Wall clock time and date at job start Mon Mar 30 2020 07:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34235 * 117.00219 * 2 1 4 4 O 1.20821 * 119.99647 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00026 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.47055 * 179.97438 * 5 3 2 7 7 C 1.50703 * 109.47235 * 179.97438 * 6 5 3 8 8 C 1.38639 * 119.86687 * 269.72779 * 7 6 5 9 9 C 1.38736 * 120.48428 * 179.72031 * 8 7 6 10 10 Cl 1.73599 * 119.88926 * 180.28079 * 9 8 7 11 11 C 1.37756 * 120.21909 * 0.55841 * 9 8 7 12 12 C 1.40673 * 119.73567 * 359.71985 * 11 9 8 13 13 C 1.41394 * 120.24056 * 180.02562 * 12 11 9 14 14 H 1.07997 * 120.00687 * 155.20566 * 13 12 11 15 15 C 1.39948 * 119.99947 * 335.21033 * 13 12 11 16 16 N 1.30825 * 120.00066 * 342.29671 * 15 13 12 17 17 Si 1.86797 * 120.00039 * 162.29439 * 15 13 12 18 18 H 1.48495 * 109.47237 * 60.00096 * 17 15 13 19 19 H 1.48506 * 109.47194 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.47023 * 299.99751 * 17 15 13 21 21 C 1.37599 * 119.87032 * 90.00586 * 7 6 5 22 22 H 1.09004 * 109.47224 * 60.00145 * 1 2 3 23 23 H 1.08997 * 109.47143 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46877 * 300.00100 * 1 2 3 25 25 H 1.08993 * 109.47321 * 299.99734 * 5 3 2 26 26 H 1.09007 * 109.47540 * 60.00003 * 5 3 2 27 27 H 1.08996 * 109.47559 * 300.00708 * 6 5 3 28 28 H 1.09007 * 109.46949 * 60.00221 * 6 5 3 29 29 H 1.07997 * 119.75509 * 359.97438 * 8 7 6 30 30 H 1.08000 * 120.13131 * 179.75007 * 11 9 8 31 31 H 0.97001 * 120.00348 * 180.02562 * 16 15 13 32 32 H 1.08002 * 120.11347 * 359.97438 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7420 -0.0011 7 6 5.5051 2.8209 -0.0011 8 6 6.1942 2.8632 1.2012 9 6 7.5799 2.9300 1.2162 10 17 8.4274 2.9749 2.7306 11 6 8.2851 2.9667 0.0335 12 6 7.5950 2.9301 -1.1918 13 6 8.3082 2.9666 -2.4121 14 1 7.8692 2.5505 -3.3069 15 6 9.5830 3.5418 -2.4606 16 7 9.9772 4.3405 -1.5023 17 14 10.7220 3.1692 -3.8936 18 1 10.0828 3.6064 -5.1606 19 1 12.0039 3.8957 -3.7089 20 1 10.9850 1.7087 -3.9500 21 6 6.1895 2.8565 -1.1942 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 3.9564 0.7806 0.8891 26 1 3.9557 0.7809 -0.8909 27 1 3.6100 3.2360 -0.8909 28 1 3.6107 3.2364 0.8890 29 1 5.6485 2.8398 2.1329 30 1 9.3636 3.0228 0.0468 31 1 10.8607 4.7395 -1.5361 32 1 5.6500 2.8275 -2.1294 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396117047.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:23 Heat of formation + Delta-G solvation = -97.734846 kcal Electronic energy + Delta-G solvation = -17262.497157 eV Core-core repulsion = 14212.879690 eV Total energy + Delta-G solvation = -3049.617467 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.39556 -38.01636 -36.53589 -35.45443 -34.38803 -32.72395 -29.85221 -29.26985 -27.49914 -25.48051 -24.15390 -20.91846 -20.89705 -19.93745 -17.69625 -16.94546 -16.58468 -16.40581 -15.54077 -14.88451 -14.52357 -14.11200 -13.64380 -13.55920 -12.86296 -12.67270 -12.56197 -12.12828 -12.10920 -11.63607 -11.55170 -11.22221 -11.01034 -10.90251 -10.82919 -10.62291 -10.43589 -10.29724 -10.04549 -9.81399 -9.61032 -9.22037 -7.56376 -7.41099 -6.88028 -4.51630 2.28450 2.55742 2.60524 2.89036 3.02014 3.03424 3.11841 3.29944 3.84742 4.42509 4.85170 4.99825 5.06014 5.26415 5.30883 5.39299 5.53928 5.75393 5.95945 6.08125 6.31019 6.37429 6.50721 6.62485 6.86821 6.96452 7.13211 7.25682 7.63577 7.75594 7.80024 7.84889 8.03738 8.39459 8.72085 8.73760 10.05934 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.018363 B = 0.004788 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.401507 B = 5846.178989 C = 7072.822957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.461 3.539 4 O -0.511 6.511 5 C -0.106 4.106 6 C -0.057 4.057 7 C -0.054 4.054 8 C -0.232 4.232 9 C -0.002 4.002 10 Cl -0.125 7.125 11 C -0.157 4.157 12 C 0.118 3.882 13 C -0.458 4.458 14 H 0.082 0.918 15 C 0.076 3.924 16 N -0.786 5.786 17 Si 0.910 3.090 18 H -0.264 1.264 19 H -0.277 1.277 20 H -0.262 1.262 21 C -0.214 4.214 22 H 0.061 0.939 23 H 0.098 0.902 24 H 0.061 0.939 25 H 0.107 0.893 26 H 0.108 0.892 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.129 0.871 31 H 0.284 0.716 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.693 -6.210 1.708 10.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.280 6.280 3 C 0.304 3.696 4 O -0.398 6.398 5 C -0.143 4.143 6 C -0.095 4.095 7 C -0.055 4.055 8 C -0.252 4.252 9 C -0.028 4.028 10 Cl -0.097 7.097 11 C -0.177 4.177 12 C 0.115 3.885 13 C -0.487 4.487 14 H 0.100 0.900 15 C -0.144 4.144 16 N -0.410 5.410 17 Si 0.734 3.266 18 H -0.189 1.189 19 H -0.202 1.202 20 H -0.187 1.187 21 C -0.234 4.234 22 H 0.080 0.920 23 H 0.116 0.884 24 H 0.079 0.921 25 H 0.125 0.875 26 H 0.127 0.873 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.117 0.883 30 H 0.147 0.853 31 H 0.096 0.904 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.647 -5.743 1.910 10.555 hybrid contribution 0.453 0.033 -0.431 0.626 sum -8.194 -5.710 1.479 10.096 Atomic orbital electron populations 1.23215 0.76933 1.03372 1.02401 1.86543 1.23059 1.34059 1.84334 1.24215 0.92639 0.80995 0.71717 1.90650 1.67393 1.36366 1.45407 1.21501 0.85696 1.00868 1.06278 1.20274 0.93158 0.92790 1.03243 1.19033 0.92552 1.00753 0.93153 1.20040 0.91566 1.17063 0.96489 1.20681 0.91837 1.05587 0.84682 1.98257 1.79076 1.97373 1.34994 1.21275 1.00342 1.06454 0.89600 1.17455 0.90680 0.87788 0.92537 1.19547 0.99642 1.33755 0.95772 0.89992 1.25953 0.98425 0.92576 0.97402 1.69795 1.19647 1.19830 1.31735 0.86327 0.78992 0.79912 0.81333 1.18893 1.20229 1.18676 1.20934 0.94052 1.12933 0.95466 0.92046 0.88360 0.92073 0.87502 0.87338 0.90879 0.91155 0.88342 0.85349 0.90448 0.88319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.59 10.57 -39.27 -0.41 -5.00 16 3 C 0.46 6.61 7.96 36.00 0.29 6.90 16 4 O -0.51 -8.58 15.73 -18.75 -0.29 -8.88 16 5 C -0.11 -1.49 5.79 -27.89 -0.16 -1.65 16 6 C -0.06 -0.96 4.63 -27.88 -0.13 -1.08 16 7 C -0.05 -1.11 5.13 -104.71 -0.54 -1.65 16 8 C -0.23 -4.91 9.48 -39.25 -0.37 -5.28 16 9 C 0.00 -0.04 6.31 -39.57 -0.25 -0.29 16 10 Cl -0.13 -2.54 28.95 -51.86 -1.50 -4.04 16 11 C -0.16 -3.92 8.47 -38.84 -0.33 -4.25 16 12 C 0.12 2.97 5.57 -106.83 -0.60 2.38 16 13 C -0.46 -11.48 9.05 -37.74 -0.34 -11.82 16 14 H 0.08 1.95 7.91 -52.49 -0.41 1.53 16 15 C 0.08 1.82 5.14 -17.34 -0.09 1.73 16 16 N -0.79 -19.64 10.97 55.55 0.61 -19.03 16 17 Si 0.91 17.89 29.59 -169.99 -5.03 12.86 16 18 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 19 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 20 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 21 C -0.21 -4.82 9.44 -38.87 -0.37 -5.19 16 22 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 23 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.56 8.13 -51.93 -0.42 0.13 16 25 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 26 H 0.11 1.44 8.14 -51.92 -0.42 1.02 16 27 H 0.07 1.23 8.04 -51.93 -0.42 0.81 16 28 H 0.07 1.16 8.04 -51.93 -0.42 0.75 16 29 H 0.10 1.91 8.06 -52.49 -0.42 1.48 16 30 H 0.13 3.36 6.18 -52.49 -0.32 3.04 16 31 H 0.28 6.50 8.30 -40.82 -0.34 6.17 16 32 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 299.92 15.07 4.52 4.52 Total: -1.00 -27.27 299.92 -7.60 -34.87 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -3.67 Total: 3.51 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: -1.82 Total: -18.81 kcal Atomic # 7 Polarization: -19.64 SS G_CDS: 0.61 Total: -19.03 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.71 Total: -13.88 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.86 kcal Atomic # 17 Polarization: -2.54 SS G_CDS: -1.50 Total: -4.04 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.27 -7.60 -34.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396117047.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.864 kcal (2) G-P(sol) polarization free energy of solvation -27.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds