Wall clock time and date at job start Mon Mar 30 2020 07:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34232 * 117.00267 * 2 1 4 4 O 1.20826 * 119.99630 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99995 * 179.97438 * 3 2 1 6 6 C 1.53003 * 109.46682 * 180.02562 * 5 3 2 7 7 C 1.50702 * 109.47057 * 180.02562 * 6 5 3 8 8 C 1.36625 * 120.12034 * 265.02524 * 7 6 5 9 9 C 1.38779 * 120.23372 * 179.97438 * 8 7 6 10 10 Cl 1.73597 * 119.76542 * 179.97438 * 9 8 7 11 11 C 1.38814 * 120.47422 * 359.97438 * 9 8 7 12 12 C 1.36598 * 120.23160 * 359.66624 * 11 9 8 13 13 C 1.40735 * 120.12074 * 84.99445 * 7 6 5 14 14 C 1.41350 * 120.22662 * 0.03278 * 13 7 6 15 15 H 1.07996 * 120.00463 * 26.29710 * 14 13 7 16 16 C 1.39938 * 119.99540 * 206.29859 * 14 13 7 17 17 N 1.30834 * 119.99916 * 16.47857 * 16 14 13 18 18 Si 1.86797 * 119.99849 * 196.47590 * 16 14 13 19 19 H 1.48502 * 109.47080 * 265.19027 * 18 16 14 20 20 H 1.48505 * 109.47039 * 25.18682 * 18 16 14 21 21 H 1.48499 * 109.47063 * 145.18497 * 18 16 14 22 22 H 1.08994 * 109.47211 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.46958 * 300.00215 * 1 2 3 24 24 H 1.09002 * 109.46999 * 60.00090 * 1 2 3 25 25 H 1.08999 * 109.47250 * 60.00233 * 5 3 2 26 26 H 1.09003 * 109.47386 * 299.99812 * 5 3 2 27 27 H 1.08999 * 109.47341 * 59.99979 * 6 5 3 28 28 H 1.08994 * 109.47058 * 299.99889 * 6 5 3 29 29 H 1.07995 * 119.88310 * 359.97312 * 8 7 6 30 30 H 1.07997 * 119.88714 * 179.97438 * 11 9 8 31 31 H 1.07999 * 120.12142 * 180.30595 * 12 11 9 32 32 H 0.96999 * 119.99872 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0001 2.7420 0.0011 7 6 5.5051 2.8209 0.0011 8 6 6.1845 2.9587 1.1784 9 6 7.5704 3.0311 1.1811 10 17 8.4212 3.2068 2.6840 11 6 8.2812 2.9640 -0.0093 12 6 7.6218 2.8189 -1.1968 13 6 6.2159 2.7523 -1.2117 14 6 5.5230 2.6098 -2.4355 15 1 4.5074 2.9657 -2.5257 16 6 6.1532 2.0075 -3.5302 17 7 7.2362 1.2956 -3.3512 18 14 5.4482 2.2201 -5.2469 19 1 4.5674 1.0680 -5.5664 20 1 4.6598 3.4772 -5.3060 21 1 6.5567 2.2842 -6.2328 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 3.9564 0.7805 -0.8891 26 1 3.9558 0.7809 0.8908 27 1 3.6101 3.2360 0.8910 28 1 3.6108 3.2363 -0.8889 29 1 5.6411 3.0116 2.1102 30 1 9.3595 3.0216 0.0038 31 1 8.1769 2.7619 -2.1215 32 1 7.6732 0.8784 -4.1101 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396123045.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:03 Heat of formation + Delta-G solvation = -96.166030 kcal Electronic energy + Delta-G solvation = -17760.378760 eV Core-core repulsion = 14710.829322 eV Total energy + Delta-G solvation = -3049.549438 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.15053 -38.13432 -36.28909 -35.43240 -33.76074 -33.13643 -29.62684 -29.42393 -27.46077 -25.44009 -23.84382 -21.21813 -20.62937 -19.51868 -17.44550 -17.21849 -16.35490 -16.20109 -15.61664 -14.90763 -14.43583 -13.90539 -13.49029 -13.34677 -12.79248 -12.51797 -12.29016 -12.01351 -11.95264 -11.68097 -11.41497 -11.27477 -11.19191 -10.86222 -10.64292 -10.48316 -10.23730 -10.17835 -9.99521 -9.71099 -9.48238 -9.22407 -7.65736 -7.42022 -6.94654 -4.53991 2.52952 2.54906 2.73000 2.98962 3.00646 3.06943 3.10352 3.43403 3.80273 4.41938 5.13857 5.16456 5.22516 5.34674 5.54915 5.66886 5.84185 6.03404 6.08710 6.23684 6.40743 6.59409 6.63903 6.78582 6.92175 6.96722 7.10595 7.40531 7.52605 7.70987 7.82216 8.04504 8.06574 8.39691 8.67738 8.71161 9.98634 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.011040 B = 0.008006 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.687373 B = 3496.679125 C = 5695.471878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.462 3.538 4 O -0.514 6.514 5 C -0.105 4.105 6 C -0.034 4.034 7 C -0.193 4.193 8 C -0.067 4.067 9 C -0.152 4.152 10 Cl -0.135 7.135 11 C -0.088 4.088 12 C -0.155 4.155 13 C 0.122 3.878 14 C -0.452 4.452 15 H 0.085 0.915 16 C 0.077 3.923 17 N -0.784 5.784 18 Si 0.905 3.095 19 H -0.269 1.269 20 H -0.259 1.259 21 H -0.274 1.274 22 H 0.096 0.904 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.116 0.884 26 H 0.098 0.902 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.125 0.875 32 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.687 -2.427 2.412 6.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.281 6.281 3 C 0.306 3.694 4 O -0.402 6.402 5 C -0.143 4.143 6 C -0.072 4.072 7 C -0.195 4.195 8 C -0.086 4.086 9 C -0.179 4.179 10 Cl -0.107 7.107 11 C -0.107 4.107 12 C -0.175 4.175 13 C 0.119 3.881 14 C -0.480 4.480 15 H 0.103 0.897 16 C -0.143 4.143 17 N -0.408 5.408 18 Si 0.729 3.271 19 H -0.194 1.194 20 H -0.182 1.182 21 H -0.199 1.199 22 H 0.114 0.886 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.134 0.866 26 H 0.116 0.884 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.143 0.857 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.677 -2.275 2.403 6.570 hybrid contribution -0.298 -0.027 -0.665 0.730 sum -5.974 -2.301 1.737 6.634 Atomic orbital electron populations 1.23174 0.77376 1.03141 1.02244 1.86560 1.22734 1.34380 1.84429 1.24414 0.92845 0.80807 0.71366 1.90620 1.67472 1.36379 1.45751 1.21533 0.84913 1.01674 1.06153 1.19929 0.92771 0.92288 1.02177 1.19193 0.93490 1.14298 0.92534 1.20038 0.91627 1.00040 0.96935 1.20196 0.91565 1.21830 0.84313 1.98221 1.78943 1.97251 1.36298 1.20347 0.97977 1.00770 0.91640 1.21032 0.94799 1.05355 0.96286 1.17519 0.91761 0.87147 0.91639 1.19665 1.00721 1.33212 0.94438 0.89713 1.25942 0.94203 0.92730 1.01400 1.69803 1.16195 1.21277 1.33567 0.86335 0.79666 0.80130 0.81008 1.19397 1.18228 1.19874 0.88570 0.92247 0.92149 0.86612 0.88354 0.92614 0.90742 0.88327 0.88456 0.85729 0.90521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 101.05 1.07 1.46 16 2 O -0.36 -5.50 10.56 -39.26 -0.41 -5.92 16 3 C 0.46 7.87 7.96 36.01 0.29 8.15 16 4 O -0.51 -9.82 15.73 -18.75 -0.29 -10.11 16 5 C -0.11 -1.83 5.79 -27.88 -0.16 -1.99 16 6 C -0.03 -0.66 4.15 -27.88 -0.12 -0.78 16 7 C -0.19 -4.22 5.16 -104.26 -0.54 -4.75 16 8 C -0.07 -1.43 9.39 -39.96 -0.38 -1.80 16 9 C -0.15 -3.28 6.34 -39.17 -0.25 -3.53 16 10 Cl -0.14 -2.57 28.94 -51.86 -1.50 -4.07 16 11 C -0.09 -1.97 9.76 -39.96 -0.39 -2.36 16 12 C -0.16 -3.72 8.64 -39.22 -0.34 -4.06 16 13 C 0.12 2.92 5.56 -106.82 -0.59 2.33 16 14 C -0.45 -10.70 8.28 -37.76 -0.31 -11.01 16 15 H 0.08 1.96 6.37 -52.49 -0.33 1.62 16 16 C 0.08 1.75 5.16 -17.34 -0.09 1.66 16 17 N -0.78 -18.51 10.97 55.55 0.61 -17.90 16 18 Si 0.90 17.41 29.59 -169.99 -5.03 12.38 16 19 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 20 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 21 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 22 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 24 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 25 H 0.12 2.13 7.97 -51.93 -0.41 1.71 16 26 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 27 H 0.06 1.02 8.01 -51.93 -0.42 0.61 16 28 H 0.07 1.52 6.44 -51.93 -0.33 1.18 16 29 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 30 H 0.10 2.01 8.06 -52.49 -0.42 1.59 16 31 H 0.12 3.07 6.22 -52.49 -0.33 2.75 16 32 H 0.28 6.13 8.30 -40.82 -0.34 5.79 16 LS Contribution 295.85 15.07 4.46 4.46 Total: -1.00 -25.81 295.85 -7.48 -33.29 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -3.50 Total: 4.56 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -1.81 Total: -16.69 kcal Atomic # 7 Polarization: -18.51 SS G_CDS: 0.61 Total: -17.90 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.71 Total: -16.03 kcal Atomic # 14 Polarization: 17.41 SS G_CDS: -5.03 Total: 12.38 kcal Atomic # 17 Polarization: -2.57 SS G_CDS: -1.50 Total: -4.07 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -25.81 -7.48 -33.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396123045.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.877 kcal (2) G-P(sol) polarization free energy of solvation -25.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds