Wall clock time and date at job start Mon Mar 30 2020 07:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 120.00075 * 2 1 4 4 H 1.48494 * 109.47148 * 270.00624 * 3 2 1 5 5 H 1.48510 * 109.46841 * 30.00530 * 3 2 1 6 6 H 1.48503 * 109.47015 * 150.00065 * 3 2 1 7 7 C 1.37876 * 119.99830 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99682 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00134 * 359.97438 * 7 2 1 10 10 O 1.42102 * 103.00006 * 66.14827 * 9 7 2 11 11 C 1.81399 * 103.00111 * 179.97438 * 9 7 2 12 12 C 1.53001 * 109.47472 * 180.02562 * 11 9 7 13 13 C 1.52995 * 109.47181 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.47181 * 180.02562 * 13 12 11 15 15 O 1.42902 * 109.47386 * 180.02562 * 14 13 12 16 16 C 1.35898 * 116.99694 * 180.02562 * 15 14 13 17 17 C 1.38735 * 120.05254 * 179.97438 * 16 15 14 18 18 C 1.38144 * 119.94607 * 179.97438 * 17 16 15 19 19 C 1.38266 * 120.05233 * 0.02562 * 18 17 16 20 20 C 1.38269 * 120.11595 * 359.95530 * 19 18 17 21 21 C 1.38142 * 120.04935 * 0.04230 * 20 19 18 22 22 H 0.97001 * 119.99717 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47152 * 59.99502 * 11 9 7 24 24 H 1.09009 * 109.47390 * 299.99972 * 11 9 7 25 25 H 1.08999 * 109.46920 * 59.99808 * 12 11 9 26 26 H 1.08993 * 109.46801 * 299.99991 * 12 11 9 27 27 H 1.08999 * 109.47370 * 60.00060 * 13 12 11 28 28 H 1.09006 * 109.47017 * 299.99902 * 13 12 11 29 29 H 1.08999 * 109.46920 * 59.99785 * 14 13 12 30 30 H 1.08998 * 109.47220 * 300.00155 * 14 13 12 31 31 H 1.08002 * 120.02704 * 359.70561 * 17 16 15 32 32 H 1.08001 * 119.97447 * 179.97438 * 18 17 16 33 33 H 1.08000 * 119.94089 * 179.97438 * 19 18 17 34 34 H 1.07992 * 119.97577 * 180.02562 * 20 19 18 35 35 H 1.08005 * 120.02748 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4783 -2.7166 -1.2666 11 6 2.4502 -3.9571 -0.0021 12 6 1.8394 -5.3600 -0.0029 13 6 2.9584 -6.4034 -0.0036 14 6 2.3476 -7.8062 -0.0050 15 8 3.3928 -8.7808 -0.0051 16 6 3.0181 -10.0871 -0.0068 17 6 3.9808 -11.0860 -0.0075 18 6 3.5975 -12.4132 -0.0088 19 6 2.2556 -12.7463 -0.0099 20 6 1.2941 -11.7527 -0.0088 21 6 1.6724 -10.4241 -0.0075 22 1 -0.4850 0.8401 0.0004 23 1 3.0671 -3.8295 0.8874 24 1 3.0657 -3.8288 -0.8926 25 1 1.2228 -5.4872 -0.8927 26 1 1.2237 -5.4886 0.8872 27 1 3.5746 -6.2759 0.8864 28 1 3.5745 -6.2748 -0.8936 29 1 1.7317 -7.9333 -0.8953 30 1 1.7313 -7.9350 0.8846 31 1 5.0292 -10.8263 -0.0115 32 1 4.3466 -13.1912 -0.0097 33 1 1.9579 -13.7845 -0.0113 34 1 0.2466 -12.0155 -0.0093 35 1 0.9210 -9.6482 -0.0071 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000526867915.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:25 Heat of formation + Delta-G solvation = -80.181191 kcal Electronic energy + Delta-G solvation = -16869.714850 eV Core-core repulsion = 13958.735367 eV Total energy + Delta-G solvation = -2910.979483 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.20540 -37.65646 -34.73137 -33.57500 -32.77226 -31.24428 -30.27665 -28.64641 -25.85065 -24.11579 -22.69566 -21.78622 -20.85442 -18.35332 -17.80449 -16.34626 -16.24474 -15.89499 -15.38926 -15.06320 -14.63803 -14.56443 -13.79721 -13.57676 -13.52939 -13.05728 -12.95635 -12.21527 -11.98000 -11.87264 -11.73286 -11.31314 -11.21476 -11.04487 -10.97161 -10.73636 -10.69892 -10.49928 -10.35882 -10.01575 -9.21210 -9.01287 -8.36095 -8.23179 -6.82946 -6.30324 -4.79356 1.13316 1.26479 3.06331 3.12718 3.19183 3.22402 3.60119 3.67116 4.18724 4.62219 4.69117 4.86094 4.91802 4.93402 4.97924 5.17022 5.20112 5.30172 5.33641 5.42990 5.51047 5.71685 5.80067 5.84737 5.91378 6.12935 6.21050 6.23199 6.27497 6.32143 6.37387 6.60674 6.71213 6.85808 7.32358 7.48361 8.20375 9.10031 10.48382 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.063866 B = 0.002704 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.310412 B =10352.257296 C =10691.936063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.119 3.881 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.823 4.823 8 H 0.078 0.922 9 S 1.342 4.658 10 O -0.909 6.909 11 C -0.482 4.482 12 C -0.088 4.088 13 C -0.114 4.114 14 C 0.057 3.943 15 O -0.316 6.316 16 C 0.135 3.865 17 C -0.157 4.157 18 C -0.083 4.083 19 C -0.165 4.165 20 C -0.080 4.080 21 C -0.211 4.211 22 H 0.280 0.720 23 H 0.094 0.906 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.129 0.871 32 H 0.127 0.873 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.458 -20.453 5.367 21.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.094 4.094 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.964 4.964 8 H 0.096 0.904 9 S 1.540 4.460 10 O -0.904 6.904 11 C -0.613 4.613 12 C -0.127 4.127 13 C -0.152 4.152 14 C -0.018 4.018 15 O -0.229 6.229 16 C 0.089 3.911 17 C -0.176 4.176 18 C -0.101 4.101 19 C -0.184 4.184 20 C -0.098 4.098 21 C -0.229 4.229 22 H 0.090 0.910 23 H 0.112 0.888 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.147 0.853 32 H 0.145 0.855 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.513 -20.459 5.338 21.293 hybrid contribution 1.822 1.354 -1.852 2.930 sum 4.335 -19.105 3.486 19.899 Atomic orbital electron populations 1.69900 1.06448 1.29198 1.43316 1.24763 0.94513 0.99923 0.90250 0.86401 0.80272 0.81452 0.78784 1.20035 1.20254 1.19031 1.27464 1.01842 1.06149 1.60968 0.90387 1.68974 0.84729 0.84534 1.07764 1.92809 1.64964 1.85886 1.46698 1.28159 1.18581 1.09617 1.04923 1.20979 0.96689 0.92817 1.02201 1.21656 0.99569 0.90517 1.03497 1.23033 0.89580 0.87675 1.01504 1.86086 1.36340 1.12482 1.88040 1.19110 0.92880 0.84066 0.95067 1.20480 0.99068 0.91262 1.06792 1.20956 0.96227 0.95194 0.97698 1.21046 0.93072 0.99334 1.04922 1.20971 0.99605 0.92129 0.97120 1.21361 0.94996 0.97949 1.08629 0.91023 0.88780 0.91701 0.92002 0.91109 0.90808 0.91342 0.91960 0.91703 0.85305 0.85544 0.86084 0.85837 0.85223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.34 13.15 55.43 0.73 -23.61 16 2 C 0.12 3.28 5.46 -17.82 -0.10 3.18 16 3 Si 0.91 20.80 29.54 -169.99 -5.02 15.77 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 7 C -0.82 -22.50 9.38 30.60 0.29 -22.21 16 8 H 0.08 2.07 7.81 -52.49 -0.41 1.66 16 9 S 1.34 32.14 12.98 -107.50 -1.40 30.74 16 10 O -0.91 -27.72 17.82 -35.23 -0.63 -28.35 16 11 C -0.48 -9.30 5.88 37.16 0.22 -9.08 16 12 C -0.09 -1.40 5.22 -26.73 -0.14 -1.53 16 13 C -0.11 -1.57 5.58 -26.73 -0.15 -1.72 16 14 C 0.06 0.70 4.74 37.16 0.18 0.87 16 15 O -0.32 -4.25 10.14 -19.42 -0.20 -4.44 16 16 C 0.13 1.65 6.69 -39.22 -0.26 1.39 16 17 C -0.16 -1.69 9.99 -39.43 -0.39 -2.09 16 18 C -0.08 -0.74 10.04 -39.61 -0.40 -1.14 16 19 C -0.17 -1.44 10.04 -39.56 -0.40 -1.84 16 20 C -0.08 -0.75 10.04 -39.61 -0.40 -1.15 16 21 C -0.21 -2.29 9.04 -39.44 -0.36 -2.65 16 22 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16 23 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 24 H 0.06 1.38 8.14 -51.92 -0.42 0.95 16 25 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.73 7.66 -51.93 -0.40 0.33 16 30 H 0.06 0.69 7.66 -51.93 -0.40 0.29 16 31 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 32 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 33 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 35 H 0.13 1.27 6.30 -52.48 -0.33 0.94 16 LS Contribution 315.88 15.07 4.76 4.76 Total: -1.00 -35.12 315.88 -8.56 -43.68 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -4.90 Total: -0.58 kcal Atomic # 6 Polarization: -36.06 SS G_CDS: -1.91 Total: -37.97 kcal Atomic # 7 Polarization: -24.34 SS G_CDS: 0.73 Total: -23.61 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -0.82 Total: -32.80 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 32.14 SS G_CDS: -1.40 Total: 30.74 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -35.12 -8.56 -43.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526867915.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.504 kcal (2) G-P(sol) polarization free energy of solvation -35.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds