Wall clock time and date at job start Mon Mar 30 2020 07:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38270 * 119.94421 * 2 1 4 4 C 1.38138 * 120.05794 * 180.26220 * 3 2 1 5 5 C 1.38736 * 119.94337 * 359.46080 * 4 3 2 6 6 O 1.35893 * 120.05957 * 180.30421 * 5 4 3 7 7 C 1.42899 * 117.00392 * 180.02562 * 6 5 4 8 8 C 1.53003 * 109.47433 * 179.97438 * 7 6 5 9 9 C 1.52994 * 109.47213 * 179.97438 * 8 7 6 10 10 S 1.81399 * 109.47436 * 180.02562 * 9 8 7 11 11 O 1.42106 * 109.46525 * 289.05749 * 10 9 8 12 12 C 1.76195 * 103.00363 * 180.02562 * 10 9 8 13 13 H 1.08004 * 119.99915 * 359.97438 * 12 10 9 14 14 C 1.37871 * 119.99870 * 180.02562 * 12 10 9 15 15 N 1.31517 * 120.00358 * 359.97438 * 14 12 10 16 16 Si 1.86809 * 119.99848 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47234 * 59.99496 * 16 14 12 18 18 H 1.48501 * 109.46884 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46692 * 299.99461 * 16 14 12 20 20 C 1.38740 * 119.88595 * 0.28279 * 5 4 3 21 21 C 1.38146 * 119.94197 * 359.97438 * 20 5 4 22 22 H 1.08998 * 109.47227 * 270.25304 * 1 2 3 23 23 H 1.08999 * 109.47575 * 30.25213 * 1 2 3 24 24 H 1.09002 * 109.47295 * 150.25537 * 1 2 3 25 25 H 1.08004 * 119.97397 * 0.02562 * 3 2 1 26 26 H 1.08002 * 120.03311 * 179.74549 * 4 3 2 27 27 H 1.09002 * 109.46729 * 299.99846 * 7 6 5 28 28 H 1.09001 * 109.47001 * 59.99870 * 7 6 5 29 29 H 1.08994 * 109.46893 * 300.00316 * 8 7 6 30 30 H 1.09001 * 109.46536 * 59.99754 * 8 7 6 31 31 H 1.09007 * 109.47061 * 300.00369 * 9 8 7 32 32 H 1.08998 * 109.47451 * 59.99451 * 9 8 7 33 33 H 0.97003 * 119.99993 * 180.02562 * 15 14 12 34 34 H 1.07993 * 120.02463 * 180.02562 * 20 5 4 35 35 H 1.08006 * 119.96944 * 179.97438 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5785 1.2009 -0.0055 5 6 4.2734 0.0001 0.0003 6 8 5.6324 0.0001 0.0012 7 6 6.2812 -1.2731 0.0068 8 6 7.7980 -1.0726 0.0063 9 6 8.4926 -2.4358 0.0129 10 16 10.2910 -2.1982 0.0131 11 8 10.7040 -1.7081 -1.2552 12 6 10.9089 -3.8482 0.0201 13 1 10.2223 -4.6819 0.0234 14 6 12.2688 -4.0750 0.0224 15 7 13.1049 -3.0598 0.0189 16 14 12.9240 -5.8244 0.0306 17 1 12.4431 -6.5387 -1.1792 18 1 14.4087 -5.7969 0.0314 19 1 12.4408 -6.5281 1.2458 20 6 3.5786 -1.2007 0.0057 21 6 2.1971 -1.1980 0.0058 22 1 -0.3633 0.0045 1.0276 23 1 -0.3634 0.8877 -0.5177 24 1 -0.3634 -0.8923 -0.5099 25 1 1.6558 2.1327 0.0004 26 1 4.1172 2.1370 -0.0096 27 1 5.9877 -1.8265 0.8988 28 1 5.9889 -1.8337 -0.8812 29 1 8.0910 -0.5194 -0.8859 30 1 8.0906 -0.5118 0.8940 31 1 8.1994 -2.9887 0.9054 32 1 8.2000 -2.9970 -0.8745 33 1 14.0617 -3.2194 0.0202 34 1 4.1172 -2.1367 0.0107 35 1 1.6557 -2.1326 0.0095 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000526868516.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:15 Heat of formation + Delta-G solvation = -80.444209 kcal Electronic energy + Delta-G solvation = -16994.145286 eV Core-core repulsion = 14083.154398 eV Total energy + Delta-G solvation = -2910.990888 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.15525 -37.80612 -33.66718 -33.56135 -32.77697 -31.82522 -31.11885 -27.04658 -25.95848 -25.53428 -23.01662 -21.45801 -20.90227 -18.26323 -17.75634 -16.14099 -16.11071 -15.47833 -15.35915 -14.99892 -14.44945 -14.15920 -13.86991 -13.65997 -13.59847 -13.23104 -12.85175 -12.32368 -12.22727 -12.00768 -11.66071 -11.39970 -11.27593 -11.21053 -11.07003 -10.79608 -10.69535 -10.52520 -10.37417 -10.05234 -9.12041 -9.03096 -8.29568 -8.09494 -6.86309 -6.32446 -4.81720 1.22722 1.32535 3.08673 3.15831 3.18863 3.24954 3.64214 3.68166 4.16546 4.66255 4.72126 4.83752 4.85560 5.05616 5.13796 5.21122 5.23644 5.29662 5.38347 5.44713 5.52618 5.60113 5.70657 5.72997 5.89392 5.99197 6.13525 6.18614 6.24592 6.35386 6.47262 6.64063 6.69163 6.77919 7.46183 7.46751 8.17436 9.07958 10.46786 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.051659 B = 0.002936 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.888125 B = 9533.524016 C = 9976.049694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.135 4.135 3 C -0.082 4.082 4 C -0.153 4.153 5 C 0.133 3.867 6 O -0.315 6.315 7 C 0.063 3.937 8 C -0.090 4.090 9 C -0.483 4.483 10 S 1.349 4.651 11 O -0.905 6.905 12 C -0.826 4.826 13 H 0.078 0.922 14 C 0.119 3.881 15 N -0.855 5.855 16 Si 0.906 3.094 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.266 1.266 20 C -0.208 4.208 21 C -0.080 4.080 22 H 0.065 0.935 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.126 0.874 26 H 0.130 0.870 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.281 0.719 34 H 0.129 0.871 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.809 5.429 5.355 21.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.135 4.135 3 C -0.100 4.100 4 C -0.172 4.172 5 C 0.087 3.913 6 O -0.229 6.229 7 C -0.013 4.013 8 C -0.128 4.128 9 C -0.613 4.613 10 S 1.546 4.454 11 O -0.900 6.900 12 C -0.966 4.966 13 H 0.096 0.904 14 C -0.094 4.094 15 N -0.487 5.487 16 Si 0.732 3.268 17 H -0.197 1.197 18 H -0.205 1.205 19 H -0.191 1.191 20 C -0.226 4.226 21 C -0.098 4.098 22 H 0.084 0.916 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.144 0.856 26 H 0.148 0.852 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.114 0.886 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.147 0.853 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -19.029 6.531 5.318 20.809 hybrid contribution -0.302 -2.802 -1.824 3.357 sum -19.331 3.729 3.494 19.995 Atomic orbital electron populations 1.20691 0.91264 1.02447 1.01971 1.19793 0.96082 0.93119 1.04553 1.20814 0.92997 0.97640 0.98555 1.20463 0.93751 0.96463 1.06501 1.19111 0.82995 0.94032 0.95209 1.86093 1.15705 1.33150 1.87909 1.23098 0.94092 0.83021 1.01080 1.21030 0.90423 0.97723 1.03619 1.28190 1.28839 0.99266 1.04968 1.69147 0.78846 0.89854 1.07506 1.92815 1.73606 1.77099 1.46475 1.27433 0.97837 1.10168 1.61203 0.90404 1.24759 0.95845 0.98589 0.90229 1.69886 1.04340 1.31503 1.43021 0.86431 0.77716 0.83331 0.79353 1.19740 1.20479 1.19104 1.21333 0.95351 0.97467 1.08480 1.20816 0.93300 0.97613 0.98103 0.91591 0.91815 0.91877 0.85601 0.85160 0.91928 0.92475 0.91099 0.90182 0.88636 0.91539 0.90896 0.85344 0.86024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.01 36.00 0.36 -0.40 16 2 C -0.14 -1.35 5.88 -104.60 -0.62 -1.97 16 3 C -0.08 -0.83 9.69 -39.61 -0.38 -1.22 16 4 C -0.15 -1.84 9.99 -39.43 -0.39 -2.23 16 5 C 0.13 1.82 6.69 -39.21 -0.26 1.56 16 6 O -0.32 -4.82 10.14 -19.40 -0.20 -5.02 16 7 C 0.06 0.92 4.74 37.16 0.18 1.10 16 8 C -0.09 -1.50 5.59 -26.73 -0.15 -1.65 16 9 C -0.48 -9.23 5.88 37.15 0.22 -9.01 16 10 S 1.35 32.27 12.98 -107.50 -1.40 30.88 16 11 O -0.91 -27.65 17.82 -35.23 -0.63 -28.28 16 12 C -0.83 -22.36 9.38 30.60 0.29 -22.07 16 13 H 0.08 2.03 7.81 -52.48 -0.41 1.62 16 14 C 0.12 3.27 5.46 -17.82 -0.10 3.17 16 15 N -0.85 -24.23 13.15 55.43 0.73 -23.50 16 16 Si 0.91 20.65 29.54 -169.99 -5.02 15.63 16 17 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 20 C -0.21 -2.58 9.04 -39.43 -0.36 -2.93 16 21 C -0.08 -0.86 9.69 -39.61 -0.38 -1.25 16 22 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 23 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 24 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 25 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 26 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 27 H 0.06 0.82 7.66 -51.93 -0.40 0.42 16 28 H 0.06 0.83 7.66 -51.93 -0.40 0.44 16 29 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 32 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.13 1.49 6.30 -52.49 -0.33 1.16 16 35 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 LS Contribution 315.79 15.07 4.76 4.76 Total: -1.00 -34.74 315.79 -8.25 -42.98 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -4.89 Total: -0.57 kcal Atomic # 6 Polarization: -35.29 SS G_CDS: -1.60 Total: -36.89 kcal Atomic # 7 Polarization: -24.23 SS G_CDS: 0.73 Total: -23.50 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -0.82 Total: -33.29 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 32.27 SS G_CDS: -1.40 Total: 30.88 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.74 -8.25 -42.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526868516.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.462 kcal (2) G-P(sol) polarization free energy of solvation -34.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds