Wall clock time and date at job start Mon Mar 30 2020 07:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38270 * 119.94421 * 2 1 4 4 C 1.38138 * 120.05794 * 180.26220 * 3 2 1 5 5 C 1.38736 * 119.94337 * 359.46080 * 4 3 2 6 6 O 1.35893 * 120.05957 * 180.30421 * 5 4 3 7 7 C 1.42899 * 117.00392 * 180.02562 * 6 5 4 8 8 C 1.53003 * 109.47433 * 179.97438 * 7 6 5 9 9 C 1.52994 * 109.47213 * 179.97438 * 8 7 6 10 10 S 1.81399 * 109.47436 * 180.02562 * 9 8 7 11 11 O 1.42106 * 109.46525 * 289.05749 * 10 9 8 12 12 C 1.76195 * 103.00363 * 180.02562 * 10 9 8 13 13 H 1.08004 * 119.99915 * 359.97438 * 12 10 9 14 14 C 1.37871 * 119.99870 * 180.02562 * 12 10 9 15 15 N 1.31517 * 120.00358 * 359.97438 * 14 12 10 16 16 Si 1.86809 * 119.99848 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47234 * 59.99496 * 16 14 12 18 18 H 1.48501 * 109.46884 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46692 * 299.99461 * 16 14 12 20 20 C 1.38740 * 119.88595 * 0.28279 * 5 4 3 21 21 C 1.38146 * 119.94197 * 359.97438 * 20 5 4 22 22 H 1.08998 * 109.47227 * 270.25304 * 1 2 3 23 23 H 1.08999 * 109.47575 * 30.25213 * 1 2 3 24 24 H 1.09002 * 109.47295 * 150.25537 * 1 2 3 25 25 H 1.08004 * 119.97397 * 0.02562 * 3 2 1 26 26 H 1.08002 * 120.03311 * 179.74549 * 4 3 2 27 27 H 1.09002 * 109.46729 * 299.99846 * 7 6 5 28 28 H 1.09001 * 109.47001 * 59.99870 * 7 6 5 29 29 H 1.08994 * 109.46893 * 300.00316 * 8 7 6 30 30 H 1.09001 * 109.46536 * 59.99754 * 8 7 6 31 31 H 1.09007 * 109.47061 * 300.00369 * 9 8 7 32 32 H 1.08998 * 109.47451 * 59.99451 * 9 8 7 33 33 H 0.97003 * 119.99993 * 180.02562 * 15 14 12 34 34 H 1.07993 * 120.02463 * 180.02562 * 20 5 4 35 35 H 1.08006 * 119.96944 * 179.97438 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5785 1.2009 -0.0055 5 6 4.2734 0.0001 0.0003 6 8 5.6324 0.0001 0.0012 7 6 6.2812 -1.2731 0.0068 8 6 7.7980 -1.0726 0.0063 9 6 8.4926 -2.4358 0.0129 10 16 10.2910 -2.1982 0.0131 11 8 10.7040 -1.7081 -1.2552 12 6 10.9089 -3.8482 0.0201 13 1 10.2223 -4.6819 0.0234 14 6 12.2688 -4.0750 0.0224 15 7 13.1049 -3.0598 0.0189 16 14 12.9240 -5.8244 0.0306 17 1 12.4431 -6.5387 -1.1792 18 1 14.4087 -5.7969 0.0314 19 1 12.4408 -6.5281 1.2458 20 6 3.5786 -1.2007 0.0057 21 6 2.1971 -1.1980 0.0058 22 1 -0.3633 0.0045 1.0276 23 1 -0.3634 0.8877 -0.5177 24 1 -0.3634 -0.8923 -0.5099 25 1 1.6558 2.1327 0.0004 26 1 4.1172 2.1370 -0.0096 27 1 5.9877 -1.8265 0.8988 28 1 5.9889 -1.8337 -0.8812 29 1 8.0910 -0.5194 -0.8859 30 1 8.0906 -0.5118 0.8940 31 1 8.1994 -2.9887 0.9054 32 1 8.2000 -2.9970 -0.8745 33 1 14.0617 -3.2194 0.0202 34 1 4.1172 -2.1367 0.0107 35 1 1.6557 -2.1326 0.0095 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000526868516.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:15 Heat of formation + Delta-G solvation = -103.539018 kcal Electronic energy + Delta-G solvation = -16995.146752 eV Core-core repulsion = 14083.154398 eV Total energy + Delta-G solvation = -2911.992354 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.10412 -38.75515 -35.79082 -35.03778 -34.74068 -32.67942 -31.96249 -28.26525 -27.79107 -26.62861 -24.03157 -22.54263 -21.95275 -19.91512 -19.11916 -17.52792 -17.29987 -17.22125 -16.72169 -16.24049 -15.42999 -15.40360 -15.33691 -14.93672 -14.47067 -14.41169 -14.29470 -13.77569 -13.41450 -13.09911 -12.97125 -12.95428 -12.82495 -12.59407 -12.39436 -12.38274 -12.22061 -11.91842 -11.66164 -11.47968 -11.05935 -10.35109 -9.96552 -8.99397 -8.87236 -8.36315 -6.94133 0.38188 0.45548 1.28672 1.35616 1.44487 1.70685 2.23803 2.32422 2.79050 2.80294 3.32515 3.82266 3.85533 3.95038 4.03301 4.08315 4.09269 4.20222 4.37829 4.45563 4.47232 4.53698 4.73286 4.84100 4.86717 4.90338 5.10006 5.10743 5.17828 5.25249 5.38327 5.39544 5.42355 5.68647 5.89870 6.08271 6.46003 6.99253 8.43706 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.051659 B = 0.002936 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.888125 B = 9533.524016 C = 9976.049694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.134 4.134 3 C -0.083 4.083 4 C -0.165 4.165 5 C 0.100 3.900 6 O -0.333 6.333 7 C 0.070 3.930 8 C -0.091 4.091 9 C -0.460 4.460 10 S 1.369 4.631 11 O -0.980 6.980 12 C -0.854 4.854 13 H 0.081 0.919 14 C 0.064 3.936 15 N -0.889 5.889 16 Si 0.971 3.029 17 H -0.280 1.280 18 H -0.269 1.269 19 H -0.243 1.243 20 C -0.219 4.219 21 C -0.088 4.088 22 H 0.077 0.923 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.153 0.847 26 H 0.135 0.865 27 H 0.084 0.916 28 H 0.053 0.947 29 H 0.046 0.954 30 H 0.104 0.896 31 H 0.131 0.869 32 H 0.050 0.950 33 H 0.286 0.714 34 H 0.132 0.868 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.124 4.555 6.538 23.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.135 4.135 3 C -0.101 4.101 4 C -0.184 4.184 5 C 0.055 3.945 6 O -0.248 6.248 7 C -0.006 4.006 8 C -0.130 4.130 9 C -0.595 4.595 10 S 1.571 4.429 11 O -0.975 6.975 12 C -0.994 4.994 13 H 0.099 0.901 14 C -0.147 4.147 15 N -0.522 5.522 16 Si 0.792 3.208 17 H -0.206 1.206 18 H -0.193 1.193 19 H -0.166 1.166 20 C -0.237 4.237 21 C -0.106 4.106 22 H 0.095 0.905 23 H 0.094 0.906 24 H 0.090 0.910 25 H 0.171 0.829 26 H 0.153 0.847 27 H 0.102 0.898 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.122 0.878 31 H 0.149 0.851 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.149 0.851 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -21.312 5.667 6.510 22.993 hybrid contribution 0.185 -2.477 -2.165 3.295 sum -21.127 3.189 4.345 21.804 Atomic orbital electron populations 1.20756 0.88941 1.03563 1.03008 1.20233 0.97833 0.92718 1.02671 1.21171 0.92332 0.99092 0.97526 1.20715 0.94772 0.96235 1.06683 1.19407 0.82318 0.95296 0.97509 1.86024 1.16966 1.33054 1.88721 1.22900 0.92358 0.83318 1.02011 1.21005 0.92205 0.96054 1.03703 1.27816 1.24475 1.01153 1.06051 1.68015 0.80871 0.88428 1.05581 1.92717 1.77171 1.78475 1.49105 1.27812 0.98654 1.11431 1.61490 0.90073 1.25754 0.96249 1.03007 0.89652 1.69976 1.04865 1.33702 1.43678 0.85441 0.77622 0.77944 0.79752 1.20596 1.19314 1.16603 1.21487 0.96292 0.97148 1.08821 1.21142 0.92799 0.99034 0.97645 0.90462 0.90571 0.90993 0.82917 0.84733 0.89752 0.92823 0.93549 0.87758 0.85056 0.93070 0.90391 0.85058 0.83931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 10.01 71.23 0.71 -0.44 16 2 C -0.13 -2.35 5.88 -19.85 -0.12 -2.46 16 3 C -0.08 -1.52 9.69 22.25 0.22 -1.31 16 4 C -0.17 -3.83 9.99 22.37 0.22 -3.61 16 5 C 0.10 2.69 6.69 22.51 0.15 2.84 16 6 O -0.33 -10.13 10.14 -92.34 -0.94 -11.07 16 7 C 0.07 2.00 4.74 71.98 0.34 2.34 16 8 C -0.09 -3.02 5.59 30.59 0.17 -2.85 16 9 C -0.46 -17.25 5.88 71.98 0.42 -16.82 16 10 S 1.37 66.66 12.98 -56.49 -0.73 65.93 16 11 O -0.98 -62.11 17.82 -148.98 -2.65 -64.76 16 12 C -0.85 -46.45 9.38 67.73 0.64 -45.81 16 13 H 0.08 4.20 7.81 -2.91 -0.02 4.18 16 14 C 0.06 3.49 5.46 84.65 0.46 3.95 16 15 N -0.89 -51.13 13.15 21.45 0.28 -50.85 16 16 Si 0.97 41.89 29.54 68.60 2.03 43.92 16 17 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 18 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 19 H -0.24 -9.48 7.11 99.48 0.71 -8.77 16 20 C -0.22 -5.20 9.04 22.37 0.20 -5.00 16 21 C -0.09 -1.72 9.69 22.25 0.22 -1.50 16 22 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 23 H 0.08 0.66 8.09 -2.39 -0.02 0.64 16 24 H 0.07 0.67 8.08 -2.39 -0.02 0.65 16 25 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 26 H 0.13 2.85 8.06 -2.91 -0.02 2.83 16 27 H 0.08 2.03 7.66 -2.39 -0.02 2.01 16 28 H 0.05 1.55 7.66 -2.39 -0.02 1.53 16 29 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 31 H 0.13 4.01 8.14 -2.39 -0.02 3.99 16 32 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.29 15.14 8.31 -92.71 -0.77 14.37 16 34 H 0.13 2.91 6.30 -2.91 -0.02 2.89 16 35 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -76.55 315.79 2.69 -73.86 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 1.07 Total: 13.63 kcal Atomic # 6 Polarization: -74.29 SS G_CDS: 3.64 Total: -70.65 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: 0.28 Total: -50.85 kcal Atomic # 8 Polarization: -72.24 SS G_CDS: -3.59 Total: -75.83 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Atomic # 16 Polarization: 66.66 SS G_CDS: -0.73 Total: 65.93 kcal Total: -76.55 2.69 -73.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526868516.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.681 kcal (2) G-P(sol) polarization free energy of solvation -76.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds