Wall clock time and date at job start Mon Mar 30 2020 07:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38647 * 120.82425 * 2 1 4 4 Cl 1.73599 * 120.39910 * 359.74229 * 3 2 1 5 5 C 1.38360 * 119.21037 * 180.02562 * 3 2 1 6 6 N 1.31881 * 120.89816 * 0.02562 * 5 3 2 7 7 C 1.31786 * 121.81063 * 359.95498 * 6 5 3 8 8 C 1.38895 * 120.68801 * 0.04656 * 7 6 5 9 9 N 1.39957 * 120.47775 * 180.02562 * 8 7 6 10 10 C 1.34775 * 120.00075 * 24.75587 * 9 8 7 11 11 O 1.21279 * 120.00095 * 5.54599 * 10 9 8 12 12 C 1.50705 * 119.99826 * 185.54069 * 10 9 8 13 13 H 1.08998 * 109.47340 * 300.00876 * 12 10 9 14 14 C 1.53002 * 109.46928 * 60.00477 * 12 10 9 15 15 C 1.50696 * 109.47069 * 180.02562 * 12 10 9 16 16 H 1.08001 * 119.99986 * 0.02562 * 15 12 10 17 17 C 1.37875 * 120.00093 * 180.02562 * 15 12 10 18 18 N 1.31518 * 119.99991 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 120.00238 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.46849 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47468 * 119.99862 * 19 17 15 22 22 H 1.48505 * 109.46891 * 239.99827 * 19 17 15 23 23 H 1.08999 * 109.47059 * 89.99728 * 1 2 3 24 24 H 1.08993 * 109.47368 * 209.99919 * 1 2 3 25 25 H 1.08994 * 109.46630 * 330.00287 * 1 2 3 26 26 H 1.07994 * 119.55201 * 179.97438 * 5 3 2 27 27 H 1.07997 * 119.65265 * 180.02562 * 7 6 5 28 28 H 0.97005 * 119.99508 * 204.76416 * 9 8 7 29 29 H 1.09002 * 109.47444 * 59.99770 * 14 12 10 30 30 H 1.08997 * 109.47180 * 179.97438 * 14 12 10 31 31 H 1.09001 * 109.47345 * 299.99909 * 14 12 10 32 32 H 0.96995 * 120.00183 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2175 1.1906 0.0000 4 17 1.3818 2.7122 -0.0067 5 6 3.6006 1.1517 -0.0005 6 7 4.2456 0.0014 -0.0016 7 6 3.6086 -1.1523 -0.0012 8 6 2.2204 -1.1955 -0.0007 9 7 1.5484 -2.4232 0.0002 10 6 2.1547 -3.5230 0.4893 11 8 3.2414 -3.4310 1.0199 12 6 1.4823 -4.8670 0.3771 13 1 0.5257 -4.8394 0.8989 14 6 1.2489 -5.1989 -1.0982 15 6 2.3619 -5.9221 0.9968 16 1 3.3126 -5.6468 1.4290 17 6 1.9531 -7.2387 1.0119 18 7 0.7951 -7.5738 0.4859 19 14 3.0431 -8.5465 1.7806 20 1 4.2833 -7.9151 2.2987 21 1 2.3170 -9.2022 2.8978 22 1 3.3958 -9.5618 0.7559 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3632 0.8900 0.5138 26 1 4.1594 2.0757 -0.0010 27 1 4.1720 -2.0737 -0.0017 28 1 0.6462 -2.4825 -0.3514 29 1 2.2055 -5.2264 -1.6201 30 1 0.7630 -6.1712 -1.1794 31 1 0.6125 -4.4357 -1.5461 32 1 0.5077 -8.5001 0.4962 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597705095.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:38 Heat of formation + Delta-G solvation = -15.832853 kcal Electronic energy + Delta-G solvation = -17886.852403 eV Core-core repulsion = 14873.079224 eV Total energy + Delta-G solvation = -3013.773179 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.80016 -38.85828 -36.73616 -35.17330 -33.97582 -33.00599 -30.93833 -29.52715 -27.80111 -25.29096 -24.10772 -22.61216 -21.88424 -19.81801 -17.80597 -16.86920 -16.41590 -16.09316 -15.82662 -14.95999 -14.59817 -14.50868 -14.07428 -13.30983 -13.11346 -12.99163 -12.89116 -12.71282 -12.09319 -11.92680 -11.74552 -11.31887 -11.13639 -10.89847 -10.78459 -10.72642 -10.36663 -10.08750 -9.58164 -9.17429 -9.12727 -8.89314 -8.48933 -8.03922 -6.15478 -4.19817 0.97900 1.10876 1.90596 3.23818 3.27060 3.34144 3.37006 3.46353 3.81373 4.37803 4.53226 4.57941 4.69690 5.02132 5.11053 5.18817 5.39546 5.47342 5.66973 5.90040 5.92224 6.07373 6.30904 6.45661 6.63960 6.72504 6.90707 7.27037 7.55375 7.72510 7.91005 7.95958 8.15401 8.76193 8.89931 9.46783 10.92108 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.040850 B = 0.004334 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.262803 B = 6458.774966 C = 6905.065547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.084 4.084 3 C -0.069 4.069 4 Cl -0.061 7.061 5 C 0.077 3.923 6 N -0.451 5.451 7 C 0.092 3.908 8 C 0.132 3.868 9 N -0.676 5.676 10 C 0.519 3.481 11 O -0.515 6.515 12 C 0.033 3.967 13 H 0.058 0.942 14 C -0.135 4.135 15 C -0.506 4.506 16 H 0.077 0.923 17 C 0.061 3.939 18 N -0.895 5.895 19 Si 0.901 3.099 20 H -0.270 1.270 21 H -0.284 1.284 22 H -0.283 1.283 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.160 0.840 27 H 0.186 0.814 28 H 0.411 0.589 29 H 0.034 0.966 30 H 0.097 0.903 31 H 0.013 0.987 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.821 15.526 -3.462 16.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.095 4.095 3 C -0.098 4.098 4 Cl -0.033 7.033 5 C -0.081 4.081 6 N -0.160 5.160 7 C -0.068 4.068 8 C 0.032 3.968 9 N -0.321 5.321 10 C 0.311 3.689 11 O -0.389 6.389 12 C 0.012 3.988 13 H 0.075 0.925 14 C -0.193 4.193 15 C -0.544 4.544 16 H 0.095 0.905 17 C -0.141 4.141 18 N -0.534 5.534 19 Si 0.729 3.271 20 H -0.195 1.195 21 H -0.210 1.210 22 H -0.209 1.209 23 H 0.099 0.901 24 H 0.094 0.906 25 H 0.098 0.902 26 H 0.178 0.822 27 H 0.202 0.798 28 H 0.248 0.752 29 H 0.053 0.947 30 H 0.116 0.884 31 H 0.032 0.968 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.320 15.429 -3.095 15.792 hybrid contribution -1.025 -0.535 0.208 1.175 sum -2.345 14.894 -2.887 15.352 Atomic orbital electron populations 1.20795 0.89318 1.04115 1.03275 1.19893 0.97336 0.90274 1.02001 1.21722 0.93557 0.86859 1.07701 1.98348 1.78459 1.29536 1.96916 1.22655 0.89235 0.97273 0.98972 1.67917 1.39263 0.97672 1.11174 1.23508 0.90519 0.97255 0.95546 1.18867 0.93011 0.86044 0.98899 1.44216 1.19381 1.06103 1.62386 1.22508 0.85980 0.86108 0.74287 1.90518 1.21478 1.85735 1.41131 1.18940 0.97525 0.86141 0.96206 0.92458 1.21786 0.99522 1.03006 0.94980 1.21138 1.05099 0.90827 1.37375 0.90497 1.24941 0.95269 0.98608 0.95246 1.69863 1.20044 1.18252 1.45198 0.86365 0.80747 0.81085 0.78907 1.19452 1.20966 1.20944 0.90127 0.90622 0.90182 0.82242 0.79780 0.75227 0.94658 0.88414 0.96796 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 9.16 36.01 0.33 -0.88 16 2 C -0.08 -1.11 5.94 -104.11 -0.62 -1.73 16 3 C -0.07 -0.88 6.34 -39.39 -0.25 -1.13 16 4 Cl -0.06 -0.64 27.47 -51.86 -1.42 -2.06 16 5 C 0.08 1.03 10.98 -17.49 -0.19 0.84 16 6 N -0.45 -7.33 10.35 -13.06 -0.14 -7.47 16 7 C 0.09 1.60 9.90 -17.33 -0.17 1.43 16 8 C 0.13 2.09 6.44 -83.54 -0.54 1.56 16 9 N -0.68 -10.99 4.87 -9.77 -0.05 -11.04 16 10 C 0.52 10.82 6.96 -10.98 -0.08 10.74 16 11 O -0.52 -12.20 12.65 5.56 0.07 -12.13 16 12 C 0.03 0.76 2.63 -92.92 -0.24 0.51 16 13 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 14 C -0.13 -2.86 8.87 37.16 0.33 -2.53 16 15 C -0.51 -13.52 8.38 -34.44 -0.29 -13.81 16 16 H 0.08 2.17 6.75 -52.49 -0.35 1.82 16 17 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 18 N -0.89 -23.93 11.32 55.43 0.63 -23.30 16 19 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.07 0.76 7.10 -51.93 -0.37 0.39 16 25 H 0.08 0.75 7.03 -51.93 -0.37 0.39 16 26 H 0.16 1.69 8.06 -52.49 -0.42 1.27 16 27 H 0.19 3.57 5.80 -52.49 -0.30 3.27 16 28 H 0.41 5.51 7.13 -40.82 -0.29 5.22 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.10 2.31 6.07 -51.93 -0.32 2.00 16 31 H 0.01 0.23 7.70 -51.93 -0.40 -0.17 16 32 H 0.26 6.70 8.31 -40.82 -0.34 6.37 16 LS Contribution 286.79 15.07 4.32 4.32 Total: -1.00 -28.71 286.79 -6.65 -35.36 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -3.22 Total: 3.83 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -1.81 Total: -3.49 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: 0.44 Total: -41.81 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.07 Total: -12.13 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.42 Total: -2.06 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.71 -6.65 -35.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597705095.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.524 kcal (2) G-P(sol) polarization free energy of solvation -28.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds