Wall clock time and date at job start Mon Mar 30 2020 08:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86795 * 119.99932 * 2 1 4 4 H 1.48493 * 109.47422 * 270.00236 * 3 2 1 5 5 H 1.48504 * 109.47253 * 30.00206 * 3 2 1 6 6 H 1.48497 * 109.47225 * 150.00001 * 3 2 1 7 7 C 1.37870 * 120.00079 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00097 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00370 * 179.97438 * 7 2 1 10 10 S 1.81392 * 109.47586 * 180.02562 * 9 7 2 11 11 C 1.81400 * 103.00446 * 180.02562 * 10 9 7 12 12 C 1.50695 * 109.47394 * 179.97438 * 11 10 9 13 13 N 1.31127 * 126.54893 * 90.25043 * 12 11 10 14 14 C 1.34503 * 105.61268 * 180.12089 * 13 12 11 15 15 C 1.50704 * 126.28664 * 179.90344 * 14 13 12 16 16 C 1.54887 * 110.48381 * 124.93780 * 15 14 13 17 17 C 1.54893 * 102.74533 * 156.62255 * 16 15 14 18 18 C 1.54266 * 104.19500 * 322.05712 * 17 16 15 19 19 C 1.53872 * 106.60044 * 23.61099 * 18 17 16 20 20 N 1.29940 * 107.42238 * 359.64275 * 14 13 12 21 21 O 1.21304 * 110.25492 * 0.22130 * 20 14 13 22 22 H 0.96996 * 119.99888 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.46985 * 59.99705 * 9 7 2 24 24 H 1.09004 * 109.47409 * 300.00356 * 9 7 2 25 25 H 1.09003 * 109.47192 * 59.99451 * 11 10 9 26 26 H 1.09004 * 109.46650 * 300.00110 * 11 10 9 27 27 H 1.09001 * 110.53750 * 2.32590 * 15 14 13 28 28 H 1.09001 * 110.75744 * 274.93157 * 16 15 14 29 29 H 1.09000 * 110.75698 * 38.30975 * 16 15 14 30 30 H 1.09002 * 110.48578 * 203.38190 * 17 16 15 31 31 H 1.09001 * 110.49013 * 80.73631 * 17 16 15 32 32 H 1.09002 * 110.02957 * 264.32709 * 18 17 16 33 33 H 1.09000 * 110.07144 * 142.92082 * 18 17 16 34 34 H 1.09003 * 110.03622 * 240.71485 * 19 18 17 35 35 H 1.09005 * 110.03465 * 119.28158 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 16 4.1162 -2.9042 -0.0025 11 6 5.9187 -2.6999 -0.0023 12 6 6.5779 -4.0550 -0.0027 13 7 6.9238 -4.7547 -1.0564 14 6 7.4689 -5.8867 -0.5761 15 6 8.0237 -7.0256 -1.3924 16 6 9.4872 -7.3238 -0.9824 17 6 9.6708 -8.7985 -1.4192 18 6 8.3158 -9.4607 -1.0946 19 6 7.2685 -8.3335 -1.0776 20 7 7.4345 -5.8153 0.7208 21 8 6.9265 -4.7708 1.0706 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6804 0.8888 24 1 3.8746 -0.6800 -0.8911 25 1 6.2218 -2.1490 0.8881 26 1 6.2218 -2.1476 -0.8918 27 1 7.9645 -6.7977 -2.4567 28 1 10.1787 -6.6734 -1.5181 29 1 9.6150 -7.2214 0.0953 30 1 10.4716 -9.2686 -0.8484 31 1 9.8777 -8.8569 -2.4878 32 1 8.3606 -9.9435 -0.1184 33 1 8.0639 -10.1928 -1.8618 34 1 6.8050 -8.2692 -0.0931 35 1 6.5088 -8.5180 -1.8371 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413017650.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:17:18 Heat of formation + Delta-G solvation = 28.707840 kcal Electronic energy + Delta-G solvation = -17302.611880 eV Core-core repulsion = 14428.646932 eV Total energy + Delta-G solvation = -2873.964949 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.72451 -39.36440 -36.80620 -35.19479 -34.58100 -31.48431 -30.46208 -29.73247 -29.72033 -25.05976 -24.74001 -23.74541 -21.42630 -20.88116 -19.29804 -19.11502 -18.75332 -17.41008 -16.77902 -16.49468 -16.19216 -15.84996 -15.27129 -15.05767 -14.62730 -14.43874 -14.31110 -14.15147 -13.46008 -13.35899 -12.81938 -12.71915 -12.59775 -12.30866 -12.15097 -12.13751 -12.08007 -11.97050 -11.75726 -11.72242 -11.38298 -11.04112 -10.86387 -10.67619 -8.64150 -8.35307 -6.46473 -0.31658 0.70684 1.29189 1.39570 1.41656 1.51614 1.60197 1.83219 2.32650 2.45559 2.90179 2.98560 3.57681 3.62463 3.65141 3.93147 4.05697 4.32381 4.40387 4.43970 4.48605 4.53567 4.62418 4.63462 4.72275 4.78602 4.81438 4.86185 5.01802 5.16782 5.20320 5.27054 5.33501 5.42680 6.07240 6.58274 7.01225 7.16181 8.80717 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.051819 B = 0.003259 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.216657 B = 8588.580097 C = 8817.379582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.018 3.982 3 Si 0.956 3.044 4 H -0.262 1.262 5 H -0.282 1.282 6 H -0.234 1.234 7 C -0.533 4.533 8 H 0.032 0.968 9 C 0.053 3.947 10 S -0.274 6.274 11 C -0.004 4.004 12 C 0.210 3.790 13 N -0.489 5.489 14 C 0.179 3.821 15 C -0.008 4.008 16 C -0.112 4.112 17 C -0.115 4.115 18 C -0.119 4.119 19 C -0.117 4.117 20 N -0.395 5.395 21 O 0.074 5.926 22 H 0.273 0.727 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.146 0.854 26 H 0.143 0.857 27 H 0.114 0.886 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.048 0.952 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.290 -11.811 -2.446 25.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.182 4.182 3 Si 0.777 3.223 4 H -0.186 1.186 5 H -0.208 1.208 6 H -0.157 1.157 7 C -0.572 4.572 8 H 0.051 0.949 9 C -0.095 4.095 10 S -0.049 6.049 11 C -0.152 4.152 12 C -0.011 4.011 13 N -0.224 5.224 14 C -0.094 4.094 15 C -0.028 4.028 16 C -0.151 4.151 17 C -0.153 4.153 18 C -0.156 4.156 19 C -0.156 4.156 20 N -0.105 5.105 21 O 0.017 5.983 22 H 0.082 0.918 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.164 0.836 26 H 0.161 0.839 27 H 0.132 0.868 28 H 0.099 0.901 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.066 0.934 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 21.920 -13.352 -2.337 25.772 hybrid contribution -0.160 1.958 0.203 1.975 sum 21.759 -11.394 -2.135 24.655 Atomic orbital electron populations 1.70032 1.08541 1.28852 1.50716 1.25940 0.95659 1.03414 0.93151 0.85586 0.79778 0.77231 0.79672 1.18648 1.20761 1.15692 1.20631 0.89579 0.93759 1.53238 0.94922 1.21327 0.97947 0.89218 1.00995 1.87392 1.00845 1.18490 1.98216 1.21788 0.94350 0.88278 1.10799 1.27900 0.95296 0.97123 0.80778 1.71955 1.16793 1.04637 1.29000 1.26299 0.98456 0.96254 0.88393 1.20708 0.96254 0.87684 0.98204 1.22590 0.92746 0.98516 1.01224 1.22347 0.97341 0.93091 1.02505 1.22120 0.93946 0.96936 1.02625 1.22241 0.98844 0.93042 1.01498 1.74538 1.17789 1.01904 1.16268 1.85297 1.55448 1.21821 1.35696 0.91839 0.92379 0.92820 0.83615 0.83874 0.86768 0.90064 0.92088 0.89995 0.89718 0.91521 0.89845 0.93357 0.90566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.39 13.96 21.45 0.30 -57.09 16 2 C 0.02 1.02 5.47 84.65 0.46 1.48 16 3 Si 0.96 40.39 27.47 68.60 1.88 42.28 16 4 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.23 -8.66 6.54 99.48 0.65 -8.01 16 7 C -0.53 -29.98 9.68 25.60 0.25 -29.74 16 8 H 0.03 2.11 7.96 -2.91 -0.02 2.09 16 9 C 0.05 2.31 4.77 71.23 0.34 2.65 16 10 S -0.27 -10.86 21.64 -56.49 -1.22 -12.08 16 11 C 0.00 -0.10 6.57 71.23 0.47 0.37 16 12 C 0.21 6.23 7.77 88.38 0.69 6.91 16 13 N -0.49 -15.11 11.55 -303.19 -3.50 -18.61 16 14 C 0.18 5.04 6.73 138.46 0.93 5.97 16 15 C -0.01 -0.18 3.39 -10.46 -0.04 -0.21 16 16 C -0.11 -1.84 6.32 31.89 0.20 -1.64 16 17 C -0.12 -1.34 6.83 31.67 0.22 -1.12 16 18 C -0.12 -1.59 6.80 31.32 0.21 -1.38 16 19 C -0.12 -2.24 6.36 31.32 0.20 -2.04 16 20 N -0.40 -11.97 11.84 -60.31 -0.71 -12.68 16 21 O 0.07 2.25 11.31 74.85 0.85 3.10 16 22 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 23 H 0.06 2.33 7.20 -2.39 -0.02 2.32 16 24 H 0.05 2.16 7.57 -2.39 -0.02 2.14 16 25 H 0.15 3.04 8.14 -2.39 -0.02 3.02 16 26 H 0.14 3.30 8.14 -2.39 -0.02 3.28 16 27 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.08 1.17 8.14 -2.39 -0.02 1.16 16 29 H 0.06 1.18 7.89 -2.39 -0.02 1.16 16 30 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.05 1.12 7.72 -2.39 -0.02 1.11 16 35 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 Total: -1.00 -67.85 309.14 2.55 -65.30 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: 1.02 Total: 8.52 kcal Atomic # 6 Polarization: -22.67 SS G_CDS: 3.93 Total: -18.74 kcal Atomic # 7 Polarization: -84.46 SS G_CDS: -3.92 Total: -88.38 kcal Atomic # 8 Polarization: 2.25 SS G_CDS: 0.85 Total: 3.10 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 1.88 Total: 42.28 kcal Atomic # 16 Polarization: -10.86 SS G_CDS: -1.22 Total: -12.08 kcal Total: -67.85 2.55 -65.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413017650.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.010 kcal (2) G-P(sol) polarization free energy of solvation -67.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds