Wall clock time and date at job start Mon Mar 30 2020 06:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45207 * 109.46840 * 2 1 4 4 C 1.34712 * 116.99629 * 179.97438 * 3 2 1 5 5 O 1.21469 * 120.00084 * 359.97438 * 4 3 2 6 6 C 1.47727 * 119.99361 * 179.97438 * 4 3 2 7 7 C 1.39630 * 120.14794 * 354.69331 * 6 4 3 8 8 C 1.38045 * 119.83392 * 179.97438 * 7 6 4 9 9 Cl 1.73605 * 119.93896 * 180.02562 * 8 7 6 10 10 C 1.38502 * 120.12735 * 0.02562 * 8 7 6 11 11 C 1.38328 * 120.28489 * 359.97438 * 10 8 7 12 12 C 1.37972 * 120.16830 * 359.74400 * 11 10 8 13 13 C 1.50697 * 120.06550 * 180.27381 * 12 11 10 14 14 C 1.50700 * 109.47041 * 103.16263 * 13 12 11 15 15 H 1.08001 * 119.99748 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00203 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99635 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00138 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46859 * 60.00488 * 18 16 14 20 20 H 1.48500 * 109.47112 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47314 * 300.00268 * 18 16 14 22 22 H 1.08998 * 109.48086 * 300.00560 * 1 2 3 23 23 H 1.09004 * 109.47080 * 60.00913 * 1 2 3 24 24 H 1.09004 * 109.47188 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46581 * 119.99088 * 2 1 3 26 26 H 1.08994 * 109.47591 * 239.99431 * 2 1 3 27 27 H 1.07995 * 120.08476 * 359.94959 * 7 6 4 28 28 H 1.07991 * 119.85739 * 180.02562 * 10 8 7 29 29 H 1.07999 * 119.91423 * 180.02562 * 11 10 8 30 30 H 1.08999 * 109.47098 * 223.16514 * 13 12 11 31 31 H 1.08994 * 109.47256 * 343.16377 * 13 12 11 32 32 H 0.96999 * 120.00183 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3494 1.5455 0.0005 5 8 4.0894 0.5822 0.0015 6 6 3.9139 2.9107 0.0000 7 6 3.0710 4.0181 -0.1127 8 6 3.6054 5.2909 -0.1120 9 17 2.5598 6.6697 -0.2513 10 6 4.9742 5.4701 -0.0003 11 6 5.8140 4.3766 0.1117 12 6 5.2923 3.0994 0.1181 13 6 6.2088 1.9100 0.2463 14 6 6.1389 1.3713 1.6520 15 1 5.4948 1.8428 2.3796 16 6 6.8964 0.2759 2.0090 17 7 7.6795 -0.2990 1.1226 18 14 6.8102 -0.3914 3.7516 19 1 5.4165 -0.8047 4.0550 20 1 7.7124 -1.5642 3.8777 21 1 7.2328 0.6638 4.7072 22 1 -0.3635 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8932 -0.5137 0.8901 26 1 1.8934 -0.5139 -0.8899 27 1 2.0036 3.8792 -0.2007 28 1 5.3876 6.4677 0.0002 29 1 6.8805 4.5232 0.1988 30 1 5.8994 1.1355 -0.4554 31 1 7.2317 2.2140 0.0242 32 1 8.2127 -1.0694 1.3738 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396084630.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:17 Heat of formation + Delta-G solvation = -74.049462 kcal Electronic energy + Delta-G solvation = -18028.437462 eV Core-core repulsion = 14979.847071 eV Total energy + Delta-G solvation = -3048.590392 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.07938 -38.50825 -36.41800 -35.81280 -33.28302 -31.80179 -31.17234 -30.70382 -27.17985 -24.49273 -23.12295 -22.67487 -21.06385 -20.12193 -17.54896 -16.53623 -16.26178 -15.93797 -15.41742 -15.00759 -14.59245 -14.12580 -13.82970 -13.12669 -13.07469 -12.91250 -12.63920 -12.24862 -11.75422 -11.67200 -11.54643 -11.35700 -11.18208 -10.98215 -10.81538 -10.66006 -10.60596 -10.09663 -9.73906 -9.45015 -9.16976 -8.73986 -8.30315 -8.01763 -5.96934 -3.97085 1.13792 1.61186 2.31833 3.09876 3.17364 3.34503 3.38225 3.41204 4.14970 4.50524 4.98795 5.11553 5.12397 5.17912 5.36346 5.40987 5.50597 5.58979 5.66889 5.89849 5.92499 5.96983 6.04902 6.17042 6.40377 6.70565 6.73305 6.94762 7.13749 7.55972 7.81356 7.95451 8.33429 8.51860 9.02423 9.62962 11.14471 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.014291 B = 0.007317 C = 0.005337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.791019 B = 3825.956176 C = 5244.997724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.064 3.936 3 O -0.369 6.369 4 C 0.490 3.510 5 O -0.439 6.439 6 C -0.117 4.117 7 C -0.058 4.058 8 C -0.075 4.075 9 Cl -0.086 7.086 10 C -0.079 4.079 11 C -0.127 4.127 12 C 0.031 3.969 13 C 0.036 3.964 14 C -0.493 4.493 15 H 0.049 0.951 16 C 0.065 3.935 17 N -0.891 5.891 18 Si 0.891 3.109 19 H -0.278 1.278 20 H -0.286 1.286 21 H -0.277 1.277 22 H 0.064 0.936 23 H 0.063 0.937 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.138 0.862 28 H 0.130 0.870 29 H 0.138 0.862 30 H 0.067 0.933 31 H 0.026 0.974 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.067 7.663 -3.604 13.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.010 4.010 3 O -0.288 6.288 4 C 0.332 3.668 5 O -0.322 6.322 6 C -0.118 4.118 7 C -0.077 4.077 8 C -0.102 4.102 9 Cl -0.057 7.057 10 C -0.098 4.098 11 C -0.145 4.145 12 C 0.030 3.970 13 C 0.000 4.000 14 C -0.531 4.531 15 H 0.068 0.932 16 C -0.136 4.136 17 N -0.530 5.530 18 Si 0.719 3.281 19 H -0.204 1.204 20 H -0.212 1.212 21 H -0.203 1.203 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.094 0.906 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.156 0.844 28 H 0.148 0.852 29 H 0.156 0.844 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.811 7.286 -3.638 13.536 hybrid contribution -0.147 -0.400 1.045 1.128 sum -10.959 6.886 -2.594 13.200 Atomic orbital electron populations 1.21781 0.93244 1.02507 1.03134 1.22887 0.94606 0.80848 1.02692 1.86488 1.24971 1.31670 1.85670 1.21002 0.80171 0.90204 0.75449 1.91028 1.58552 1.41539 1.41117 1.18876 0.93509 0.89602 1.09858 1.21202 1.00308 0.89904 0.96261 1.20563 0.91164 0.87710 1.10715 1.98329 1.67157 1.43343 1.96864 1.21215 0.91184 0.99868 0.97506 1.21092 1.00403 0.90873 1.02161 1.21070 0.92847 0.97512 0.85530 1.18765 0.92238 0.89734 0.99238 1.20683 1.25083 1.13287 0.94073 0.93241 1.24857 0.95434 0.96306 0.97038 1.69929 1.27173 1.22095 1.33763 0.86680 0.77899 0.78508 0.85039 1.20408 1.21206 1.20286 0.91695 0.91788 0.90627 0.91227 0.91495 0.84398 0.85180 0.84396 0.91537 0.95539 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 10.29 37.16 0.38 -1.20 16 2 C 0.06 0.94 6.19 37.16 0.23 1.17 16 3 O -0.37 -6.47 9.49 -40.52 -0.38 -6.85 16 4 C 0.49 10.22 7.75 34.61 0.27 10.49 16 5 O -0.44 -10.80 12.17 -19.24 -0.23 -11.04 16 6 C -0.12 -2.31 5.85 -104.99 -0.61 -2.93 16 7 C -0.06 -0.95 9.40 -39.13 -0.37 -1.32 16 8 C -0.08 -1.15 6.31 -39.55 -0.25 -1.40 16 9 Cl -0.09 -1.12 28.95 -51.86 -1.50 -2.62 16 10 C -0.08 -1.18 9.82 -39.45 -0.39 -1.57 16 11 C -0.13 -2.23 9.65 -39.65 -0.38 -2.61 16 12 C 0.03 0.65 5.13 -104.21 -0.53 0.12 16 13 C 0.04 0.93 4.41 -29.04 -0.13 0.81 16 14 C -0.49 -13.85 7.68 -34.44 -0.26 -14.11 16 15 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 16 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 17 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 18 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.14 2.03 7.62 -52.49 -0.40 1.63 16 28 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 29 H 0.14 2.22 8.01 -52.49 -0.42 1.80 16 30 H 0.07 1.87 5.99 -51.93 -0.31 1.56 16 31 H 0.03 0.69 7.97 -51.93 -0.41 0.28 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 297.09 15.07 4.48 4.48 Total: -1.00 -30.98 297.09 -7.69 -38.67 By element: Atomic # 1 Polarization: 0.65 SS G_CDS: -3.62 Total: -2.98 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -2.15 Total: -10.78 kcal Atomic # 7 Polarization: -26.67 SS G_CDS: 0.74 Total: -25.93 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.62 Total: -17.89 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -1.50 Total: -2.62 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.98 -7.69 -38.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396084630.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.376 kcal (2) G-P(sol) polarization free energy of solvation -30.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds