Wall clock time and date at job start Mon Mar 30 2020 07:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86800 * 119.99862 * 2 1 4 4 H 1.48506 * 109.47425 * 270.00364 * 3 2 1 5 5 H 1.48501 * 109.47376 * 30.00444 * 3 2 1 6 6 H 1.48500 * 109.47221 * 150.00476 * 3 2 1 7 7 C 1.39874 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00389 * 161.55466 * 7 2 1 9 9 C 1.41183 * 119.99916 * 341.55574 * 7 2 1 10 10 C 1.40889 * 120.36055 * 335.98290 * 9 7 2 11 11 C 1.35854 * 119.26896 * 180.11927 * 10 9 7 12 12 C 1.40569 * 121.23307 * 0.02642 * 11 10 9 13 13 C 1.38364 * 119.97047 * 359.81756 * 12 11 10 14 14 C 1.37797 * 119.24853 * 0.21068 * 13 12 11 15 15 C 1.50693 * 125.51975 * 180.30605 * 13 12 11 16 16 O 1.41037 * 114.03824 * 11.55091 * 15 13 12 17 17 C 1.35290 * 119.14359 * 293.99995 * 16 15 13 18 18 C 1.38714 * 120.56832 * 249.94604 * 17 16 15 19 19 C 1.38316 * 119.61836 * 176.37744 * 18 17 16 20 20 C 1.38286 * 120.33085 * 359.96841 * 19 18 17 21 21 C 1.38374 * 120.14667 * 0.72252 * 20 19 18 22 22 C 1.38175 * 119.47313 * 67.71017 * 17 16 15 23 23 O 1.34841 * 115.64072 * 179.79802 * 12 11 10 24 24 H 0.96999 * 120.00515 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.36376 * 0.16732 * 10 9 7 26 26 H 1.08002 * 119.38906 * 179.97438 * 11 10 9 27 27 H 1.08001 * 119.49771 * 179.88198 * 14 13 12 28 28 H 1.09005 * 108.57235 * 132.74231 * 15 13 12 29 29 H 1.09007 * 108.57173 * 250.38625 * 15 13 12 30 30 H 1.08004 * 120.19218 * 356.35316 * 18 17 16 31 31 H 1.08002 * 119.83799 * 179.69848 * 19 18 17 32 32 H 1.07993 * 119.92554 * 180.71412 * 20 19 18 33 33 H 1.08007 * 120.25631 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.4902 2.0466 -1.4001 5 1 1.4403 2.6527 0.7001 6 1 3.5404 1.4402 0.6999 7 6 2.0082 -1.2113 -0.0005 8 1 3.0466 -1.2352 -0.2965 9 6 1.3568 -2.4028 0.3858 10 6 0.2268 -2.3563 1.2259 11 6 -0.3815 -3.5166 1.5858 12 6 0.0960 -4.7598 1.1362 13 6 1.2031 -4.8166 0.3081 14 6 1.8277 -3.6455 -0.0622 15 6 1.8148 -6.0754 -0.2507 16 8 1.0194 -7.2270 -0.0764 17 6 0.7933 -7.6883 1.1751 18 6 1.3654 -8.8775 1.6027 19 6 1.1828 -9.2929 2.9093 20 6 0.4353 -8.5292 3.7869 21 6 -0.1481 -7.3498 3.3586 22 6 0.0229 -6.9419 2.0460 23 8 -0.5901 -5.8383 1.5654 24 1 -0.4851 0.8400 0.0004 25 1 -0.1522 -1.4087 1.5793 26 1 -1.2476 -3.4832 2.2301 27 1 2.6933 -3.6853 -0.7069 28 1 1.9900 -5.9324 -1.3170 29 1 2.7758 -6.2404 0.2366 30 1 1.9497 -9.4758 0.9192 31 1 1.6225 -10.2206 3.2446 32 1 0.3065 -8.8539 4.8088 33 1 -0.7326 -6.7521 4.0425 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584617638.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:47 Heat of formation + Delta-G solvation = -29.328042 kcal Electronic energy + Delta-G solvation = -19469.045401 eV Core-core repulsion = 16424.827126 eV Total energy + Delta-G solvation = -3044.218276 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.089 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.18365 -39.70005 -38.89256 -38.02211 -35.49737 -32.84008 -31.95741 -31.34605 -30.22712 -27.28129 -26.97787 -24.14263 -23.30145 -22.74525 -22.24330 -19.61374 -19.01413 -18.51598 -17.71196 -17.18688 -16.98469 -16.38678 -15.91204 -15.67186 -15.54319 -14.95350 -14.91593 -14.39692 -14.07193 -13.87080 -13.42090 -13.25045 -13.07291 -12.89885 -12.79914 -12.53011 -12.29989 -12.06180 -11.74900 -11.29561 -11.08558 -10.89530 -9.86158 -9.61964 -9.41054 -9.08357 -8.72800 -6.38119 0.11790 0.23146 0.69427 0.85462 1.38696 1.45332 1.54456 2.18090 2.32371 2.44511 2.65291 3.05818 3.55274 3.75005 3.90310 4.11481 4.13811 4.25174 4.34953 4.42953 4.44526 4.52367 4.78362 4.90465 4.93607 5.10010 5.22266 5.28064 5.37211 5.43894 5.45340 5.55753 5.72622 5.84464 5.92869 6.12308 6.40209 6.51726 6.81281 6.82158 7.18515 8.24936 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.039273 B = 0.004698 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.780985 B = 5958.027108 C = 6275.991582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.036 3.964 3 Si 0.986 3.014 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.257 1.257 7 C -0.488 4.488 8 H 0.084 0.916 9 C 0.078 3.922 10 C -0.156 4.156 11 C -0.116 4.116 12 C -0.027 4.027 13 C -0.135 4.135 14 C -0.229 4.229 15 C 0.123 3.877 16 O -0.340 6.340 17 C 0.034 3.966 18 C -0.121 4.121 19 C -0.108 4.108 20 C -0.101 4.101 21 C -0.132 4.132 22 C 0.040 3.960 23 O -0.288 6.288 24 H 0.292 0.708 25 H 0.117 0.883 26 H 0.110 0.890 27 H 0.114 0.886 28 H 0.126 0.874 29 H 0.070 0.930 30 H 0.154 0.846 31 H 0.173 0.827 32 H 0.170 0.830 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.805 -11.532 5.685 13.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.180 4.180 3 Si 0.806 3.194 4 H -0.185 1.185 5 H -0.190 1.190 6 H -0.180 1.180 7 C -0.516 4.516 8 H 0.102 0.898 9 C 0.076 3.924 10 C -0.175 4.175 11 C -0.135 4.135 12 C -0.068 4.068 13 C -0.137 4.137 14 C -0.248 4.248 15 C 0.049 3.951 16 O -0.256 6.256 17 C -0.010 4.010 18 C -0.139 4.139 19 C -0.125 4.125 20 C -0.119 4.119 21 C -0.151 4.151 22 C -0.003 4.003 23 O -0.203 6.203 24 H 0.103 0.897 25 H 0.134 0.866 26 H 0.128 0.872 27 H 0.132 0.868 28 H 0.144 0.856 29 H 0.088 0.912 30 H 0.171 0.829 31 H 0.191 0.809 32 H 0.187 0.813 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.351 -11.435 5.484 13.117 hybrid contribution 0.014 1.299 -0.238 1.321 sum 3.365 -10.136 5.246 11.899 Atomic orbital electron populations 1.69879 1.09221 1.31101 1.34421 1.26844 0.95454 1.04811 0.90847 0.85141 0.79119 0.75469 0.79648 1.18533 1.19037 1.18024 1.19803 0.98900 0.92137 1.40794 0.89762 1.17859 0.91757 0.93281 0.89524 1.20953 0.99270 0.96446 1.00844 1.20625 1.00693 0.91126 1.01030 1.18119 0.99168 0.84356 1.05198 1.20318 0.97066 0.97101 0.99170 1.20735 1.04723 0.91410 1.07981 1.21355 0.91350 0.79967 1.02475 1.85228 1.71270 1.44241 1.24867 1.19470 0.99873 0.96655 0.85022 1.21527 0.99213 0.95644 0.97498 1.21540 0.98282 1.01144 0.91558 1.21520 0.95974 0.92610 1.01782 1.21353 1.02153 0.99537 0.92017 1.19734 0.98300 0.88486 0.93808 1.83296 1.35820 1.23227 1.77926 0.89714 0.86567 0.87214 0.86847 0.85600 0.91166 0.82855 0.80918 0.81257 0.84438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.14 10.97 21.82 0.24 -41.90 16 2 C 0.04 1.79 5.14 85.23 0.44 2.22 16 3 Si 0.99 36.74 29.60 68.60 2.03 38.77 16 4 H -0.26 -9.34 7.11 99.48 0.71 -8.64 16 5 H -0.27 -9.45 7.11 99.48 0.71 -8.74 16 6 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 7 C -0.49 -25.60 9.04 23.39 0.21 -25.39 16 8 H 0.08 4.19 7.91 -2.91 -0.02 4.17 16 9 C 0.08 4.23 5.56 -21.42 -0.12 4.11 16 10 C -0.16 -8.38 8.66 22.37 0.19 -8.19 16 11 C -0.12 -5.91 9.75 22.29 0.22 -5.69 16 12 C -0.03 -1.34 6.28 22.87 0.14 -1.19 16 13 C -0.14 -6.40 5.83 -19.94 -0.12 -6.52 16 14 C -0.23 -11.30 9.18 22.65 0.21 -11.09 16 15 C 0.12 4.71 6.15 71.23 0.44 5.15 16 16 O -0.34 -13.39 9.89 -67.54 -0.67 -14.06 16 17 C 0.03 1.22 5.94 22.37 0.13 1.35 16 18 C -0.12 -3.14 10.03 22.40 0.22 -2.92 16 19 C -0.11 -2.12 10.03 22.30 0.22 -1.90 16 20 C -0.10 -2.15 10.05 22.31 0.22 -1.92 16 21 C -0.13 -4.00 10.05 22.37 0.22 -3.78 16 22 C 0.04 1.55 6.04 22.32 0.13 1.68 16 23 O -0.29 -13.59 9.34 1.19 0.01 -13.58 16 24 H 0.29 13.46 8.30 -92.71 -0.77 12.69 16 25 H 0.12 6.37 6.17 -2.91 -0.02 6.35 16 26 H 0.11 5.14 8.06 -2.91 -0.02 5.12 16 27 H 0.11 5.07 7.99 -2.91 -0.02 5.05 16 28 H 0.13 4.27 8.11 -2.38 -0.02 4.25 16 29 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 30 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 31 H 0.17 1.87 8.06 -2.91 -0.02 1.84 16 32 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 33 H 0.14 3.85 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -65.36 285.74 5.52 -59.84 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: 1.13 Total: 24.99 kcal Atomic # 6 Polarization: -56.85 SS G_CDS: 2.78 Total: -54.07 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: 0.24 Total: -41.90 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.66 Total: -27.64 kcal Atomic # 14 Polarization: 36.74 SS G_CDS: 2.03 Total: 38.77 kcal Total: -65.36 5.52 -59.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584617638.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.511 kcal (2) G-P(sol) polarization free energy of solvation -65.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds