Wall clock time and date at job start Mon Mar 30 2020 07:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34230 * 117.00411 * 2 1 4 4 O 1.20834 * 119.99603 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00299 * 179.97438 * 3 2 1 6 6 C 1.53007 * 109.47179 * 179.97438 * 5 3 2 7 7 C 1.50695 * 109.47179 * 180.02562 * 6 5 3 8 8 C 1.38681 * 119.73929 * 270.02630 * 7 6 5 9 9 C 1.36577 * 120.41756 * 179.71341 * 8 7 6 10 10 C 1.40718 * 119.88227 * 0.51701 * 9 8 7 11 11 C 1.41330 * 120.25629 * 179.76025 * 10 9 8 12 12 H 1.08010 * 120.00087 * 205.43753 * 11 10 9 13 13 C 1.39943 * 119.99989 * 25.44447 * 11 10 9 14 14 N 1.30825 * 120.00234 * 16.95683 * 13 11 10 15 15 Si 1.86808 * 119.99743 * 196.95701 * 13 11 10 16 16 H 1.48493 * 109.47089 * 265.18285 * 15 13 11 17 17 H 1.48497 * 109.47014 * 25.18816 * 15 13 11 18 18 H 1.48506 * 109.46614 * 145.18150 * 15 13 11 19 19 C 1.40866 * 119.48818 * 359.48504 * 10 9 8 20 20 Cl 1.73590 * 120.20977 * 180.27477 * 19 10 9 21 21 C 1.37861 * 119.58202 * 0.25773 * 19 10 9 22 22 H 1.08988 * 109.47096 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47113 * 300.00998 * 1 2 3 24 24 H 1.09002 * 109.46408 * 59.99977 * 1 2 3 25 25 H 1.09001 * 109.47105 * 59.99852 * 5 3 2 26 26 H 1.08996 * 109.47035 * 299.99732 * 5 3 2 27 27 H 1.09001 * 109.46836 * 60.00161 * 6 5 3 28 28 H 1.08999 * 109.47025 * 300.00476 * 6 5 3 29 29 H 1.08000 * 119.79380 * 359.97438 * 8 7 6 30 30 H 1.07997 * 120.06140 * 180.25562 * 9 8 7 31 31 H 0.97001 * 120.00238 * 180.02562 * 14 13 11 32 32 H 1.07996 * 119.94493 * 179.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0003 2.7421 -0.0002 7 6 5.5052 2.8209 -0.0002 8 6 6.1922 2.8570 1.2039 9 6 7.5563 2.9225 1.2200 10 6 8.2705 2.9648 0.0083 11 6 9.6819 3.0378 0.0158 12 1 10.2048 3.4708 -0.8243 13 6 10.4021 2.5489 1.1116 14 7 9.8271 1.7398 1.9639 15 14 12.1844 3.0516 1.3574 16 1 13.0752 2.0248 0.7599 17 1 12.4250 4.3601 0.6978 18 1 12.4695 3.1697 2.8100 19 6 7.5682 2.9278 -1.2122 20 17 8.4308 2.9717 -2.7180 21 6 6.1915 2.8563 -1.2033 22 1 -0.3633 -1.0275 -0.0005 23 1 -0.3633 0.5140 0.8899 24 1 -0.3632 0.5139 -0.8900 25 1 3.9565 0.7805 -0.8891 26 1 3.9557 0.7809 0.8908 27 1 3.6102 3.2367 0.8894 28 1 3.6109 3.2356 -0.8906 29 1 5.6453 2.8288 2.1348 30 1 8.0857 2.9462 2.1610 31 1 10.3262 1.4012 2.7236 32 1 5.6471 2.8281 -2.1356 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396113723.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:18 Heat of formation + Delta-G solvation = -96.379065 kcal Electronic energy + Delta-G solvation = -17299.910569 eV Core-core repulsion = 14250.351893 eV Total energy + Delta-G solvation = -3049.558676 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.35227 -37.99778 -36.49912 -35.11137 -34.38447 -32.63226 -29.65808 -29.31968 -27.84912 -25.82413 -23.28919 -21.20976 -20.77342 -19.79983 -17.51658 -17.47304 -16.54443 -16.40277 -15.49147 -14.65827 -14.40741 -14.04346 -13.63513 -13.48661 -12.73100 -12.60266 -12.48336 -12.33315 -12.05977 -11.75818 -11.36879 -11.19894 -11.06125 -10.82910 -10.74198 -10.53089 -10.35748 -10.20101 -9.99957 -9.74001 -9.32254 -9.26210 -7.54622 -7.40591 -6.90725 -4.48804 2.32284 2.52939 2.76469 2.86433 3.02026 3.06074 3.13131 3.68165 3.85060 4.44480 4.91546 5.01709 5.07694 5.31863 5.37778 5.41202 5.61347 5.83668 6.04520 6.10967 6.25079 6.37951 6.42671 6.56972 6.91446 7.00237 7.13116 7.33832 7.54583 7.79506 7.84948 7.90665 8.06984 8.43274 8.67816 8.72525 10.02462 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.027928 B = 0.004317 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.344125 B = 6484.819392 C = 7121.714775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.460 3.540 4 O -0.513 6.513 5 C -0.108 4.108 6 C -0.038 4.038 7 C -0.213 4.213 8 C -0.090 4.090 9 C -0.154 4.154 10 C 0.119 3.881 11 C -0.444 4.444 12 H 0.088 0.912 13 C 0.076 3.924 14 N -0.785 5.785 15 Si 0.910 3.090 16 H -0.269 1.269 17 H -0.258 1.258 18 H -0.274 1.274 19 C -0.140 4.140 20 Cl -0.120 7.120 21 C -0.069 4.069 22 H 0.097 0.903 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.105 0.895 26 H 0.106 0.894 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.124 0.876 31 H 0.283 0.717 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.853 -2.791 -0.823 9.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.280 6.280 3 C 0.303 3.697 4 O -0.400 6.400 5 C -0.146 4.146 6 C -0.076 4.076 7 C -0.214 4.214 8 C -0.109 4.109 9 C -0.173 4.173 10 C 0.116 3.884 11 C -0.473 4.473 12 H 0.106 0.894 13 C -0.143 4.143 14 N -0.410 5.410 15 Si 0.733 3.267 16 H -0.194 1.194 17 H -0.182 1.182 18 H -0.199 1.199 19 C -0.168 4.168 20 Cl -0.092 7.092 21 C -0.088 4.088 22 H 0.116 0.884 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.123 0.877 26 H 0.124 0.876 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.111 0.889 30 H 0.142 0.858 31 H 0.094 0.906 32 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.951 -2.641 -0.739 9.361 hybrid contribution 0.640 0.068 0.057 0.646 sum -8.311 -2.573 -0.682 8.727 Atomic orbital electron populations 1.23204 0.77071 1.03324 1.02337 1.86557 1.22970 1.34200 1.84322 1.24361 0.92780 0.80927 0.71584 1.90641 1.67447 1.36385 1.45566 1.21657 0.85241 1.01665 1.06031 1.20011 0.93177 0.91967 1.02410 1.18815 0.92649 1.17148 0.92827 1.20366 0.94656 1.00322 0.95562 1.21003 0.92344 1.05701 0.98253 1.17444 0.93591 0.88208 0.89194 1.19721 0.91303 1.33450 1.02805 0.89399 1.25959 1.01209 0.92598 0.94537 1.69808 1.38797 1.21212 1.11140 0.86261 0.81506 0.80469 0.78421 1.19372 1.18196 1.19926 1.20762 0.91039 1.19904 0.85062 1.98203 1.78858 1.97716 1.34415 1.20260 0.91921 1.00169 0.96426 0.88407 0.92102 0.92118 0.87730 0.87625 0.91690 0.91851 0.88936 0.85838 0.90578 0.88381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 101.05 1.07 1.40 16 2 O -0.36 -4.75 10.57 -39.26 -0.41 -5.16 16 3 C 0.46 6.76 7.96 36.00 0.29 7.04 16 4 O -0.51 -8.72 15.73 -18.76 -0.30 -9.01 16 5 C -0.11 -1.57 5.79 -27.88 -0.16 -1.74 16 6 C -0.04 -0.64 4.62 -27.88 -0.13 -0.77 16 7 C -0.21 -4.27 5.15 -104.34 -0.54 -4.81 16 8 C -0.09 -1.93 9.62 -40.02 -0.38 -2.32 16 9 C -0.15 -3.71 8.64 -39.25 -0.34 -4.05 16 10 C 0.12 3.01 5.57 -106.79 -0.59 2.41 16 11 C -0.44 -11.28 8.52 -37.77 -0.32 -11.60 16 12 H 0.09 2.21 7.14 -52.48 -0.37 1.83 16 13 C 0.08 1.82 5.15 -17.34 -0.09 1.73 16 14 N -0.79 -19.14 10.97 55.55 0.61 -18.53 16 15 Si 0.91 18.01 29.59 -169.99 -5.03 12.98 16 16 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 17 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 18 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 19 C -0.14 -3.30 6.38 -38.73 -0.25 -3.55 16 20 Cl -0.12 -2.59 27.62 -51.86 -1.43 -4.02 16 21 C -0.07 -1.46 9.47 -39.60 -0.37 -1.84 16 22 H 0.10 0.65 8.14 -51.94 -0.42 0.22 16 23 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 24 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 25 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 26 H 0.11 1.47 8.14 -51.93 -0.42 1.04 16 27 H 0.06 1.08 8.04 -51.93 -0.42 0.66 16 28 H 0.06 1.05 8.04 -51.93 -0.42 0.63 16 29 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.12 3.07 6.20 -52.49 -0.33 2.75 16 31 H 0.28 6.26 8.30 -40.82 -0.34 5.93 16 32 H 0.10 1.89 8.06 -52.49 -0.42 1.46 16 LS Contribution 297.73 15.07 4.49 4.49 Total: -1.00 -27.10 297.73 -7.53 -34.63 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -3.63 Total: 2.71 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: -1.83 Total: -18.07 kcal Atomic # 7 Polarization: -19.14 SS G_CDS: 0.61 Total: -18.53 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.71 Total: -14.18 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.98 kcal Atomic # 17 Polarization: -2.59 SS G_CDS: -1.43 Total: -4.02 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -27.10 -7.53 -34.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396113723.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.753 kcal (2) G-P(sol) polarization free energy of solvation -27.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds