Wall clock time and date at job start Mon Mar 30 2020 07:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34227 * 117.00290 * 2 1 4 4 O 1.20828 * 119.99896 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00373 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47377 * 180.02562 * 5 3 2 7 7 C 1.50697 * 109.46987 * 180.02562 * 6 5 3 8 8 C 1.38638 * 119.75878 * 265.25496 * 7 6 5 9 9 C 1.37603 * 120.26523 * 180.30046 * 8 7 6 10 10 C 1.40731 * 119.76997 * 359.72302 * 9 8 7 11 11 C 1.41402 * 120.23511 * 180.02562 * 10 9 8 12 12 H 1.07995 * 119.99902 * 24.38186 * 11 10 9 13 13 C 1.39942 * 120.00052 * 204.37411 * 11 10 9 14 14 N 1.30829 * 119.99902 * 17.86558 * 13 11 10 15 15 Si 1.86796 * 120.00336 * 197.86037 * 13 11 10 16 16 H 1.48501 * 109.46964 * 90.00204 * 15 13 11 17 17 H 1.48497 * 109.47378 * 210.00154 * 15 13 11 18 18 H 1.48498 * 109.47041 * 330.00602 * 15 13 11 19 19 C 1.40671 * 119.52737 * 359.97438 * 10 9 8 20 20 C 1.37759 * 119.73355 * 0.02562 * 19 10 9 21 21 Cl 1.73604 * 119.88879 * 179.97438 * 20 19 10 22 22 H 1.09002 * 109.46845 * 59.99554 * 1 2 3 23 23 H 1.08996 * 109.47480 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46603 * 299.99824 * 1 2 3 25 25 H 1.09006 * 109.46946 * 60.00129 * 5 3 2 26 26 H 1.09001 * 109.47558 * 300.01135 * 5 3 2 27 27 H 1.08994 * 109.47094 * 60.00225 * 6 5 3 28 28 H 1.08998 * 109.46905 * 300.00193 * 6 5 3 29 29 H 1.08004 * 119.86609 * 359.97438 * 8 7 6 30 30 H 1.08003 * 120.11041 * 179.69906 * 9 8 7 31 31 H 0.97000 * 119.99707 * 180.02562 * 14 13 11 32 32 H 1.08004 * 120.13404 * 180.02562 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0002 2.7420 0.0011 7 6 5.5051 2.8208 0.0011 8 6 6.1871 2.9558 1.2005 9 6 7.5608 3.0349 1.2121 10 6 8.2746 2.9725 0.0008 11 6 9.6863 3.0524 0.0013 12 1 10.2428 2.7705 0.8828 13 6 10.3625 3.4965 -1.1407 14 7 9.7176 4.1585 -2.0667 15 14 12.1858 3.1444 -1.3427 16 1 12.3647 1.8479 -2.0444 17 1 12.8142 4.2289 -2.1389 18 1 12.8279 3.0761 -0.0055 19 6 7.5736 2.8291 -1.2104 20 6 6.1982 2.7519 -1.1987 21 17 5.3290 2.5756 -2.6911 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3632 0.5138 0.8900 25 1 3.9564 0.7805 -0.8892 26 1 3.9558 0.7807 0.8907 27 1 3.6102 3.2359 0.8910 28 1 3.6108 3.2363 -0.8889 29 1 5.6378 3.0043 2.1291 30 1 8.0894 3.1449 2.1475 31 1 10.1862 4.4660 -2.8583 32 1 8.1115 2.7798 -2.1456 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396119523.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:25 Heat of formation + Delta-G solvation = -108.762580 kcal Electronic energy + Delta-G solvation = -17438.910499 eV Core-core repulsion = 14388.814834 eV Total energy + Delta-G solvation = -3050.095666 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.48476 -39.72143 -37.61617 -37.12610 -36.01000 -34.27517 -31.22563 -31.01110 -28.92416 -27.33597 -24.78222 -23.04317 -22.14808 -21.27421 -19.33217 -18.66459 -17.65741 -17.50386 -17.26405 -16.18567 -16.02479 -15.72458 -14.86094 -14.68038 -14.34963 -14.19105 -14.07555 -13.77106 -13.24260 -13.14005 -12.91701 -12.78364 -12.65369 -12.29214 -12.03711 -11.97822 -11.87350 -11.77458 -11.57424 -11.48155 -11.20100 -10.98669 -9.31008 -9.23367 -8.66566 -6.37785 0.78374 0.99432 1.17880 1.40524 1.48824 1.53515 1.56053 1.83355 2.20527 2.65568 3.60380 3.80961 4.09478 4.20005 4.31637 4.33815 4.42305 4.53033 4.70514 4.72951 4.77712 4.97001 5.09015 5.17773 5.26513 5.35090 5.39045 5.47840 5.80154 5.98766 6.06899 6.26440 6.55936 6.73844 6.88310 6.91391 8.29109 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.038010 B = 0.004344 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.469388 B = 6443.420257 C = 6804.900919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.366 6.366 3 C 0.468 3.532 4 O -0.538 6.538 5 C -0.103 4.103 6 C -0.038 4.038 7 C -0.204 4.204 8 C -0.069 4.069 9 C -0.232 4.232 10 C 0.088 3.912 11 C -0.491 4.491 12 H 0.083 0.917 13 C 0.036 3.964 14 N -0.819 5.819 15 Si 0.982 3.018 16 H -0.263 1.263 17 H -0.270 1.270 18 H -0.255 1.255 19 C -0.182 4.182 20 C -0.004 4.004 21 Cl -0.104 7.104 22 H 0.059 0.941 23 H 0.132 0.868 24 H 0.063 0.937 25 H 0.104 0.896 26 H 0.123 0.877 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.134 0.866 30 H 0.109 0.891 31 H 0.289 0.711 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.459 -6.927 2.358 11.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C 0.313 3.687 4 O -0.428 6.428 5 C -0.140 4.140 6 C -0.075 4.075 7 C -0.206 4.206 8 C -0.088 4.088 9 C -0.252 4.252 10 C 0.085 3.915 11 C -0.520 4.520 12 H 0.102 0.898 13 C -0.180 4.180 14 N -0.445 5.445 15 Si 0.803 3.197 16 H -0.188 1.188 17 H -0.195 1.195 18 H -0.179 1.179 19 C -0.202 4.202 20 C -0.030 4.030 21 Cl -0.075 7.075 22 H 0.078 0.922 23 H 0.150 0.850 24 H 0.082 0.918 25 H 0.122 0.878 26 H 0.141 0.859 27 H 0.093 0.907 28 H 0.078 0.922 29 H 0.151 0.849 30 H 0.127 0.873 31 H 0.100 0.900 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.747 -6.523 2.003 11.899 hybrid contribution 0.585 0.239 -0.556 0.842 sum -9.162 -6.284 1.447 11.204 Atomic orbital electron populations 1.23548 0.74954 1.05674 1.02471 1.86523 1.24996 1.32911 1.83781 1.24132 0.92561 0.81090 0.70944 1.90635 1.67952 1.37318 1.46918 1.21461 0.85907 0.99808 1.06820 1.19968 0.90598 0.94140 1.02827 1.19105 0.94695 1.15565 0.91189 1.20715 0.93557 0.98027 0.96454 1.21284 0.94250 1.12330 0.97301 1.17855 0.93993 0.88418 0.91212 1.19885 0.91962 1.40047 1.00126 0.89842 1.26781 1.05618 0.91466 0.94164 1.69870 1.40770 1.25185 1.08638 0.85196 0.76006 0.78927 0.79609 1.18778 1.19520 1.17893 1.21156 0.91230 1.08415 0.99433 1.20753 0.91846 1.05036 0.85380 1.98249 1.77225 1.96301 1.35737 0.92238 0.84973 0.91821 0.87753 0.85875 0.90696 0.92241 0.84858 0.87312 0.89992 0.87314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 113.37 1.20 1.65 16 2 O -0.37 -8.90 10.57 -51.39 -0.54 -9.45 16 3 C 0.47 13.36 7.96 71.23 0.57 13.92 16 4 O -0.54 -18.12 15.73 21.96 0.35 -17.77 16 5 C -0.10 -2.90 5.79 29.85 0.17 -2.73 16 6 C -0.04 -1.27 4.13 29.85 0.12 -1.15 16 7 C -0.20 -8.13 5.16 -19.65 -0.10 -8.23 16 8 C -0.07 -2.74 9.65 22.22 0.21 -2.52 16 9 C -0.23 -10.48 9.79 22.73 0.22 -10.26 16 10 C 0.09 4.51 5.57 -21.30 -0.12 4.39 16 11 C -0.49 -25.22 9.05 23.46 0.21 -25.01 16 12 H 0.08 4.08 7.91 -2.91 -0.02 4.06 16 13 C 0.04 1.73 5.14 85.26 0.44 2.17 16 14 N -0.82 -41.92 10.96 21.83 0.24 -41.68 16 15 Si 0.98 36.89 29.60 68.60 2.03 38.92 16 16 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 17 H -0.27 -9.77 7.11 99.48 0.71 -9.07 16 18 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 19 C -0.18 -9.25 8.47 22.75 0.19 -9.06 16 20 C 0.00 -0.17 6.30 22.27 0.14 -0.03 16 21 Cl -0.10 -4.08 27.09 -2.72 -0.07 -4.16 16 22 H 0.06 1.05 8.13 -2.39 -0.02 1.03 16 23 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.06 1.07 8.13 -2.39 -0.02 1.05 16 25 H 0.10 2.99 7.87 -2.38 -0.02 2.98 16 26 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 27 H 0.07 2.38 8.01 -2.39 -0.02 2.36 16 28 H 0.06 2.14 7.06 -2.39 -0.02 2.12 16 29 H 0.13 4.29 8.06 -2.91 -0.02 4.26 16 30 H 0.11 4.56 8.06 -2.91 -0.02 4.54 16 31 H 0.29 13.46 8.30 -92.71 -0.77 12.69 16 32 H 0.11 5.90 6.16 -2.91 -0.02 5.88 16 Total: -1.00 -58.64 296.80 6.39 -52.25 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 1.13 Total: 18.74 kcal Atomic # 6 Polarization: -40.11 SS G_CDS: 3.26 Total: -36.85 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: 0.24 Total: -41.68 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.20 Total: -27.22 kcal Atomic # 14 Polarization: 36.89 SS G_CDS: 2.03 Total: 38.92 kcal Atomic # 17 Polarization: -4.08 SS G_CDS: -0.07 Total: -4.16 kcal Total: -58.64 6.39 -52.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396119523.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.517 kcal (2) G-P(sol) polarization free energy of solvation -58.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds