Wall clock time and date at job start Mon Mar 30 2020 07:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 120.00075 * 2 1 4 4 H 1.48494 * 109.47148 * 270.00624 * 3 2 1 5 5 H 1.48510 * 109.46841 * 30.00530 * 3 2 1 6 6 H 1.48503 * 109.47015 * 150.00065 * 3 2 1 7 7 C 1.37876 * 119.99830 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99682 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00134 * 359.97438 * 7 2 1 10 10 O 1.42102 * 103.00006 * 66.14827 * 9 7 2 11 11 C 1.81399 * 103.00111 * 179.97438 * 9 7 2 12 12 C 1.53001 * 109.47472 * 180.02562 * 11 9 7 13 13 C 1.52995 * 109.47181 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.47181 * 180.02562 * 13 12 11 15 15 O 1.42902 * 109.47386 * 180.02562 * 14 13 12 16 16 C 1.35898 * 116.99694 * 180.02562 * 15 14 13 17 17 C 1.38735 * 120.05254 * 179.97438 * 16 15 14 18 18 C 1.38144 * 119.94607 * 179.97438 * 17 16 15 19 19 C 1.38266 * 120.05233 * 0.02562 * 18 17 16 20 20 C 1.38269 * 120.11595 * 359.95530 * 19 18 17 21 21 C 1.38142 * 120.04935 * 0.04230 * 20 19 18 22 22 H 0.97001 * 119.99717 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47152 * 59.99502 * 11 9 7 24 24 H 1.09009 * 109.47390 * 299.99972 * 11 9 7 25 25 H 1.08999 * 109.46920 * 59.99808 * 12 11 9 26 26 H 1.08993 * 109.46801 * 299.99991 * 12 11 9 27 27 H 1.08999 * 109.47370 * 60.00060 * 13 12 11 28 28 H 1.09006 * 109.47017 * 299.99902 * 13 12 11 29 29 H 1.08999 * 109.46920 * 59.99785 * 14 13 12 30 30 H 1.08998 * 109.47220 * 300.00155 * 14 13 12 31 31 H 1.08002 * 120.02704 * 359.70561 * 17 16 15 32 32 H 1.08001 * 119.97447 * 179.97438 * 18 17 16 33 33 H 1.08000 * 119.94089 * 179.97438 * 19 18 17 34 34 H 1.07992 * 119.97577 * 180.02562 * 20 19 18 35 35 H 1.08005 * 120.02748 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4783 -2.7166 -1.2666 11 6 2.4502 -3.9571 -0.0021 12 6 1.8394 -5.3600 -0.0029 13 6 2.9584 -6.4034 -0.0036 14 6 2.3476 -7.8062 -0.0050 15 8 3.3928 -8.7808 -0.0051 16 6 3.0181 -10.0871 -0.0068 17 6 3.9808 -11.0860 -0.0075 18 6 3.5975 -12.4132 -0.0088 19 6 2.2556 -12.7463 -0.0099 20 6 1.2941 -11.7527 -0.0088 21 6 1.6724 -10.4241 -0.0075 22 1 -0.4850 0.8401 0.0004 23 1 3.0671 -3.8295 0.8874 24 1 3.0657 -3.8288 -0.8926 25 1 1.2228 -5.4872 -0.8927 26 1 1.2237 -5.4886 0.8872 27 1 3.5746 -6.2759 0.8864 28 1 3.5745 -6.2748 -0.8936 29 1 1.7317 -7.9333 -0.8953 30 1 1.7313 -7.9350 0.8846 31 1 5.0292 -10.8263 -0.0115 32 1 4.3466 -13.1912 -0.0097 33 1 1.9579 -13.7845 -0.0113 34 1 0.2466 -12.0155 -0.0093 35 1 0.9210 -9.6482 -0.0071 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000526867915.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:24 Heat of formation + Delta-G solvation = -103.502376 kcal Electronic energy + Delta-G solvation = -16870.726132 eV Core-core repulsion = 13958.735367 eV Total energy + Delta-G solvation = -2911.990765 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.03133 -38.48082 -35.97974 -35.74148 -34.86017 -31.99720 -31.17903 -29.76167 -27.93779 -25.22865 -23.52545 -22.72556 -21.99944 -19.89139 -19.11552 -17.47566 -17.34751 -17.10863 -16.93055 -16.62770 -15.87207 -15.48987 -15.22113 -15.09596 -14.39713 -14.30662 -14.25105 -13.76427 -13.29309 -13.07915 -13.06621 -12.95713 -12.75348 -12.46797 -12.34713 -12.17505 -12.10220 -11.78292 -11.65555 -11.45899 -11.06929 -10.28630 -9.93958 -9.15838 -8.84682 -8.35592 -6.93345 0.40644 0.50723 1.28824 1.33286 1.45423 1.77711 2.22315 2.30936 2.79985 2.86450 3.33214 3.81827 3.87978 3.95777 4.02409 4.04940 4.24871 4.29745 4.34482 4.37420 4.52413 4.56242 4.61147 4.78506 4.82755 4.94506 5.09582 5.10763 5.27688 5.36005 5.39866 5.40493 5.50241 5.61557 5.89534 6.08753 6.47011 6.99645 8.43842 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.063866 B = 0.002704 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.310412 B =10352.257296 C =10691.936063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.970 3.030 4 H -0.283 1.283 5 H -0.258 1.258 6 H -0.252 1.252 7 C -0.854 4.854 8 H 0.077 0.923 9 S 1.366 4.634 10 O -0.981 6.981 11 C -0.463 4.463 12 C -0.089 4.089 13 C -0.106 4.106 14 C 0.060 3.940 15 O -0.334 6.334 16 C 0.105 3.895 17 C -0.173 4.173 18 C -0.083 4.083 19 C -0.165 4.165 20 C -0.087 4.087 21 C -0.224 4.224 22 H 0.286 0.714 23 H 0.124 0.876 24 H 0.042 0.958 25 H 0.045 0.955 26 H 0.105 0.895 27 H 0.085 0.915 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.132 0.868 32 H 0.153 0.847 33 H 0.148 0.852 34 H 0.146 0.854 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.155 -21.842 6.601 23.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.146 4.146 3 Si 0.791 3.209 4 H -0.209 1.209 5 H -0.181 1.181 6 H -0.176 1.176 7 C -0.994 4.994 8 H 0.096 0.904 9 S 1.569 4.431 10 O -0.976 6.976 11 C -0.598 4.598 12 C -0.128 4.128 13 C -0.145 4.145 14 C -0.015 4.015 15 O -0.249 6.249 16 C 0.060 3.940 17 C -0.192 4.192 18 C -0.101 4.101 19 C -0.183 4.183 20 C -0.105 4.105 21 C -0.242 4.242 22 H 0.096 0.904 23 H 0.142 0.858 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.123 0.877 27 H 0.104 0.896 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.150 0.850 32 H 0.171 0.829 33 H 0.166 0.834 34 H 0.163 0.837 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.178 -21.825 6.580 23.016 hybrid contribution 1.683 1.596 -2.210 3.203 sum 4.861 -20.229 4.371 21.259 Atomic orbital electron populations 1.69977 1.07869 1.30492 1.43823 1.25735 0.95446 1.03754 0.89688 0.85426 0.79673 0.77306 0.78484 1.20883 1.18147 1.17587 1.27860 1.02105 1.08073 1.61404 0.90431 1.67826 0.85552 0.83965 1.05784 1.92708 1.68462 1.87116 1.49316 1.27875 1.16547 1.10019 1.05387 1.21018 0.97489 0.91069 1.03201 1.21494 0.98632 0.91011 1.03371 1.22943 0.89407 0.86675 1.02465 1.86023 1.36871 1.13295 1.88698 1.19409 0.93952 0.83685 0.96952 1.20733 0.99200 0.91987 1.07275 1.21320 0.97253 0.95005 0.96541 1.21450 0.92833 1.00627 1.03373 1.21320 1.01088 0.91643 0.96428 1.21545 0.94629 0.99037 1.09011 0.90406 0.85797 0.93866 0.93606 0.87701 0.89637 0.92815 0.91967 0.89839 0.85023 0.82887 0.83385 0.83659 0.84733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.08 13.15 21.45 0.28 -50.79 16 2 C 0.06 3.52 5.46 84.65 0.46 3.98 16 3 Si 0.97 42.28 29.54 68.60 2.03 44.31 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 6 H -0.25 -10.34 7.11 99.48 0.71 -9.64 16 7 C -0.85 -47.02 9.38 67.73 0.64 -46.38 16 8 H 0.08 4.12 7.81 -2.91 -0.02 4.10 16 9 S 1.37 66.28 12.98 -56.49 -0.73 65.54 16 10 O -0.98 -61.72 17.82 -148.98 -2.65 -64.37 16 11 C -0.46 -17.51 5.88 71.98 0.42 -17.09 16 12 C -0.09 -2.71 5.22 30.59 0.16 -2.55 16 13 C -0.11 -2.81 5.58 30.59 0.17 -2.64 16 14 C 0.06 1.40 4.74 71.98 0.34 1.74 16 15 O -0.33 -8.85 10.14 -92.40 -0.94 -9.78 16 16 C 0.11 2.51 6.69 22.51 0.15 2.66 16 17 C -0.17 -3.57 9.99 22.37 0.22 -3.35 16 18 C -0.08 -1.31 10.04 22.25 0.22 -1.09 16 19 C -0.16 -2.42 10.04 22.28 0.22 -2.20 16 20 C -0.09 -1.44 10.04 22.25 0.22 -1.22 16 21 C -0.22 -4.61 9.04 22.36 0.20 -4.41 16 22 H 0.29 15.07 8.31 -92.71 -0.77 14.30 16 23 H 0.12 3.97 8.14 -2.39 -0.02 3.95 16 24 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 27 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 29 H 0.06 1.43 7.66 -2.39 -0.02 1.41 16 30 H 0.08 1.62 7.66 -2.39 -0.02 1.60 16 31 H 0.13 2.49 8.06 -2.91 -0.02 2.46 16 32 H 0.15 1.49 8.06 -2.91 -0.02 1.46 16 33 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 34 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 35 H 0.13 2.50 6.30 -2.91 -0.02 2.48 16 Total: -1.00 -77.17 315.88 2.49 -74.69 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 1.06 Total: 12.94 kcal Atomic # 6 Polarization: -75.97 SS G_CDS: 3.44 Total: -72.53 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: 0.28 Total: -50.79 kcal Atomic # 8 Polarization: -70.56 SS G_CDS: -3.59 Total: -74.15 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Atomic # 16 Polarization: 66.28 SS G_CDS: -0.73 Total: 65.54 kcal Total: -77.17 2.49 -74.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526867915.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.814 kcal (2) G-P(sol) polarization free energy of solvation -77.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds