Wall clock time and date at job start Mon Mar 30 2020 08:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47263 * 2 1 4 4 S 1.81397 * 109.47029 * 179.97438 * 3 2 1 5 5 O 1.42102 * 108.57934 * 65.51313 * 4 3 2 6 6 O 1.42098 * 108.58101 * 294.48542 * 4 3 2 7 7 C 1.81407 * 101.92187 * 179.97438 * 4 3 2 8 8 C 1.50701 * 109.47414 * 179.97438 * 7 4 3 9 9 C 1.38635 * 119.74919 * 270.30297 * 8 7 4 10 10 C 1.37619 * 120.24315 * 180.30050 * 9 8 7 11 11 C 1.40711 * 119.74798 * 359.42278 * 10 9 8 12 12 C 1.41396 * 120.24787 * 180.29782 * 11 10 9 13 13 H 1.08005 * 119.99505 * 335.28837 * 12 11 10 14 14 C 1.39942 * 120.00083 * 155.28075 * 12 11 10 15 15 N 1.30817 * 120.00502 * 342.23482 * 14 12 11 16 16 Si 1.86807 * 119.99811 * 162.22853 * 14 12 11 17 17 H 1.48505 * 109.46906 * 94.66663 * 16 14 12 18 18 H 1.48499 * 109.47220 * 214.66572 * 16 14 12 19 19 H 1.48500 * 109.47278 * 334.66810 * 16 14 12 20 20 C 1.40719 * 119.50966 * 0.27391 * 11 10 9 21 21 C 1.37612 * 119.74521 * 0.02562 * 20 11 10 22 22 H 1.09000 * 109.47356 * 300.00531 * 1 2 3 23 23 H 1.09007 * 109.46736 * 60.00420 * 1 2 3 24 24 H 1.08997 * 109.47277 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.46984 * 239.99397 * 2 1 3 26 26 H 1.09007 * 109.46736 * 119.99580 * 2 1 3 27 27 H 1.09000 * 109.47368 * 59.99476 * 3 2 1 28 28 H 1.08999 * 109.47256 * 299.99562 * 3 2 1 29 29 H 1.09001 * 109.46918 * 60.00066 * 7 4 3 30 30 H 1.09003 * 109.46987 * 300.00427 * 7 4 3 31 31 H 1.07995 * 119.87715 * 359.97438 * 9 8 7 32 32 H 1.07999 * 120.12174 * 179.69437 * 10 9 8 33 33 H 0.97001 * 120.00527 * 179.97438 * 15 14 12 34 34 H 1.08003 * 120.12678 * 180.02562 * 20 11 10 35 35 H 1.08006 * 119.87565 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 16 3.8540 1.4424 0.0008 5 8 4.3073 0.8839 -1.2248 6 8 4.3063 0.8843 1.2268 7 6 4.2288 3.2173 -0.0001 8 6 5.7228 3.4153 0.0010 9 6 6.4045 3.5002 1.2052 10 6 7.7679 3.6871 1.2181 11 6 8.4715 3.7799 0.0031 12 6 9.8732 3.9657 0.0040 13 1 10.3564 4.4245 0.8540 14 6 10.6342 3.5549 -1.0962 15 7 10.1349 2.7052 -1.9564 16 14 12.3632 4.2201 -1.3366 17 1 13.3440 3.2747 -0.7454 18 1 12.6370 4.3741 -2.7879 19 1 12.4831 5.5404 -0.6674 20 6 7.7698 3.6860 -1.2131 21 6 6.4057 3.5053 -1.2021 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 1.6767 1.9563 0.8899 28 1 1.6768 1.9563 -0.8900 29 1 3.8008 3.6794 0.8894 30 1 3.8014 3.6784 -0.8906 31 1 5.8630 3.4246 2.1365 32 1 8.2963 3.7579 2.1573 33 1 10.6623 2.4207 -2.7192 34 1 8.2999 3.7555 -2.1515 35 1 5.8650 3.4333 -2.1343 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399032084.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:05:52 Heat of formation + Delta-G solvation = -72.592382 kcal Electronic energy + Delta-G solvation = -17931.387575 eV Core-core repulsion = 15020.737167 eV Total energy + Delta-G solvation = -2910.650407 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -37.75134 -36.40415 -35.49199 -34.85138 -34.14048 -31.50124 -29.40743 -28.14238 -27.48723 -24.24303 -21.94765 -21.12805 -20.18539 -18.37793 -17.41598 -16.43727 -16.03034 -15.71875 -15.35432 -14.83775 -14.33924 -13.87105 -13.80039 -13.59741 -12.72046 -12.60780 -12.57322 -12.14181 -12.04263 -11.84718 -11.57834 -11.49853 -11.43228 -11.32699 -11.11124 -11.03555 -10.98093 -10.62850 -10.36615 -10.10404 -9.71581 -9.50342 -9.19790 -7.57643 -7.41139 -6.89415 -4.46358 0.36075 2.65237 2.99511 3.02077 3.04698 3.11266 3.30285 3.83941 4.06139 4.32414 4.48753 4.63515 4.75140 5.00330 5.14482 5.32757 5.42709 5.44579 5.52374 5.57608 5.78631 5.84058 5.97440 6.06174 6.23938 6.29707 6.86367 6.94138 7.13256 7.21581 7.49043 7.69957 7.92796 7.93585 8.15542 8.50291 8.74439 8.82939 10.03892 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.047782 B = 0.004173 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.858856 B = 6707.392890 C = 6918.986695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.116 4.116 3 C -0.630 4.630 4 S 2.379 3.621 5 O -0.941 6.941 6 O -0.944 6.944 7 C -0.502 4.502 8 C -0.233 4.233 9 C -0.066 4.066 10 C -0.226 4.226 11 C 0.118 3.882 12 C -0.448 4.448 13 H 0.083 0.917 14 C 0.073 3.927 15 N -0.778 5.778 16 Si 0.912 3.088 17 H -0.269 1.269 18 H -0.274 1.274 19 H -0.259 1.259 20 C -0.167 4.167 21 C -0.078 4.078 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.124 0.876 28 H 0.125 0.875 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.285 0.715 34 H 0.122 0.878 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.624 0.083 1.100 12.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.155 4.155 3 C -0.755 4.755 4 S 2.566 3.434 5 O -0.938 6.938 6 O -0.941 6.941 7 C -0.632 4.632 8 C -0.238 4.238 9 C -0.085 4.085 10 C -0.246 4.246 11 C 0.114 3.886 12 C -0.477 4.477 13 H 0.101 0.899 14 C -0.147 4.147 15 N -0.402 5.402 16 Si 0.736 3.264 17 H -0.194 1.194 18 H -0.199 1.199 19 H -0.183 1.183 20 C -0.187 4.187 21 C -0.098 4.098 22 H 0.075 0.925 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.143 0.857 28 H 0.143 0.857 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.096 0.904 34 H 0.140 0.860 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.130 -0.862 0.882 12.193 hybrid contribution 0.083 0.846 -0.186 0.870 sum -12.047 -0.016 0.696 12.067 Atomic orbital electron populations 1.21734 0.94518 1.01956 1.02083 1.21231 0.97842 0.92691 1.03694 1.30539 1.29136 1.05279 1.10553 1.10072 0.77024 0.80669 0.75592 1.93530 1.78129 1.76633 1.45546 1.93515 1.78263 1.76692 1.45626 1.28687 1.04029 1.20902 1.09609 1.18099 0.89063 1.21960 0.94659 1.20467 0.94668 0.98154 0.95229 1.20972 0.93470 1.12910 0.97248 1.17736 0.93272 0.86553 0.91016 1.19741 0.92000 1.33832 1.02102 0.89919 1.26024 1.01130 0.92835 0.94718 1.69829 1.38523 1.21174 1.10656 0.86237 0.81146 0.80510 0.78545 1.19367 1.19854 1.18263 1.21308 0.92075 1.06472 0.98871 1.20604 0.95067 0.98993 0.95123 0.92465 0.92446 0.92228 0.90418 0.90447 0.85719 0.85685 0.86214 0.86144 0.88629 0.88361 0.90383 0.86025 0.88670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.91 37.16 0.37 -0.89 16 2 C -0.12 -1.30 5.94 -26.73 -0.16 -1.46 16 3 C -0.63 -6.92 5.81 37.16 0.22 -6.71 16 4 S 2.38 39.41 4.70 -107.50 -0.51 38.91 16 5 O -0.94 -19.30 18.10 -57.83 -1.05 -20.34 16 6 O -0.94 -18.98 18.10 -57.83 -1.05 -20.02 16 7 C -0.50 -7.97 5.92 36.01 0.21 -7.76 16 8 C -0.23 -5.07 5.16 -104.33 -0.54 -5.61 16 9 C -0.07 -1.49 9.67 -39.66 -0.38 -1.87 16 10 C -0.23 -5.56 9.80 -38.87 -0.38 -5.94 16 11 C 0.12 3.12 5.57 -106.82 -0.60 2.52 16 12 C -0.45 -11.60 9.05 -37.74 -0.34 -11.94 16 13 H 0.08 2.03 7.91 -52.48 -0.41 1.61 16 14 C 0.07 1.79 5.14 -17.35 -0.09 1.70 16 15 N -0.78 -19.88 10.97 55.55 0.61 -19.27 16 16 Si 0.91 18.07 29.59 -169.99 -5.03 13.04 16 17 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 18 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 19 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 20 C -0.17 -4.35 8.70 -38.87 -0.34 -4.69 16 21 C -0.08 -1.85 9.67 -39.66 -0.38 -2.23 16 22 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.12 1.07 8.14 -51.92 -0.42 0.65 16 28 H 0.12 1.09 8.14 -51.92 -0.42 0.67 16 29 H 0.12 1.51 8.08 -51.92 -0.42 1.09 16 30 H 0.12 1.55 8.08 -51.92 -0.42 1.13 16 31 H 0.10 1.90 8.06 -52.49 -0.42 1.47 16 32 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 33 H 0.29 6.57 8.30 -40.82 -0.34 6.23 16 34 H 0.12 3.21 6.18 -52.48 -0.32 2.89 16 35 H 0.10 2.02 8.06 -52.48 -0.42 1.60 16 LS Contribution 312.82 15.07 4.71 4.71 Total: -1.00 -32.46 312.82 -9.66 -42.12 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -4.94 Total: 5.74 kcal Atomic # 6 Polarization: -42.48 SS G_CDS: -2.41 Total: -44.89 kcal Atomic # 7 Polarization: -19.88 SS G_CDS: 0.61 Total: -19.27 kcal Atomic # 8 Polarization: -38.27 SS G_CDS: -2.09 Total: -40.36 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Atomic # 16 Polarization: 39.41 SS G_CDS: -0.51 Total: 38.91 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.46 -9.66 -42.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399032084.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.475 kcal (2) G-P(sol) polarization free energy of solvation -32.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds