Wall clock time and date at job start Mon Mar 30 2020 08:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86795 * 119.99932 * 2 1 4 4 H 1.48493 * 109.47422 * 270.00236 * 3 2 1 5 5 H 1.48504 * 109.47253 * 30.00206 * 3 2 1 6 6 H 1.48497 * 109.47225 * 150.00001 * 3 2 1 7 7 C 1.37870 * 120.00079 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00097 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00370 * 179.97438 * 7 2 1 10 10 S 1.81392 * 109.47586 * 180.02562 * 9 7 2 11 11 C 1.81400 * 103.00446 * 180.02562 * 10 9 7 12 12 C 1.50695 * 109.47394 * 179.97438 * 11 10 9 13 13 N 1.31127 * 126.54893 * 90.25043 * 12 11 10 14 14 C 1.34503 * 105.61268 * 180.12089 * 13 12 11 15 15 C 1.50704 * 126.28664 * 179.90344 * 14 13 12 16 16 C 1.54887 * 110.48381 * 124.93780 * 15 14 13 17 17 C 1.54893 * 102.74533 * 156.62255 * 16 15 14 18 18 C 1.54266 * 104.19500 * 322.05712 * 17 16 15 19 19 C 1.53872 * 106.60044 * 23.61099 * 18 17 16 20 20 N 1.29940 * 107.42238 * 359.64275 * 14 13 12 21 21 O 1.21304 * 110.25492 * 0.22130 * 20 14 13 22 22 H 0.96996 * 119.99888 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.46985 * 59.99705 * 9 7 2 24 24 H 1.09004 * 109.47409 * 300.00356 * 9 7 2 25 25 H 1.09003 * 109.47192 * 59.99451 * 11 10 9 26 26 H 1.09004 * 109.46650 * 300.00110 * 11 10 9 27 27 H 1.09001 * 110.53750 * 2.32590 * 15 14 13 28 28 H 1.09001 * 110.75744 * 274.93157 * 16 15 14 29 29 H 1.09000 * 110.75698 * 38.30975 * 16 15 14 30 30 H 1.09002 * 110.48578 * 203.38190 * 17 16 15 31 31 H 1.09001 * 110.49013 * 80.73631 * 17 16 15 32 32 H 1.09002 * 110.02957 * 264.32709 * 18 17 16 33 33 H 1.09000 * 110.07144 * 142.92082 * 18 17 16 34 34 H 1.09003 * 110.03622 * 240.71485 * 19 18 17 35 35 H 1.09005 * 110.03465 * 119.28158 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 16 4.1162 -2.9042 -0.0025 11 6 5.9187 -2.6999 -0.0023 12 6 6.5779 -4.0550 -0.0027 13 7 6.9238 -4.7547 -1.0564 14 6 7.4689 -5.8867 -0.5761 15 6 8.0237 -7.0256 -1.3924 16 6 9.4872 -7.3238 -0.9824 17 6 9.6708 -8.7985 -1.4192 18 6 8.3158 -9.4607 -1.0946 19 6 7.2685 -8.3335 -1.0776 20 7 7.4345 -5.8153 0.7208 21 8 6.9265 -4.7708 1.0706 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6804 0.8888 24 1 3.8746 -0.6800 -0.8911 25 1 6.2218 -2.1490 0.8881 26 1 6.2218 -2.1476 -0.8918 27 1 7.9645 -6.7977 -2.4567 28 1 10.1787 -6.6734 -1.5181 29 1 9.6150 -7.2214 0.0953 30 1 10.4716 -9.2686 -0.8484 31 1 9.8777 -8.8569 -2.4878 32 1 8.3606 -9.9435 -0.1184 33 1 8.0639 -10.1928 -1.8618 34 1 6.8050 -8.2692 -0.0931 35 1 6.5088 -8.5180 -1.8371 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413017650.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:17:19 Heat of formation + Delta-G solvation = 47.673168 kcal Electronic energy + Delta-G solvation = -17301.789482 eV Core-core repulsion = 14428.646932 eV Total energy + Delta-G solvation = -2873.142550 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.53668 -38.58659 -35.65917 -33.44602 -33.12821 -29.65271 -29.39105 -29.02987 -28.61813 -23.87832 -23.08184 -22.39215 -20.77656 -19.93546 -18.07369 -17.70736 -16.99904 -16.08147 -15.78805 -15.55612 -14.74056 -14.26689 -13.97353 -13.73790 -13.70415 -13.39220 -12.71419 -12.44675 -12.41617 -12.18629 -11.98137 -11.52901 -11.43063 -11.29143 -11.17089 -10.89949 -10.88028 -10.74462 -10.66139 -10.28950 -9.88247 -9.60177 -9.16066 -8.78833 -7.03955 -6.25078 -4.28925 0.97017 1.96365 2.54445 2.82062 3.16373 3.23279 3.23784 3.39826 3.53766 3.96178 4.24065 4.30469 4.38823 4.54700 4.89157 5.05285 5.06062 5.12588 5.17311 5.19458 5.32718 5.34427 5.43517 5.55723 5.61497 5.68573 5.82424 5.86837 5.98964 6.03226 6.06235 6.43442 6.55550 7.31161 8.19710 8.21337 8.76624 9.29090 10.86788 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.051819 B = 0.003259 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.216657 B = 8588.580097 C = 8817.379582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.082 3.918 3 Si 0.879 3.121 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.518 4.518 8 H 0.085 0.915 9 C 0.046 3.954 10 S -0.225 6.225 11 C -0.024 4.024 12 C 0.214 3.786 13 N -0.473 5.473 14 C 0.178 3.822 15 C -0.002 4.002 16 C -0.116 4.116 17 C -0.122 4.122 18 C -0.122 4.122 19 C -0.117 4.117 20 N -0.384 5.384 21 O 0.081 5.919 22 H 0.269 0.731 23 H 0.041 0.959 24 H 0.036 0.964 25 H 0.113 0.887 26 H 0.121 0.879 27 H 0.106 0.894 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.230 -12.360 -1.922 22.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.123 4.123 3 Si 0.705 3.295 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.103 0.897 9 C -0.101 4.101 10 S 0.000 6.000 11 C -0.173 4.173 12 C -0.007 4.007 13 N -0.207 5.207 14 C -0.095 4.095 15 C -0.022 4.022 16 C -0.154 4.154 17 C -0.160 4.160 18 C -0.160 4.160 19 C -0.156 4.156 20 N -0.092 5.092 21 O 0.023 5.977 22 H 0.079 0.921 23 H 0.059 0.941 24 H 0.054 0.946 25 H 0.132 0.868 26 H 0.139 0.861 27 H 0.124 0.876 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 18.852 -13.886 -1.824 23.485 hybrid contribution 0.802 2.285 0.049 2.422 sum 19.654 -11.602 -1.775 22.892 Atomic orbital electron populations 1.69860 1.06184 1.27458 1.49028 1.24839 0.94767 0.98730 0.93993 0.86797 0.80296 0.83491 0.78887 1.19779 1.20725 1.18958 1.20396 0.86606 0.95445 1.53286 0.89737 1.21543 1.01335 0.87585 0.99682 1.87277 0.95261 1.19525 1.97982 1.21749 0.99395 0.88144 1.08012 1.27773 0.95201 0.96921 0.80768 1.71937 1.16337 1.03944 1.28513 1.25662 0.99458 0.95980 0.88405 1.20421 0.95017 0.88529 0.98271 1.22598 0.94027 0.96801 1.01999 1.22344 0.97450 0.94797 1.01401 1.22118 0.94365 0.97526 1.01965 1.22229 0.98115 0.92488 1.02751 1.74537 1.17084 1.01879 1.15657 1.85312 1.55217 1.21656 1.35529 0.92063 0.94097 0.94557 0.86849 0.86103 0.87605 0.90967 0.90669 0.91233 0.91202 0.91524 0.91415 0.91138 0.90847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.24 13.96 55.43 0.77 -25.46 16 2 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 3 Si 0.88 20.08 27.47 -169.99 -4.67 15.41 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.26 -5.68 6.54 56.52 0.37 -5.31 16 7 C -0.52 -14.26 9.68 -34.44 -0.33 -14.60 16 8 H 0.08 2.58 7.96 -52.48 -0.42 2.16 16 9 C 0.05 1.04 4.77 36.00 0.17 1.22 16 10 S -0.23 -4.53 21.64 -107.50 -2.33 -6.85 16 11 C -0.02 -0.36 6.57 36.00 0.24 -0.12 16 12 C 0.21 3.34 7.77 -13.06 -0.10 3.24 16 13 N -0.47 -7.59 11.55 -9.87 -0.11 -7.71 16 14 C 0.18 2.58 6.73 -156.37 -1.05 1.53 16 15 C 0.00 -0.03 3.39 -90.11 -0.31 -0.33 16 16 C -0.12 -1.05 6.32 -24.74 -0.16 -1.21 16 17 C -0.12 -0.87 6.83 -25.07 -0.17 -1.04 16 18 C -0.12 -0.94 6.80 -25.61 -0.17 -1.11 16 19 C -0.12 -1.17 6.36 -25.61 -0.16 -1.33 16 20 N -0.38 -5.90 11.84 30.90 0.37 -5.53 16 21 O 0.08 1.28 11.31 18.11 0.20 1.48 16 22 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 23 H 0.04 0.88 7.20 -51.92 -0.37 0.51 16 24 H 0.04 0.78 7.57 -51.92 -0.39 0.39 16 25 H 0.11 1.40 8.14 -51.92 -0.42 0.98 16 26 H 0.12 1.61 8.14 -51.92 -0.42 1.19 16 27 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.77 7.89 -51.93 -0.41 0.36 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.82 7.72 -51.93 -0.40 0.42 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 309.14 15.07 4.66 4.66 Total: -1.00 -30.14 309.14 -8.22 -38.36 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -4.97 Total: -2.75 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -2.15 Total: -11.60 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 1.03 Total: -38.70 kcal Atomic # 8 Polarization: 1.28 SS G_CDS: 0.20 Total: 1.48 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -4.67 Total: 15.41 kcal Atomic # 16 Polarization: -4.53 SS G_CDS: -2.33 Total: -6.85 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.14 -8.22 -38.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413017650.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.033 kcal (2) G-P(sol) polarization free energy of solvation -30.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds