83 kcal Atomic # 8 Polarization: -38.50 SS G_CDS: -0.31 Total: -38.81 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.39 kcal Atomic # 17 Polarization: -4.18 SS G_CDS: -0.08 Total: -4.26 kcal Total: -76.27 6.38 -69.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396079900.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.143 kcal (2) G-P(sol) polarization free energy of solvation -76.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds