Wall clock time and date at job start Mon Mar 30 2020 08:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00059 * 2 1 4 4 H 1.48501 * 109.47409 * 269.99917 * 3 2 1 5 5 H 1.48498 * 109.47266 * 30.00260 * 3 2 1 6 6 H 1.48509 * 109.47002 * 149.99898 * 3 2 1 7 7 C 1.37882 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99931 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99856 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46826 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46925 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.47552 * 180.02562 * 11 10 9 13 13 N 1.31126 * 126.55130 * 90.24287 * 12 11 10 14 14 C 1.34499 * 105.61320 * 180.12696 * 13 12 11 15 15 C 1.50695 * 126.28697 * 179.90526 * 14 13 12 16 16 H 1.09000 * 110.99361 * 18.92988 * 15 14 13 17 17 C 1.55155 * 111.13382 * 254.71555 * 15 14 13 18 18 C 1.52937 * 108.96227 * 200.61059 * 17 15 14 19 19 C 1.53707 * 112.49345 * 30.09705 * 18 17 15 20 20 S 1.83401 * 104.96737 * 357.17785 * 19 18 17 21 21 N 1.29949 * 107.42236 * 359.64761 * 14 13 12 22 22 O 1.21296 * 110.25226 * 0.22176 * 21 14 13 23 23 H 0.97000 * 120.00001 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46528 * 60.00046 * 9 7 2 25 25 H 1.08994 * 109.47191 * 300.00217 * 9 7 2 26 26 H 1.08994 * 109.47167 * 59.99849 * 10 9 7 27 27 H 1.09004 * 109.47236 * 299.99947 * 10 9 7 28 28 H 1.09001 * 109.47318 * 59.99483 * 11 10 9 29 29 H 1.09004 * 109.46966 * 299.99924 * 11 10 9 30 30 H 1.09000 * 109.60413 * 80.67985 * 17 15 14 31 31 H 1.09000 * 109.60080 * 320.53768 * 17 15 14 32 32 H 1.09008 * 108.88853 * 269.30488 * 18 17 15 33 33 H 1.09001 * 108.78004 * 150.81670 * 18 17 15 34 34 H 1.09004 * 110.34318 * 116.04680 * 19 18 17 35 35 H 1.09002 * 110.34722 * 238.30606 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4594 -6.1326 -0.0005 13 7 2.9627 -6.7291 1.0531 14 6 3.7830 -7.6808 0.5731 15 6 4.6055 -8.6441 1.3894 16 1 4.2256 -8.7157 2.4085 17 6 6.1056 -8.2479 1.3782 18 6 6.9453 -9.4706 1.7511 19 6 6.2864 -10.7904 1.3193 20 16 4.6767 -10.2999 0.5901 21 7 3.7318 -7.6205 -0.7240 22 8 2.9770 -6.7377 -1.0738 23 1 -0.4850 0.8400 -0.0004 24 1 0.6240 -2.5566 -0.8903 25 1 0.6247 -2.5571 0.8896 26 1 2.8719 -3.6043 0.8894 27 1 2.8719 -3.6043 -0.8905 28 1 0.8538 -5.0445 -0.8913 29 1 0.8533 -5.0450 0.8886 30 1 6.2788 -7.4510 2.1013 31 1 6.3850 -7.9022 0.3829 32 1 7.0878 -9.4844 2.8318 33 1 7.9191 -9.3879 1.2685 34 1 6.9016 -11.2951 0.5744 35 1 6.1298 -11.4363 2.1833 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594530410.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:21:53 Heat of formation + Delta-G solvation = 43.928618 kcal Electronic energy + Delta-G solvation = -17391.797371 eV Core-core repulsion = 14518.492444 eV Total energy + Delta-G solvation = -2873.304926 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -45.49042 -37.04055 -35.78225 -34.92700 -33.03734 -31.52980 -29.88591 -27.77834 -26.04956 -24.30671 -23.32156 -21.89165 -20.79851 -20.27372 -17.94228 -17.55511 -16.97634 -16.32532 -15.91996 -14.88342 -14.69747 -14.49752 -14.28515 -14.10762 -13.37984 -12.74004 -12.62940 -12.55785 -12.31443 -12.18454 -12.08245 -11.49833 -11.33338 -11.12234 -10.96475 -10.88845 -10.85772 -10.60106 -10.27288 -9.86958 -9.85324 -9.41502 -9.14023 -8.39609 -8.01595 -6.04839 -4.07381 1.07328 1.41619 1.89608 2.35852 2.98669 3.30167 3.36703 3.39847 3.44221 4.02038 4.16985 4.33581 4.42973 4.58201 4.62269 4.71468 5.03944 5.23880 5.27134 5.31602 5.41823 5.49546 5.50614 5.61186 5.67078 5.68140 6.02293 6.07650 6.46937 6.61119 6.92713 7.58949 7.70506 7.93615 8.25233 8.35042 8.98841 9.57125 11.06461 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.040048 B = 0.003154 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.001913 B = 8874.818761 C = 9311.519710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.106 4.106 11 C -0.034 4.034 12 C 0.207 3.793 13 N -0.484 5.484 14 C 0.173 3.827 15 C 0.052 3.948 16 H 0.126 0.874 17 C -0.119 4.119 18 C -0.126 4.126 19 C -0.076 4.076 20 S -0.253 6.253 21 N -0.367 5.367 22 O 0.079 5.921 23 H 0.261 0.739 24 H 0.021 0.979 25 H 0.021 0.979 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.756 -19.336 3.296 22.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.145 4.145 11 C -0.073 4.073 12 C -0.012 4.012 13 N -0.218 5.218 14 C -0.100 4.100 15 C -0.078 4.078 16 H 0.144 0.856 17 C -0.159 4.159 18 C -0.164 4.164 19 C -0.224 4.224 20 S -0.027 6.027 21 N -0.075 5.075 22 O 0.019 5.981 23 H 0.071 0.929 24 H 0.040 0.960 25 H 0.039 0.961 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.119 0.881 29 H 0.126 0.874 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.120 0.880 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.372 -20.451 2.471 23.063 hybrid contribution 1.073 1.608 0.738 2.069 sum 11.445 -18.843 3.209 22.278 Atomic orbital electron populations 1.69949 1.06036 1.26740 1.50629 1.25005 0.94857 0.99279 0.95209 0.86589 0.79853 0.83400 0.78142 1.20623 1.21190 1.19877 1.21195 0.93074 0.90898 1.50920 0.92635 1.19104 0.93776 0.90775 0.97772 1.21740 0.99583 0.91622 1.01553 1.20685 0.93398 0.87438 1.05737 1.29369 0.95991 0.96065 0.79806 1.71896 1.12078 1.08723 1.29060 1.24660 0.99162 0.97771 0.88441 1.22065 0.96131 0.90286 0.99328 0.85564 1.22509 0.89907 0.99025 1.04502 1.21928 1.00186 0.91563 1.02761 1.24003 0.94856 1.00072 1.03508 1.88186 1.29675 1.18948 1.65927 1.74685 1.10805 1.06977 1.14984 1.85331 1.42631 1.34087 1.36072 0.92905 0.96037 0.96058 0.92350 0.92509 0.88111 0.87366 0.89030 0.89867 0.90408 0.89760 0.87999 0.88793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.11 -2.02 5.14 -26.73 -0.14 -2.16 16 11 C -0.03 -0.51 5.84 -27.88 -0.16 -0.67 16 12 C 0.21 3.28 7.77 -13.06 -0.10 3.18 16 13 N -0.48 -7.90 11.55 -9.87 -0.11 -8.01 16 14 C 0.17 2.63 7.07 -156.37 -1.10 1.53 16 15 C 0.05 0.61 3.87 -26.74 -0.10 0.51 16 16 H 0.13 1.34 8.14 -51.93 -0.42 0.92 16 17 C -0.12 -1.11 5.79 -25.62 -0.15 -1.26 16 18 C -0.13 -0.83 6.33 -26.40 -0.17 -1.00 16 19 C -0.08 -0.55 7.38 37.52 0.28 -0.27 16 20 S -0.25 -2.97 22.51 -107.50 -2.42 -5.39 16 21 N -0.37 -5.99 11.90 30.90 0.37 -5.63 16 22 O 0.08 1.28 11.31 18.10 0.20 1.48 16 23 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 24 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 30 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 0.89 8.05 -51.93 -0.42 0.47 16 32 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 311.95 15.07 4.70 4.70 Total: -1.00 -30.87 311.95 -8.78 -39.65 By element: Atomic # 1 Polarization: 0.23 SS G_CDS: -5.03 Total: -4.81 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: -2.20 Total: -12.82 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.99 Total: -39.03 kcal Atomic # 8 Polarization: 1.28 SS G_CDS: 0.20 Total: 1.48 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -2.97 SS G_CDS: -2.42 Total: -5.39 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.87 -8.78 -39.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594530410.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.577 kcal (2) G-P(sol) polarization free energy of solvation -30.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds