Wall clock time and date at job start Mon Mar 30 2020 07:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99961 * 2 1 4 4 H 1.48505 * 109.47476 * 270.00323 * 3 2 1 5 5 H 1.48495 * 109.47124 * 30.00510 * 3 2 1 6 6 H 1.48506 * 109.47108 * 150.00271 * 3 2 1 7 7 C 1.37876 * 120.00316 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99963 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00377 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47310 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46947 * 180.02562 * 10 9 7 12 12 C 1.50706 * 109.46896 * 179.97438 * 11 10 9 13 13 O 1.21274 * 120.00036 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99907 * 179.97438 * 12 11 10 15 15 C 1.39414 * 119.99997 * 185.08542 * 14 12 11 16 16 C 1.38980 * 119.69011 * 174.93006 * 15 14 12 17 17 C 1.38505 * 119.08394 * 179.74595 * 16 15 14 18 18 Cl 1.73599 * 120.76445 * 180.23218 * 17 16 15 19 19 C 1.38980 * 118.46897 * 0.25447 * 17 16 15 20 20 C 1.38016 * 119.29443 * 359.97438 * 19 17 16 21 21 N 1.31953 * 120.86139 * 0.02562 * 20 19 17 22 22 H 0.97003 * 120.00008 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47484 * 59.99781 * 9 7 2 24 24 H 1.09005 * 109.46987 * 299.99686 * 9 7 2 25 25 H 1.08995 * 109.47046 * 60.00122 * 10 9 7 26 26 H 1.09005 * 109.46756 * 299.99725 * 10 9 7 27 27 H 1.09002 * 109.47809 * 59.99702 * 11 10 9 28 28 H 1.09005 * 109.47025 * 299.99385 * 11 10 9 29 29 H 0.97003 * 120.00137 * 5.08209 * 14 12 11 30 30 H 1.08000 * 120.45507 * 0.02562 * 16 15 14 31 31 H 1.08003 * 120.35370 * 179.97438 * 19 17 16 32 32 H 1.07999 * 119.57222 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6366 -0.0023 11 6 5.5515 -2.6365 -0.0022 12 6 6.0539 -4.0573 -0.0027 13 8 5.2659 -4.9791 -0.0036 14 7 7.3790 -4.3036 -0.0033 15 6 7.8445 -5.6133 -0.1108 16 6 9.2095 -5.8521 -0.2172 17 6 9.6586 -7.1584 -0.3180 18 17 11.3544 -7.5070 -0.4469 19 6 8.7204 -8.1837 -0.3140 20 6 7.3799 -7.8720 -0.2101 21 7 6.9821 -6.6174 -0.1154 22 1 -0.4850 0.8401 0.0004 23 1 3.8753 -0.6804 0.8888 24 1 3.8745 -0.6800 -0.8912 25 1 3.6579 -3.1498 -0.8924 26 1 3.6586 -3.1509 0.8876 27 1 5.9149 -2.1233 0.8881 28 1 5.9149 -2.1220 -0.8919 29 1 8.0087 -3.5695 0.0710 30 1 9.9106 -5.0306 -0.2167 31 1 9.0368 -9.2134 -0.3915 32 1 6.6470 -8.6652 -0.2061 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594023726.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:58 Heat of formation + Delta-G solvation = -7.370392 kcal Electronic energy + Delta-G solvation = -16916.644253 eV Core-core repulsion = 13903.238034 eV Total energy + Delta-G solvation = -3013.406219 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.99867 -39.18404 -37.11606 -35.10803 -34.32160 -32.42415 -32.11715 -30.57329 -28.36951 -24.67240 -24.07550 -22.89526 -20.63409 -19.91775 -18.48136 -17.23844 -16.70503 -16.48458 -15.91553 -15.76572 -15.04207 -14.64262 -14.27868 -14.02847 -13.63673 -13.50600 -12.74138 -12.65696 -12.58792 -12.04518 -11.70843 -11.50868 -11.03135 -10.89994 -10.79984 -10.29558 -9.95547 -9.82637 -9.76385 -9.69541 -9.23815 -9.10486 -8.60548 -8.51912 -6.01352 -3.99393 0.70795 0.76854 1.50361 2.69915 2.73271 3.30803 3.38044 3.40361 3.54868 4.13123 4.46185 4.50845 4.56528 4.63136 4.99504 5.16691 5.26582 5.31713 5.46727 5.50230 5.58291 5.86712 6.01706 6.40174 6.51543 6.63830 6.88642 6.99752 7.34766 7.42777 7.77641 7.81568 8.24415 8.58167 9.05438 9.60415 11.12329 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.053550 B = 0.002958 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.751942 B = 9463.276453 C = 9953.669039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.089 4.089 11 C -0.139 4.139 12 C 0.501 3.499 13 O -0.461 6.461 14 N -0.667 5.667 15 C 0.384 3.616 16 C -0.209 4.209 17 C 0.036 3.964 18 Cl -0.054 7.054 19 C -0.206 4.206 20 C 0.152 3.848 21 N -0.473 5.473 22 H 0.263 0.737 23 H 0.016 0.984 24 H 0.011 0.989 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.418 0.582 30 H 0.146 0.854 31 H 0.145 0.855 32 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.649 -13.071 -0.496 27.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.137 4.137 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.558 4.558 8 H 0.091 0.909 9 C -0.051 4.051 10 C -0.127 4.127 11 C -0.179 4.179 12 C 0.288 3.712 13 O -0.328 6.328 14 N -0.314 5.314 15 C 0.152 3.848 16 C -0.234 4.234 17 C 0.001 3.999 18 Cl -0.025 7.025 19 C -0.229 4.229 20 C -0.007 4.007 21 N -0.188 5.188 22 H 0.072 0.928 23 H 0.034 0.966 24 H 0.029 0.971 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.255 0.745 30 H 0.163 0.837 31 H 0.163 0.837 32 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 23.055 -13.353 -0.447 26.646 hybrid contribution 1.874 1.100 -0.073 2.174 sum 24.928 -12.253 -0.520 27.782 Atomic orbital electron populations 1.69922 1.06318 1.26813 1.51250 1.25054 0.94746 0.99160 0.94691 0.86758 0.80304 0.83647 0.78406 1.20349 1.21452 1.19045 1.21154 0.89488 0.94580 1.50537 0.90898 1.19602 0.97385 0.91987 0.96151 1.21301 0.88793 0.99809 1.02763 1.21927 1.01004 0.90861 1.04077 1.21563 0.80681 0.93259 0.75723 1.90811 1.53824 1.46061 1.42072 1.44025 1.09608 1.05237 1.72521 1.18475 0.87799 0.86438 0.92115 1.21324 0.95068 0.96830 1.10155 1.20937 0.85921 0.94008 0.99025 1.98397 1.12880 1.95186 1.96045 1.22003 0.93602 1.00005 1.07246 1.22790 0.93507 0.92951 0.91450 1.67789 1.37031 0.99197 1.14765 0.92770 0.96604 0.97055 0.91914 0.91884 0.88980 0.88936 0.74513 0.83664 0.83748 0.81376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.26 13.96 55.43 0.77 -27.49 16 2 C 0.06 1.89 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 7 C -0.52 -15.05 9.66 -34.44 -0.33 -15.39 16 8 H 0.07 2.30 7.99 -52.49 -0.42 1.88 16 9 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 10 C -0.09 -1.78 4.44 -26.73 -0.12 -1.90 16 11 C -0.14 -2.01 5.70 -27.88 -0.16 -2.17 16 12 C 0.50 7.55 7.79 -10.98 -0.09 7.46 16 13 O -0.46 -8.98 14.25 5.56 0.08 -8.90 16 14 N -0.67 -7.47 5.39 -11.43 -0.06 -7.53 16 15 C 0.38 4.64 7.42 -154.70 -1.15 3.49 16 16 C -0.21 -1.92 9.76 -39.21 -0.38 -2.30 16 17 C 0.04 0.32 6.37 -39.21 -0.25 0.07 16 18 Cl -0.05 -0.42 29.02 -51.86 -1.50 -1.92 16 19 C -0.21 -1.75 9.93 -39.39 -0.39 -2.14 16 20 C 0.15 1.58 11.17 -17.58 -0.20 1.38 16 21 N -0.47 -6.69 7.89 -12.38 -0.10 -6.79 16 22 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 23 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 24 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 25 H 0.06 1.34 8.10 -51.93 -0.42 0.92 16 26 H 0.06 1.35 8.10 -51.93 -0.42 0.93 16 27 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.42 2.89 8.70 -40.82 -0.36 2.54 16 30 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 31 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 32 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 296.90 15.07 4.47 4.47 Total: -1.00 -35.36 296.90 -7.94 -43.30 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: -3.66 Total: -1.91 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -3.27 Total: -10.13 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: 0.61 Total: -41.81 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.08 Total: -8.90 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -1.50 Total: -1.92 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -35.36 -7.94 -43.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594023726.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.934 kcal (2) G-P(sol) polarization free energy of solvation -35.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds