Wall clock time and date at job start Mon Mar 30 2020 07:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34230 * 117.00411 * 2 1 4 4 O 1.20834 * 119.99603 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00299 * 179.97438 * 3 2 1 6 6 C 1.53007 * 109.47179 * 179.97438 * 5 3 2 7 7 C 1.50695 * 109.47179 * 180.02562 * 6 5 3 8 8 C 1.38681 * 119.73929 * 270.02630 * 7 6 5 9 9 C 1.36577 * 120.41756 * 179.71341 * 8 7 6 10 10 C 1.40718 * 119.88227 * 0.51701 * 9 8 7 11 11 C 1.41330 * 120.25629 * 179.76025 * 10 9 8 12 12 H 1.08010 * 120.00087 * 205.43753 * 11 10 9 13 13 C 1.39943 * 119.99989 * 25.44447 * 11 10 9 14 14 N 1.30825 * 120.00234 * 16.95683 * 13 11 10 15 15 Si 1.86808 * 119.99743 * 196.95701 * 13 11 10 16 16 H 1.48493 * 109.47089 * 265.18285 * 15 13 11 17 17 H 1.48497 * 109.47014 * 25.18816 * 15 13 11 18 18 H 1.48506 * 109.46614 * 145.18150 * 15 13 11 19 19 C 1.40866 * 119.48818 * 359.48504 * 10 9 8 20 20 Cl 1.73590 * 120.20977 * 180.27477 * 19 10 9 21 21 C 1.37861 * 119.58202 * 0.25773 * 19 10 9 22 22 H 1.08988 * 109.47096 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47113 * 300.00998 * 1 2 3 24 24 H 1.09002 * 109.46408 * 59.99977 * 1 2 3 25 25 H 1.09001 * 109.47105 * 59.99852 * 5 3 2 26 26 H 1.08996 * 109.47035 * 299.99732 * 5 3 2 27 27 H 1.09001 * 109.46836 * 60.00161 * 6 5 3 28 28 H 1.08999 * 109.47025 * 300.00476 * 6 5 3 29 29 H 1.08000 * 119.79380 * 359.97438 * 8 7 6 30 30 H 1.07997 * 120.06140 * 180.25562 * 9 8 7 31 31 H 0.97001 * 120.00238 * 180.02562 * 14 13 11 32 32 H 1.07996 * 119.94493 * 179.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0003 2.7421 -0.0002 7 6 5.5052 2.8209 -0.0002 8 6 6.1922 2.8570 1.2039 9 6 7.5563 2.9225 1.2200 10 6 8.2705 2.9648 0.0083 11 6 9.6819 3.0378 0.0158 12 1 10.2048 3.4708 -0.8243 13 6 10.4021 2.5489 1.1116 14 7 9.8271 1.7398 1.9639 15 14 12.1844 3.0516 1.3574 16 1 13.0752 2.0248 0.7599 17 1 12.4250 4.3601 0.6978 18 1 12.4695 3.1697 2.8100 19 6 7.5682 2.9278 -1.2122 20 17 8.4308 2.9717 -2.7180 21 6 6.1915 2.8563 -1.2033 22 1 -0.3633 -1.0275 -0.0005 23 1 -0.3633 0.5140 0.8899 24 1 -0.3632 0.5139 -0.8900 25 1 3.9565 0.7805 -0.8891 26 1 3.9557 0.7809 0.8908 27 1 3.6102 3.2367 0.8894 28 1 3.6109 3.2356 -0.8906 29 1 5.6453 2.8288 2.1348 30 1 8.0857 2.9462 2.1610 31 1 10.3262 1.4012 2.7236 32 1 5.6471 2.8281 -2.1356 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396113723.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:17 Heat of formation + Delta-G solvation = -108.667060 kcal Electronic energy + Delta-G solvation = -17300.443417 eV Core-core repulsion = 14250.351893 eV Total energy + Delta-G solvation = -3050.091523 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.47011 -39.69278 -37.62095 -36.82480 -36.05900 -34.15331 -31.23215 -31.06126 -28.91438 -27.28197 -24.78048 -22.94869 -22.13424 -21.25021 -19.27218 -18.65238 -17.63014 -17.48701 -17.20367 -16.21837 -15.91133 -15.73136 -14.90870 -14.61531 -14.34183 -14.17351 -13.87305 -13.74599 -13.43087 -13.04709 -12.86477 -12.75102 -12.68202 -12.26066 -12.06224 -11.85260 -11.74745 -11.73074 -11.51382 -11.45889 -11.05238 -11.00795 -9.30634 -9.17420 -8.66217 -6.33700 0.85028 1.00711 1.19166 1.40192 1.47409 1.54458 1.83070 1.92976 2.21472 2.69798 3.60614 3.82526 4.15094 4.26014 4.32073 4.34868 4.40682 4.52943 4.66110 4.74044 4.80013 4.87646 5.13542 5.17836 5.28269 5.35682 5.41459 5.58676 5.81205 6.00418 6.15725 6.29074 6.61259 6.74992 6.86588 6.91450 8.29382 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.027928 B = 0.004317 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.344125 B = 6484.819392 C = 7121.714775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.367 6.367 3 C 0.467 3.533 4 O -0.539 6.539 5 C -0.104 4.104 6 C -0.033 4.033 7 C -0.194 4.194 8 C -0.092 4.092 9 C -0.174 4.174 10 C 0.089 3.911 11 C -0.480 4.480 12 H 0.079 0.921 13 C 0.041 3.959 14 N -0.814 5.814 15 Si 0.975 3.025 16 H -0.264 1.264 17 H -0.261 1.261 18 H -0.263 1.263 19 C -0.158 4.158 20 Cl -0.110 7.110 21 C -0.075 4.075 22 H 0.131 0.869 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.116 0.884 30 H 0.109 0.891 31 H 0.290 0.710 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.962 -3.362 -0.856 10.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C 0.312 3.688 4 O -0.429 6.429 5 C -0.142 4.142 6 C -0.070 4.070 7 C -0.196 4.196 8 C -0.110 4.110 9 C -0.194 4.194 10 C 0.086 3.914 11 C -0.509 4.509 12 H 0.097 0.903 13 C -0.176 4.176 14 N -0.440 5.440 15 Si 0.796 3.204 16 H -0.189 1.189 17 H -0.185 1.185 18 H -0.188 1.188 19 C -0.185 4.185 20 Cl -0.082 7.082 21 C -0.093 4.093 22 H 0.149 0.851 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.133 0.867 26 H 0.132 0.868 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.134 0.866 30 H 0.127 0.873 31 H 0.101 0.899 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.079 -3.231 -0.777 10.613 hybrid contribution 0.778 0.205 0.018 0.805 sum -9.301 -3.026 -0.759 9.810 Atomic orbital electron populations 1.23540 0.74985 1.05616 1.02488 1.86531 1.24982 1.33066 1.83761 1.24202 0.92662 0.81017 0.70893 1.90637 1.68005 1.37292 1.47004 1.21515 0.85623 1.00028 1.06995 1.19947 0.90446 0.93792 1.02853 1.19171 0.94504 1.14003 0.91898 1.20641 0.93847 0.99281 0.97236 1.20993 0.93544 1.07350 0.97503 1.17757 0.94130 0.89234 0.90271 1.19842 0.91863 1.35432 1.03754 0.90278 1.26658 1.04915 0.92099 0.93902 1.69837 1.40429 1.21934 1.11761 0.85293 0.76653 0.79773 0.78715 1.18917 1.18503 1.18766 1.21028 0.92091 1.20122 0.85266 1.98191 1.78897 1.97696 1.33431 1.20565 0.91254 0.99638 0.97880 0.85123 0.91995 0.91991 0.86746 0.86765 0.91322 0.91433 0.86602 0.87333 0.89876 0.86189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.64 16 2 O -0.37 -8.64 10.57 -51.41 -0.54 -9.18 16 3 C 0.47 12.65 7.96 71.23 0.57 13.21 16 4 O -0.54 -17.28 15.73 21.94 0.35 -16.93 16 5 C -0.10 -2.76 5.79 29.85 0.17 -2.58 16 6 C -0.03 -1.02 4.62 29.85 0.14 -0.88 16 7 C -0.19 -7.46 5.15 -19.68 -0.10 -7.56 16 8 C -0.09 -3.83 9.62 21.99 0.21 -3.62 16 9 C -0.17 -8.54 8.64 22.49 0.19 -8.34 16 10 C 0.09 4.59 5.57 -21.27 -0.12 4.47 16 11 C -0.48 -25.00 8.52 23.44 0.20 -24.80 16 12 H 0.08 4.10 7.14 -2.91 -0.02 4.07 16 13 C 0.04 1.97 5.15 85.26 0.44 2.41 16 14 N -0.81 -40.40 10.97 21.83 0.24 -40.16 16 15 Si 0.97 37.26 29.59 68.60 2.03 39.29 16 16 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 17 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 18 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 19 C -0.16 -7.41 6.38 22.82 0.15 -7.26 16 20 Cl -0.11 -4.75 27.62 -2.72 -0.08 -4.82 16 21 C -0.07 -3.07 9.47 22.26 0.21 -2.86 16 22 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.06 1.03 8.13 -2.39 -0.02 1.01 16 24 H 0.06 1.02 8.13 -2.39 -0.02 1.00 16 25 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 26 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 27 H 0.07 2.10 8.04 -2.39 -0.02 2.08 16 28 H 0.07 2.07 8.04 -2.39 -0.02 2.05 16 29 H 0.12 4.22 8.06 -2.91 -0.02 4.20 16 30 H 0.11 5.56 6.20 -2.91 -0.02 5.55 16 31 H 0.29 12.99 8.30 -92.71 -0.77 12.22 16 32 H 0.12 4.35 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -58.12 297.73 6.38 -51.74 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 1.13 Total: 16.24 kcal Atomic # 6 Polarization: -39.43 SS G_CDS: 3.26 Total: -36.18 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.24 Total: -40.16 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.20 Total: -26.11 kcal Atomic # 14 Polarization: 37.26 SS G_CDS: 2.03 Total: 39.29 kcal Atomic # 17 Polarization: -4.75 SS G_CDS: -0.08 Total: -4.82 kcal Total: -58.12 6.38 -51.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396113723.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.930 kcal (2) G-P(sol) polarization free energy of solvation -58.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds