Wall clock time and date at job start Mon Mar 30 2020 07:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99961 * 2 1 4 4 H 1.48505 * 109.47476 * 270.00323 * 3 2 1 5 5 H 1.48495 * 109.47124 * 30.00510 * 3 2 1 6 6 H 1.48506 * 109.47108 * 150.00271 * 3 2 1 7 7 C 1.37876 * 120.00316 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99963 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00377 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47310 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46947 * 180.02562 * 10 9 7 12 12 C 1.50706 * 109.46896 * 179.97438 * 11 10 9 13 13 O 1.21274 * 120.00036 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99907 * 179.97438 * 12 11 10 15 15 C 1.39414 * 119.99997 * 185.08542 * 14 12 11 16 16 C 1.38980 * 119.69011 * 174.93006 * 15 14 12 17 17 C 1.38505 * 119.08394 * 179.74595 * 16 15 14 18 18 Cl 1.73599 * 120.76445 * 180.23218 * 17 16 15 19 19 C 1.38980 * 118.46897 * 0.25447 * 17 16 15 20 20 C 1.38016 * 119.29443 * 359.97438 * 19 17 16 21 21 N 1.31953 * 120.86139 * 0.02562 * 20 19 17 22 22 H 0.97003 * 120.00008 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47484 * 59.99781 * 9 7 2 24 24 H 1.09005 * 109.46987 * 299.99686 * 9 7 2 25 25 H 1.08995 * 109.47046 * 60.00122 * 10 9 7 26 26 H 1.09005 * 109.46756 * 299.99725 * 10 9 7 27 27 H 1.09002 * 109.47809 * 59.99702 * 11 10 9 28 28 H 1.09005 * 109.47025 * 299.99385 * 11 10 9 29 29 H 0.97003 * 120.00137 * 5.08209 * 14 12 11 30 30 H 1.08000 * 120.45507 * 0.02562 * 16 15 14 31 31 H 1.08003 * 120.35370 * 179.97438 * 19 17 16 32 32 H 1.07999 * 119.57222 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6366 -0.0023 11 6 5.5515 -2.6365 -0.0022 12 6 6.0539 -4.0573 -0.0027 13 8 5.2659 -4.9791 -0.0036 14 7 7.3790 -4.3036 -0.0033 15 6 7.8445 -5.6133 -0.1108 16 6 9.2095 -5.8521 -0.2172 17 6 9.6586 -7.1584 -0.3180 18 17 11.3544 -7.5070 -0.4469 19 6 8.7204 -8.1837 -0.3140 20 6 7.3799 -7.8720 -0.2101 21 7 6.9821 -6.6174 -0.1154 22 1 -0.4850 0.8401 0.0004 23 1 3.8753 -0.6804 0.8888 24 1 3.8745 -0.6800 -0.8912 25 1 3.6579 -3.1498 -0.8924 26 1 3.6586 -3.1509 0.8876 27 1 5.9149 -2.1233 0.8881 28 1 5.9149 -2.1220 -0.8919 29 1 8.0087 -3.5695 0.0710 30 1 9.9106 -5.0306 -0.2167 31 1 9.0368 -9.2134 -0.3915 32 1 6.6470 -8.6652 -0.2061 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594023726.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:52 Heat of formation + Delta-G solvation = -31.339865 kcal Electronic energy + Delta-G solvation = -16917.683647 eV Core-core repulsion = 13903.238034 eV Total energy + Delta-G solvation = -3014.445614 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.88074 -40.21219 -37.78355 -36.28831 -35.89409 -34.13486 -33.16558 -31.56790 -29.95529 -26.13436 -24.91104 -24.08450 -22.09565 -21.26443 -19.40318 -18.80952 -18.19077 -17.27563 -16.95616 -16.78307 -16.23326 -15.84863 -15.70897 -14.94949 -14.80205 -14.73576 -14.66892 -13.82452 -13.44827 -13.38405 -13.14720 -12.71322 -12.47836 -12.14236 -11.83287 -11.78271 -11.72349 -11.47617 -11.32406 -11.20550 -10.73647 -10.54359 -10.16884 -9.42638 -8.26341 -6.32114 -0.05205 0.02278 0.82257 1.40006 1.43739 1.55675 1.64378 1.86247 2.40564 2.74630 3.08955 3.32614 3.74898 3.87156 3.89606 4.04217 4.22597 4.26445 4.48770 4.57504 4.77721 4.91083 4.92565 4.96837 5.04875 5.11613 5.55852 5.61858 5.62472 5.69491 6.17159 6.32523 6.77048 6.91361 7.29882 7.32383 8.91450 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.053550 B = 0.002958 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.751942 B = 9463.276453 C = 9953.669039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.005 4.005 3 Si 0.963 3.037 4 H -0.264 1.264 5 H -0.288 1.288 6 H -0.233 1.233 7 C -0.540 4.540 8 H 0.018 0.982 9 C -0.009 4.009 10 C -0.082 4.082 11 C -0.126 4.126 12 C 0.504 3.496 13 O -0.519 6.519 14 N -0.649 5.649 15 C 0.356 3.644 16 C -0.193 4.193 17 C 0.027 3.973 18 Cl -0.039 7.039 19 C -0.190 4.190 20 C 0.134 3.866 21 N -0.523 5.523 22 H 0.266 0.734 23 H 0.033 0.967 24 H 0.031 0.969 25 H 0.036 0.964 26 H 0.036 0.964 27 H 0.125 0.875 28 H 0.124 0.876 29 H 0.439 0.561 30 H 0.175 0.825 31 H 0.171 0.829 32 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.819 -11.754 -0.563 31.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.201 4.201 3 Si 0.785 3.215 4 H -0.189 1.189 5 H -0.214 1.214 6 H -0.155 1.155 7 C -0.578 4.578 8 H 0.036 0.964 9 C -0.046 4.046 10 C -0.121 4.121 11 C -0.165 4.165 12 C 0.292 3.708 13 O -0.390 6.390 14 N -0.299 5.299 15 C 0.125 3.875 16 C -0.217 4.217 17 C -0.009 4.009 18 Cl -0.010 7.010 19 C -0.212 4.212 20 C -0.024 4.024 21 N -0.238 5.238 22 H 0.075 0.925 23 H 0.051 0.949 24 H 0.049 0.951 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.143 0.857 28 H 0.142 0.858 29 H 0.280 0.720 30 H 0.192 0.808 31 H 0.189 0.811 32 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 27.304 -12.054 -0.513 29.851 hybrid contribution 0.578 0.510 -0.063 0.774 sum 27.883 -11.545 -0.577 30.184 Atomic orbital electron populations 1.70114 1.08772 1.28274 1.52775 1.26226 0.95748 1.04226 0.93884 0.85478 0.79739 0.76913 0.79371 1.18938 1.21411 1.15549 1.21578 0.92848 0.92785 1.50631 0.96363 1.19545 0.93338 0.94238 0.97496 1.21060 0.93375 0.97265 1.00356 1.21761 0.96302 0.91289 1.07188 1.21597 0.81607 0.92822 0.74818 1.90801 1.55607 1.47530 1.45107 1.43655 1.08598 1.06023 1.71583 1.18679 0.88766 0.86192 0.93895 1.21525 0.94143 0.97949 1.08100 1.21098 0.86789 0.94108 0.98857 1.98408 1.11517 1.95093 1.95936 1.22264 0.92694 1.01362 1.04880 1.23088 0.94930 0.92327 0.92045 1.67671 1.39196 1.00871 1.16103 0.92544 0.94881 0.95083 0.94547 0.94480 0.85710 0.85751 0.71998 0.80751 0.81107 0.80080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.01 13.96 21.45 0.30 -61.71 16 2 C -0.01 -0.31 5.47 84.65 0.46 0.16 16 3 Si 0.96 43.50 27.47 68.60 1.88 45.38 16 4 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.23 -9.23 6.54 99.48 0.65 -8.58 16 7 C -0.54 -32.35 9.66 25.60 0.25 -32.11 16 8 H 0.02 1.23 7.99 -2.91 -0.02 1.21 16 9 C -0.01 -0.40 4.04 29.85 0.12 -0.28 16 10 C -0.08 -3.34 4.44 30.60 0.14 -3.21 16 11 C -0.13 -3.33 5.70 29.85 0.17 -3.16 16 12 C 0.50 14.78 7.79 87.66 0.68 15.46 16 13 O -0.52 -20.97 14.25 -3.01 -0.04 -21.02 16 14 N -0.65 -13.29 5.39 -308.48 -1.66 -14.95 16 15 C 0.36 8.15 7.42 132.89 0.99 9.14 16 16 C -0.19 -3.05 9.76 22.51 0.22 -2.83 16 17 C 0.03 0.41 6.37 22.51 0.14 0.55 16 18 Cl -0.04 -0.48 29.02 -2.72 -0.08 -0.56 16 19 C -0.19 -2.86 9.93 22.40 0.22 -2.64 16 20 C 0.13 2.73 11.17 84.62 0.95 3.68 16 21 N -0.52 -14.87 7.89 -193.10 -1.52 -16.39 16 22 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 23 H 0.03 1.41 7.20 -2.39 -0.02 1.39 16 24 H 0.03 1.31 7.57 -2.38 -0.02 1.29 16 25 H 0.04 1.62 8.10 -2.39 -0.02 1.60 16 26 H 0.04 1.65 8.10 -2.38 -0.02 1.63 16 27 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 28 H 0.12 2.56 8.14 -2.38 -0.02 2.54 16 29 H 0.44 4.58 8.70 -92.71 -0.81 3.77 16 30 H 0.18 1.58 8.06 -2.91 -0.02 1.56 16 31 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 32 H 0.18 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -82.36 296.90 3.49 -78.87 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: 0.28 Total: 5.62 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: 4.34 Total: -15.24 kcal Atomic # 7 Polarization: -90.17 SS G_CDS: -2.89 Total: -93.05 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.04 Total: -21.02 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 1.88 Total: 45.38 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -0.08 Total: -0.56 kcal Total: -82.36 3.49 -78.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594023726.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.527 kcal (2) G-P(sol) polarization free energy of solvation -82.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds