Wall clock time and date at job start Mon Mar 30 2020 06:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45199 * 109.47300 * 2 1 4 4 C 1.34718 * 117.00067 * 179.97438 * 3 2 1 5 5 O 1.21484 * 120.00147 * 0.02562 * 4 3 2 6 6 C 1.47646 * 120.00011 * 179.97438 * 4 3 2 7 7 C 1.39681 * 120.16144 * 0.02562 * 6 4 3 8 8 C 1.37878 * 119.85988 * 179.72919 * 7 6 4 9 9 C 1.38434 * 120.18730 * 0.52281 * 8 7 6 10 10 C 1.50700 * 119.83299 * 179.72856 * 9 8 7 11 11 C 1.50702 * 109.46869 * 269.72495 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11 17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11 19 19 C 1.38264 * 120.32666 * 359.45158 * 9 8 7 20 20 C 1.38136 * 120.13854 * 0.29694 * 19 9 8 21 21 Cl 1.73606 * 120.09594 * 179.97438 * 20 19 9 22 22 H 1.09000 * 109.47307 * 179.97438 * 1 2 3 23 23 H 1.08991 * 109.47664 * 300.00554 * 1 2 3 24 24 H 1.09004 * 109.46483 * 60.00487 * 1 2 3 25 25 H 1.09000 * 109.47374 * 239.99360 * 2 1 3 26 26 H 1.09009 * 109.46907 * 119.99695 * 2 1 3 27 27 H 1.08004 * 120.07031 * 359.97438 * 7 6 4 28 28 H 1.08002 * 119.90474 * 180.25476 * 8 7 6 29 29 H 1.09004 * 109.47210 * 149.72788 * 10 9 8 30 30 H 1.08994 * 109.47551 * 29.72440 * 10 9 8 31 31 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 32 32 H 1.08009 * 119.93176 * 180.27472 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3496 1.5454 0.0005 5 8 4.0896 0.5820 0.0005 6 6 3.9139 2.9098 0.0000 7 6 3.0662 4.0199 -0.0005 8 6 3.5999 5.2912 0.0046 9 6 4.9727 5.4699 -0.0006 10 6 5.5474 6.8630 -0.0011 11 6 5.7396 7.3265 -1.4221 12 1 5.4719 6.6774 -2.2428 13 6 6.2513 8.5817 -1.6746 14 7 6.5769 9.3723 -0.6753 15 14 6.4824 9.1592 -3.4359 16 1 5.1710 9.1597 -4.1328 17 1 7.0442 10.5338 -3.4365 18 1 7.4161 8.2431 -4.1389 19 6 5.8190 4.3765 0.0004 20 6 5.2989 3.0968 0.0004 21 17 6.3625 1.7248 0.0010 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8898 24 1 -0.3632 0.5138 -0.8901 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 1.9949 3.8828 -0.0010 28 1 2.9451 6.1501 0.0084 29 1 6.5085 6.8597 0.5131 30 1 4.8631 7.5386 0.5120 31 1 6.9373 10.2552 -0.8529 32 1 6.8891 4.5233 0.0008 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396090759.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:09 Heat of formation + Delta-G solvation = -78.818030 kcal Electronic energy + Delta-G solvation = -17363.287306 eV Core-core repulsion = 14314.490134 eV Total energy + Delta-G solvation = -3048.797172 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.38202 -38.69598 -36.50175 -36.03181 -33.65904 -32.09623 -31.33565 -30.41657 -27.79105 -24.56685 -23.26207 -22.26932 -21.74105 -20.37616 -17.88880 -16.82837 -16.52157 -16.43642 -15.36694 -15.04423 -14.53969 -14.26476 -14.16109 -13.50234 -13.13275 -13.05641 -12.87862 -12.35845 -11.96607 -11.78719 -11.68347 -11.59834 -11.13077 -11.03579 -10.93742 -10.74904 -10.58197 -10.55798 -9.96968 -9.66197 -9.56524 -8.54752 -8.49433 -8.23894 -6.17086 -4.22442 0.97552 1.58892 2.40560 2.70244 2.81068 3.26200 3.30808 3.33925 4.04785 4.36579 4.71918 4.78051 4.87135 5.04814 5.11630 5.18824 5.42710 5.47176 5.59981 5.66445 5.75145 5.78091 5.94856 6.19445 6.40161 6.46713 6.66518 6.81174 7.13545 7.35695 7.54096 7.77468 7.90180 8.11807 8.81890 9.42586 10.92776 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.025417 B = 0.004498 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.376643 B = 6223.366758 C = 6779.108505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.064 3.936 3 O -0.357 6.357 4 C 0.509 3.491 5 O -0.496 6.496 6 C -0.158 4.158 7 C -0.051 4.051 8 C -0.136 4.136 9 C 0.019 3.981 10 C 0.043 3.957 11 C -0.519 4.519 12 H 0.059 0.941 13 C 0.062 3.938 14 N -0.891 5.891 15 Si 0.898 3.102 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.275 1.275 19 C -0.130 4.130 20 C 0.025 3.975 21 Cl -0.051 7.051 22 H 0.077 0.923 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.137 0.863 28 H 0.135 0.865 29 H 0.036 0.964 30 H 0.038 0.962 31 H 0.265 0.735 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.124 -13.981 2.408 16.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.010 4.010 3 O -0.274 6.274 4 C 0.355 3.645 5 O -0.385 6.385 6 C -0.160 4.160 7 C -0.069 4.069 8 C -0.154 4.154 9 C 0.019 3.981 10 C 0.006 3.994 11 C -0.557 4.557 12 H 0.077 0.923 13 C -0.140 4.140 14 N -0.529 5.529 15 Si 0.726 3.274 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.200 1.200 19 C -0.148 4.148 20 C -0.002 4.002 21 Cl -0.022 7.022 22 H 0.096 0.904 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.155 0.845 28 H 0.153 0.847 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.756 -14.253 2.454 16.907 hybrid contribution 0.283 0.116 -0.988 1.034 sum -8.473 -14.137 1.466 16.547 Atomic orbital electron populations 1.21800 0.92754 1.02782 1.03576 1.22967 0.95147 0.80396 1.02511 1.86539 1.24209 1.31992 1.84704 1.21079 0.80405 0.89870 0.73174 1.90888 1.59762 1.42354 1.45470 1.18620 0.91802 0.90618 1.14997 1.21338 0.99510 0.91246 0.94832 1.21239 0.95502 0.96704 1.01975 1.21042 0.92790 0.98027 0.86276 1.18517 0.96985 0.85533 0.98374 1.20938 1.43595 1.00303 0.90905 0.92266 1.24993 0.95066 0.96490 0.97497 1.69936 1.42847 1.09201 1.30914 0.86547 0.78689 0.77812 0.84388 1.20041 1.21128 1.20029 1.21036 1.01451 0.89092 1.03259 1.21008 0.89275 0.89378 1.00545 1.98376 1.64611 1.42896 1.96268 0.90398 0.91463 0.91445 0.91330 0.91346 0.84501 0.84694 0.94552 0.94414 0.92545 0.84227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.29 37.16 0.38 -0.75 16 2 C 0.06 0.67 6.19 37.16 0.23 0.90 16 3 O -0.36 -4.89 9.47 -40.54 -0.38 -5.27 16 4 C 0.51 8.24 7.89 34.57 0.27 8.52 16 5 O -0.50 -8.79 13.76 -19.25 -0.26 -9.06 16 6 C -0.16 -2.67 5.88 -104.95 -0.62 -3.29 16 7 C -0.05 -0.79 9.62 -39.17 -0.38 -1.17 16 8 C -0.14 -2.35 9.68 -39.64 -0.38 -2.74 16 9 C 0.02 0.38 5.07 -104.54 -0.53 -0.15 16 10 C 0.04 1.01 5.10 -29.03 -0.15 0.86 16 11 C -0.52 -13.67 9.09 -34.44 -0.31 -13.99 16 12 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -25.09 13.29 55.43 0.74 -24.35 16 15 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 16 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 19 C -0.13 -2.43 9.46 -39.61 -0.37 -2.81 16 20 C 0.03 0.45 6.35 -39.05 -0.25 0.20 16 21 Cl -0.05 -0.87 26.03 -51.86 -1.35 -2.22 16 22 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 23 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 27 H 0.14 1.75 7.61 -52.48 -0.40 1.35 16 28 H 0.14 2.16 8.06 -52.49 -0.42 1.74 16 29 H 0.04 0.90 8.08 -51.93 -0.42 0.48 16 30 H 0.04 0.92 8.08 -51.93 -0.42 0.50 16 31 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.14 2.55 8.06 -52.48 -0.42 2.12 16 LS Contribution 300.13 15.07 4.52 4.52 Total: -1.00 -28.87 300.13 -7.70 -36.57 By element: Atomic # 1 Polarization: 0.69 SS G_CDS: -3.74 Total: -3.05 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -2.20 Total: -12.84 kcal Atomic # 7 Polarization: -25.09 SS G_CDS: 0.74 Total: -24.35 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.65 Total: -14.33 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.35 Total: -2.22 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.87 -7.70 -36.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396090759.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.249 kcal (2) G-P(sol) polarization free energy of solvation -28.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds