Wall clock time and date at job start Mon Mar 30 2020 07:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86800 * 119.99862 * 2 1 4 4 H 1.48506 * 109.47425 * 270.00364 * 3 2 1 5 5 H 1.48501 * 109.47376 * 30.00444 * 3 2 1 6 6 H 1.48500 * 109.47221 * 150.00476 * 3 2 1 7 7 C 1.39874 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00389 * 161.55466 * 7 2 1 9 9 C 1.41183 * 119.99916 * 341.55574 * 7 2 1 10 10 C 1.40889 * 120.36055 * 335.98290 * 9 7 2 11 11 C 1.35854 * 119.26896 * 180.11927 * 10 9 7 12 12 C 1.40569 * 121.23307 * 0.02642 * 11 10 9 13 13 C 1.38364 * 119.97047 * 359.81756 * 12 11 10 14 14 C 1.37797 * 119.24853 * 0.21068 * 13 12 11 15 15 C 1.50693 * 125.51975 * 180.30605 * 13 12 11 16 16 O 1.41037 * 114.03824 * 11.55091 * 15 13 12 17 17 C 1.35290 * 119.14359 * 293.99995 * 16 15 13 18 18 C 1.38714 * 120.56832 * 249.94604 * 17 16 15 19 19 C 1.38316 * 119.61836 * 176.37744 * 18 17 16 20 20 C 1.38286 * 120.33085 * 359.96841 * 19 18 17 21 21 C 1.38374 * 120.14667 * 0.72252 * 20 19 18 22 22 C 1.38175 * 119.47313 * 67.71017 * 17 16 15 23 23 O 1.34841 * 115.64072 * 179.79802 * 12 11 10 24 24 H 0.96999 * 120.00515 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.36376 * 0.16732 * 10 9 7 26 26 H 1.08002 * 119.38906 * 179.97438 * 11 10 9 27 27 H 1.08001 * 119.49771 * 179.88198 * 14 13 12 28 28 H 1.09005 * 108.57235 * 132.74231 * 15 13 12 29 29 H 1.09007 * 108.57173 * 250.38625 * 15 13 12 30 30 H 1.08004 * 120.19218 * 356.35316 * 18 17 16 31 31 H 1.08002 * 119.83799 * 179.69848 * 19 18 17 32 32 H 1.07993 * 119.92554 * 180.71412 * 20 19 18 33 33 H 1.08007 * 120.25631 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.4902 2.0466 -1.4001 5 1 1.4403 2.6527 0.7001 6 1 3.5404 1.4402 0.6999 7 6 2.0082 -1.2113 -0.0005 8 1 3.0466 -1.2352 -0.2965 9 6 1.3568 -2.4028 0.3858 10 6 0.2268 -2.3563 1.2259 11 6 -0.3815 -3.5166 1.5858 12 6 0.0960 -4.7598 1.1362 13 6 1.2031 -4.8166 0.3081 14 6 1.8277 -3.6455 -0.0622 15 6 1.8148 -6.0754 -0.2507 16 8 1.0194 -7.2270 -0.0764 17 6 0.7933 -7.6883 1.1751 18 6 1.3654 -8.8775 1.6027 19 6 1.1828 -9.2929 2.9093 20 6 0.4353 -8.5292 3.7869 21 6 -0.1481 -7.3498 3.3586 22 6 0.0229 -6.9419 2.0460 23 8 -0.5901 -5.8383 1.5654 24 1 -0.4851 0.8400 0.0004 25 1 -0.1522 -1.4087 1.5793 26 1 -1.2476 -3.4832 2.2301 27 1 2.6933 -3.6853 -0.7069 28 1 1.9900 -5.9324 -1.3170 29 1 2.7758 -6.2404 0.2366 30 1 1.9497 -9.4758 0.9192 31 1 1.6225 -10.2206 3.2446 32 1 0.3065 -8.8539 4.8088 33 1 -0.7326 -6.7521 4.0425 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584617638.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:47 Heat of formation + Delta-G solvation = -15.198720 kcal Electronic energy + Delta-G solvation = -19468.432708 eV Core-core repulsion = 16424.827126 eV Total energy + Delta-G solvation = -3043.605583 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.089 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.71885 -38.11943 -37.40731 -36.48667 -33.70419 -31.18780 -30.44592 -29.89724 -28.73648 -25.68460 -25.17956 -22.83281 -21.87693 -21.03018 -20.58562 -17.95823 -17.49971 -16.95906 -16.27671 -15.55964 -15.33223 -14.99200 -14.50901 -14.21581 -13.90582 -13.66998 -13.27150 -12.65914 -12.58621 -12.20507 -11.94435 -11.85387 -11.53793 -11.44949 -11.22006 -11.07452 -10.69688 -10.36964 -10.05815 -9.64003 -9.47140 -9.13593 -8.64221 -8.20424 -7.63671 -7.27850 -6.92296 -4.46879 1.33723 1.42266 2.49030 2.73382 2.99503 3.00179 3.07026 3.54942 3.82108 4.00640 4.24379 4.54614 5.00730 5.07708 5.38528 5.40541 5.46248 5.60536 5.64174 5.71747 5.82197 5.99979 6.22508 6.32818 6.52687 6.58180 6.65937 6.77106 6.84885 6.96818 7.08410 7.26616 7.40900 7.63275 7.82057 7.88961 8.02027 8.38262 8.63693 8.70774 8.89274 10.02409 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.039273 B = 0.004698 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.780985 B = 5958.027108 C = 6275.991582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.076 3.924 3 Si 0.910 3.090 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.456 4.456 8 H 0.081 0.919 9 C 0.108 3.892 10 C -0.137 4.137 11 C -0.105 4.105 12 C -0.018 4.018 13 C -0.128 4.128 14 C -0.220 4.220 15 C 0.122 3.878 16 O -0.327 6.327 17 C 0.066 3.934 18 C -0.122 4.122 19 C -0.127 4.127 20 C -0.115 4.115 21 C -0.123 4.123 22 C 0.089 3.911 23 O -0.269 6.269 24 H 0.284 0.716 25 H 0.128 0.872 26 H 0.100 0.900 27 H 0.098 0.902 28 H 0.108 0.892 29 H 0.052 0.948 30 H 0.130 0.870 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.399 -9.554 4.610 10.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.485 4.485 8 H 0.099 0.901 9 C 0.105 3.895 10 C -0.156 4.156 11 C -0.124 4.124 12 C -0.059 4.059 13 C -0.129 4.129 14 C -0.240 4.240 15 C 0.047 3.953 16 O -0.244 6.244 17 C 0.022 3.978 18 C -0.141 4.141 19 C -0.145 4.145 20 C -0.133 4.133 21 C -0.142 4.142 22 C 0.045 3.955 23 O -0.182 6.182 24 H 0.095 0.905 25 H 0.146 0.854 26 H 0.118 0.882 27 H 0.117 0.883 28 H 0.126 0.874 29 H 0.070 0.930 30 H 0.147 0.853 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.953 -9.424 4.403 10.584 hybrid contribution 0.494 0.940 -0.019 1.062 sum 2.446 -8.484 4.384 9.858 Atomic orbital electron populations 1.69827 1.07678 1.29694 1.34049 1.25958 0.94754 1.01577 0.91993 0.86277 0.80661 0.80271 0.79386 1.19336 1.19931 1.18332 1.19528 0.98496 0.91185 1.39241 0.90113 1.17491 0.91129 0.92043 0.88820 1.21008 0.98391 0.96503 0.99722 1.20449 1.00313 0.90888 1.00757 1.17878 0.99148 0.83612 1.05257 1.19874 0.97588 0.95531 0.99912 1.20510 1.04134 0.91557 1.07779 1.21298 0.91132 0.81346 1.01481 1.85250 1.70896 1.44583 1.23622 1.19066 0.98401 0.95001 0.85331 1.21167 0.99772 0.97170 0.95949 1.20948 1.00312 1.00260 0.92976 1.21000 0.98070 0.94503 0.99762 1.21076 1.01726 0.98022 0.93332 1.19254 0.95411 0.89067 0.91750 1.83344 1.34905 1.22680 1.77298 0.90509 0.85428 0.88177 0.88345 0.87392 0.92989 0.85253 0.85638 0.85511 0.85011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.59 10.97 55.54 0.61 -18.98 16 2 C 0.08 1.83 5.14 -17.35 -0.09 1.74 16 3 Si 0.91 17.82 29.60 -169.99 -5.03 12.79 16 4 H -0.27 -5.20 7.11 56.52 0.40 -4.79 16 5 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 6 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 7 C -0.46 -11.58 9.04 -37.85 -0.34 -11.93 16 8 H 0.08 1.96 7.91 -52.49 -0.42 1.54 16 9 C 0.11 2.79 5.56 -107.02 -0.60 2.20 16 10 C -0.14 -3.49 8.66 -39.43 -0.34 -3.83 16 11 C -0.11 -2.54 9.75 -39.56 -0.39 -2.93 16 12 C -0.02 -0.42 6.28 -38.66 -0.24 -0.66 16 13 C -0.13 -2.95 5.83 -104.74 -0.61 -3.56 16 14 C -0.22 -5.27 9.18 -38.99 -0.36 -5.63 16 15 C 0.12 2.35 6.15 36.00 0.22 2.57 16 16 O -0.33 -6.51 9.89 -34.74 -0.34 -6.85 16 17 C 0.07 1.23 5.94 -39.43 -0.23 1.00 16 18 C -0.12 -1.79 10.03 -39.38 -0.39 -2.19 16 19 C -0.13 -1.58 10.03 -39.54 -0.40 -1.97 16 20 C -0.12 -1.47 10.05 -39.51 -0.40 -1.87 16 21 C -0.12 -1.95 10.05 -39.43 -0.40 -2.35 16 22 C 0.09 1.74 6.04 -39.50 -0.24 1.50 16 23 O -0.27 -6.11 9.34 -15.53 -0.15 -6.26 16 24 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 25 H 0.13 3.28 6.17 -52.49 -0.32 2.96 16 26 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 27 H 0.10 2.16 7.99 -52.49 -0.42 1.74 16 28 H 0.11 1.86 8.11 -51.93 -0.42 1.44 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 31 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.13 1.89 8.06 -52.48 -0.42 1.47 16 LS Contribution 285.74 15.07 4.31 4.31 Total: -1.00 -28.38 285.74 -8.66 -37.04 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -3.25 Total: 5.87 kcal Atomic # 6 Polarization: -23.11 SS G_CDS: -4.80 Total: -27.91 kcal Atomic # 7 Polarization: -19.59 SS G_CDS: 0.61 Total: -18.98 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -0.49 Total: -13.11 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.38 -8.66 -37.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584617638.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.839 kcal (2) G-P(sol) polarization free energy of solvation -28.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds