Wall clock time and date at job start Mon Mar 30 2020 07:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76199 * 103.00071 * 2 1 4 4 C 1.38994 * 120.07689 * 359.72516 * 3 2 1 5 5 C 1.38068 * 119.91389 * 179.69620 * 4 3 2 6 6 C 1.38327 * 120.08042 * 0.60140 * 5 4 3 7 7 C 1.38284 * 120.15824 * 359.67516 * 6 5 4 8 8 C 1.50702 * 119.95824 * 180.02562 * 7 6 5 9 9 S 1.81406 * 109.47238 * 269.98050 * 8 7 6 10 10 C 1.81396 * 102.99901 * 179.97438 * 9 8 7 11 11 C 1.53004 * 109.47003 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.47499 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99514 * 0.02562 * 12 11 10 14 14 C 1.37870 * 120.00203 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00350 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00014 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47164 * 60.00344 * 16 14 12 18 18 H 1.48499 * 109.47366 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47195 * 300.00285 * 16 14 12 20 20 C 1.38101 * 120.08274 * 0.02562 * 7 6 5 21 21 H 1.09000 * 109.46946 * 60.00083 * 1 2 3 22 22 H 1.08999 * 109.47514 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47085 * 299.99567 * 1 2 3 24 24 H 1.07992 * 120.04419 * 0.02562 * 4 3 2 25 25 H 1.08001 * 119.95913 * 180.27625 * 5 4 3 26 26 H 1.07991 * 119.92207 * 179.69745 * 6 5 4 27 27 H 1.09002 * 109.47215 * 29.97755 * 8 7 6 28 28 H 1.08996 * 109.47104 * 149.97625 * 8 7 6 29 29 H 1.08996 * 109.47077 * 299.99702 * 10 9 8 30 30 H 1.09002 * 109.47028 * 60.00056 * 10 9 8 31 31 H 1.09002 * 109.46762 * 300.00432 * 11 10 9 32 32 H 1.08996 * 109.46902 * 59.99848 * 11 10 9 33 33 H 0.96991 * 120.00489 * 179.97438 * 15 14 12 34 34 H 1.07998 * 120.03915 * 180.02562 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1951 2.6661 -0.0058 5 6 1.5095 4.0105 0.0006 6 6 2.8329 4.4131 0.0001 7 6 3.8455 3.4713 0.0001 8 6 5.2858 3.9149 0.0002 9 16 5.8639 4.0925 -1.7101 10 6 7.5862 4.6239 -1.5055 11 6 8.2263 4.8200 -2.8813 12 6 9.6569 5.2621 -2.7115 13 1 10.0686 5.3899 -1.7212 14 6 10.4405 5.5023 -3.8201 15 7 9.9393 5.3462 -5.0260 16 14 12.2140 6.0495 -3.6095 17 1 12.9657 5.0134 -2.8567 18 1 12.8352 6.2400 -4.9448 19 1 12.2510 7.3308 -2.8596 20 6 3.5386 2.1249 0.0000 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.1617 2.3526 -0.0098 25 1 0.7212 4.7488 0.0006 26 1 3.0759 5.4653 0.0002 27 1 5.3710 4.8726 0.5137 28 1 5.8949 3.1715 0.5143 29 1 7.6134 5.5639 -0.9544 30 1 8.1381 3.8630 -0.9536 31 1 8.1990 3.8798 -3.4321 32 1 7.6745 5.5807 -3.4336 33 1 10.4904 5.5155 -5.8059 34 1 4.3300 1.3900 0.0003 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596382507.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:00 Heat of formation + Delta-G solvation = 2.953574 kcal Electronic energy + Delta-G solvation = -14680.459538 eV Core-core repulsion = 12215.837921 eV Total energy + Delta-G solvation = -2464.621618 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.29012 -33.67634 -33.08682 -31.12573 -30.85438 -29.50474 -27.01920 -25.18916 -22.99213 -21.89838 -20.90581 -17.57255 -16.50388 -16.46181 -15.62770 -15.50741 -14.73698 -14.50460 -14.23264 -14.10328 -13.87525 -13.68044 -13.36007 -12.84294 -12.69389 -12.56883 -12.04542 -11.57205 -11.51134 -11.32501 -11.00463 -10.63739 -10.43253 -10.18081 -9.92902 -9.64287 -9.61685 -9.06169 -8.76316 -8.41263 -7.59089 -7.13612 -6.05121 -4.09991 0.96533 1.17502 1.29550 2.17492 2.31325 3.22402 3.30838 3.35590 3.38015 3.66659 4.42277 4.54935 4.69778 4.71529 4.72624 4.89662 5.09187 5.20207 5.29568 5.30170 5.39703 5.55881 5.71170 5.84959 6.00004 6.07861 6.18637 6.25195 6.46277 6.73139 6.75300 7.57206 7.66199 7.91002 8.28124 8.94838 9.53817 11.05651 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.041816 B = 0.002999 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.437026 B = 9334.506710 C = 9622.498334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 S -0.120 6.120 3 C -0.085 4.085 4 C -0.136 4.136 5 C -0.101 4.101 6 C -0.106 4.106 7 C -0.041 4.041 8 C -0.056 4.056 9 S -0.273 6.273 10 C -0.062 4.062 11 C 0.038 3.962 12 C -0.522 4.522 13 H 0.057 0.943 14 C 0.060 3.940 15 N -0.891 5.891 16 Si 0.897 3.103 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.276 1.276 20 C -0.082 4.082 21 H 0.084 0.916 22 H 0.107 0.893 23 H 0.083 0.917 24 H 0.122 0.878 25 H 0.126 0.874 26 H 0.128 0.872 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.026 0.974 32 H 0.026 0.974 33 H 0.263 0.737 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.494 -6.847 12.445 24.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S 0.122 5.878 3 C -0.197 4.197 4 C -0.160 4.160 5 C -0.120 4.120 6 C -0.128 4.128 7 C -0.044 4.044 8 C -0.203 4.203 9 S -0.043 6.043 10 C -0.210 4.210 11 C 0.000 4.000 12 C -0.562 4.562 13 H 0.075 0.925 14 C -0.143 4.143 15 N -0.529 5.529 16 Si 0.725 3.275 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.202 1.202 20 C -0.107 4.107 21 H 0.103 0.897 22 H 0.125 0.875 23 H 0.102 0.898 24 H 0.140 0.860 25 H 0.144 0.856 26 H 0.146 0.854 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.045 0.955 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -19.347 -8.075 11.311 23.822 hybrid contribution 0.817 1.643 1.099 2.139 sum -18.530 -6.432 12.410 23.211 Atomic orbital electron populations 1.23658 0.95054 1.06991 1.05598 1.85569 1.06075 1.03356 1.92796 1.21632 0.96516 0.96314 1.05248 1.21112 0.97946 0.93278 1.03679 1.20997 0.96434 0.95208 0.99405 1.21109 0.92207 0.99696 0.99810 1.19236 0.93778 0.92865 0.98558 1.22264 0.94917 1.04409 0.98744 1.87217 1.17897 1.90411 1.08751 1.23722 0.89715 1.01853 1.05682 1.18892 0.94718 0.98186 0.88247 1.21060 0.95843 1.46563 0.92740 0.92508 1.25013 0.98670 0.95394 0.95180 1.69960 1.36709 1.48631 0.97623 0.86579 0.84471 0.79210 0.77276 1.20142 1.21160 1.20157 1.20629 0.94368 0.95490 1.00222 0.89723 0.87478 0.89846 0.86028 0.85593 0.85396 0.89386 0.89483 0.91362 0.91355 0.95529 0.95551 0.92705 0.85217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.15 101.05 0.92 -0.01 16 2 S -0.12 -1.24 22.56 -107.50 -2.43 -3.67 16 3 C -0.08 -1.01 6.11 -39.04 -0.24 -1.25 16 4 C -0.14 -1.42 9.36 -39.36 -0.37 -1.79 16 5 C -0.10 -1.05 10.04 -39.61 -0.40 -1.45 16 6 C -0.11 -1.27 9.70 -39.53 -0.38 -1.65 16 7 C -0.04 -0.55 5.14 -104.65 -0.54 -1.09 16 8 C -0.06 -0.79 6.07 36.01 0.22 -0.57 16 9 S -0.27 -5.14 21.72 -107.50 -2.33 -7.47 16 10 C -0.06 -1.30 5.88 37.16 0.22 -1.09 16 11 C 0.04 1.00 4.98 -27.88 -0.14 0.87 16 12 C -0.52 -14.71 9.11 -34.44 -0.31 -15.03 16 13 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 16 Si 0.90 21.51 29.54 -169.99 -5.02 16.48 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 C -0.08 -1.08 9.45 -39.37 -0.37 -1.45 16 21 H 0.08 0.51 7.74 -51.92 -0.40 0.11 16 22 H 0.11 0.52 8.14 -51.92 -0.42 0.10 16 23 H 0.08 0.46 7.76 -51.92 -0.40 0.06 16 24 H 0.12 0.98 5.88 -52.49 -0.31 0.67 16 25 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 26 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 27 H 0.09 1.13 8.08 -51.92 -0.42 0.71 16 28 H 0.09 1.15 8.08 -51.93 -0.42 0.73 16 29 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.07 1.38 8.14 -51.92 -0.42 0.96 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 317.35 15.07 4.78 4.78 Total: -1.00 -30.87 317.35 -10.63 -41.49 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -4.88 Total: -2.59 kcal Atomic # 6 Polarization: -21.42 SS G_CDS: -1.49 Total: -22.90 kcal Atomic # 7 Polarization: -26.86 SS G_CDS: 0.74 Total: -26.12 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -6.38 SS G_CDS: -4.76 Total: -11.14 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.87 -10.63 -41.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596382507.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.448 kcal (2) G-P(sol) polarization free energy of solvation -30.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds