Wall clock time and date at job start Mon Mar 30 2020 07:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38647 * 120.82425 * 2 1 4 4 Cl 1.73599 * 120.39910 * 359.74229 * 3 2 1 5 5 C 1.38360 * 119.21037 * 180.02562 * 3 2 1 6 6 N 1.31881 * 120.89816 * 0.02562 * 5 3 2 7 7 C 1.31786 * 121.81063 * 359.95498 * 6 5 3 8 8 C 1.38895 * 120.68801 * 0.04656 * 7 6 5 9 9 N 1.39957 * 120.47775 * 180.02562 * 8 7 6 10 10 C 1.34775 * 120.00075 * 24.75587 * 9 8 7 11 11 O 1.21279 * 120.00095 * 5.54599 * 10 9 8 12 12 C 1.50705 * 119.99826 * 185.54069 * 10 9 8 13 13 H 1.08998 * 109.47340 * 300.00876 * 12 10 9 14 14 C 1.53002 * 109.46928 * 60.00477 * 12 10 9 15 15 C 1.50696 * 109.47069 * 180.02562 * 12 10 9 16 16 H 1.08001 * 119.99986 * 0.02562 * 15 12 10 17 17 C 1.37875 * 120.00093 * 180.02562 * 15 12 10 18 18 N 1.31518 * 119.99991 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 120.00238 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.46849 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47468 * 119.99862 * 19 17 15 22 22 H 1.48505 * 109.46891 * 239.99827 * 19 17 15 23 23 H 1.08999 * 109.47059 * 89.99728 * 1 2 3 24 24 H 1.08993 * 109.47368 * 209.99919 * 1 2 3 25 25 H 1.08994 * 109.46630 * 330.00287 * 1 2 3 26 26 H 1.07994 * 119.55201 * 179.97438 * 5 3 2 27 27 H 1.07997 * 119.65265 * 180.02562 * 7 6 5 28 28 H 0.97005 * 119.99508 * 204.76416 * 9 8 7 29 29 H 1.09002 * 109.47444 * 59.99770 * 14 12 10 30 30 H 1.08997 * 109.47180 * 179.97438 * 14 12 10 31 31 H 1.09001 * 109.47345 * 299.99909 * 14 12 10 32 32 H 0.96995 * 120.00183 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2175 1.1906 0.0000 4 17 1.3818 2.7122 -0.0067 5 6 3.6006 1.1517 -0.0005 6 7 4.2456 0.0014 -0.0016 7 6 3.6086 -1.1523 -0.0012 8 6 2.2204 -1.1955 -0.0007 9 7 1.5484 -2.4232 0.0002 10 6 2.1547 -3.5230 0.4893 11 8 3.2414 -3.4310 1.0199 12 6 1.4823 -4.8670 0.3771 13 1 0.5257 -4.8394 0.8989 14 6 1.2489 -5.1989 -1.0982 15 6 2.3619 -5.9221 0.9968 16 1 3.3126 -5.6468 1.4290 17 6 1.9531 -7.2387 1.0119 18 7 0.7951 -7.5738 0.4859 19 14 3.0431 -8.5465 1.7806 20 1 4.2833 -7.9151 2.2987 21 1 2.3170 -9.2022 2.8978 22 1 3.3958 -9.5618 0.7559 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3632 0.8900 0.5138 26 1 4.1594 2.0757 -0.0010 27 1 4.1720 -2.0737 -0.0017 28 1 0.6462 -2.4825 -0.3514 29 1 2.2055 -5.2264 -1.6201 30 1 0.7630 -6.1712 -1.1794 31 1 0.6125 -4.4357 -1.5461 32 1 0.5077 -8.5001 0.4962 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597705095.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:37 Heat of formation + Delta-G solvation = -33.564119 kcal Electronic energy + Delta-G solvation = -17887.621289 eV Core-core repulsion = 14873.079224 eV Total energy + Delta-G solvation = -3014.542064 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.08300 -40.31296 -37.70283 -36.52003 -35.87335 -34.18540 -32.70997 -30.83138 -28.82341 -27.23309 -25.54234 -23.99930 -23.13093 -21.36611 -19.16166 -18.39870 -17.97832 -17.44457 -17.29775 -16.51620 -16.07216 -15.74584 -15.54930 -14.89551 -14.55874 -14.20205 -13.93021 -13.87535 -13.59197 -13.06282 -12.98757 -12.89509 -12.71625 -12.61292 -12.30129 -12.21973 -12.05121 -11.95711 -11.06801 -10.73730 -10.66271 -10.42119 -10.18241 -9.31915 -8.17352 -6.27377 -0.18139 -0.02936 0.89788 1.39923 1.43342 1.55386 1.69176 2.03526 2.45274 2.59941 3.13477 3.48850 3.53754 3.56704 3.86261 3.96064 4.31777 4.54615 4.64273 4.67118 4.72507 4.89733 4.95988 4.99139 5.04199 5.14175 5.45995 5.60476 5.72855 5.89164 6.15365 6.45930 6.77219 6.81188 7.20193 7.42058 8.88545 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.040850 B = 0.004334 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.262803 B = 6458.774966 C = 6905.065547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.068 4.068 3 C -0.070 4.070 4 Cl -0.031 7.031 5 C 0.083 3.917 6 N -0.474 5.474 7 C 0.070 3.930 8 C 0.111 3.889 9 N -0.656 5.656 10 C 0.525 3.475 11 O -0.552 6.552 12 C 0.030 3.970 13 H 0.052 0.948 14 C -0.123 4.123 15 C -0.530 4.530 16 H 0.051 0.949 17 C 0.024 3.976 18 N -0.908 5.908 19 Si 0.953 3.047 20 H -0.280 1.280 21 H -0.275 1.275 22 H -0.275 1.275 23 H 0.104 0.896 24 H 0.079 0.921 25 H 0.092 0.908 26 H 0.190 0.810 27 H 0.156 0.844 28 H 0.426 0.574 29 H 0.024 0.976 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.197 17.426 -3.944 18.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.079 4.079 3 C -0.099 4.099 4 Cl -0.002 7.002 5 C -0.076 4.076 6 N -0.183 5.183 7 C -0.089 4.089 8 C 0.012 3.988 9 N -0.302 5.302 10 C 0.316 3.684 11 O -0.429 6.429 12 C 0.008 3.992 13 H 0.070 0.930 14 C -0.181 4.181 15 C -0.568 4.568 16 H 0.070 0.930 17 C -0.176 4.176 18 N -0.547 5.547 19 Si 0.779 3.221 20 H -0.205 1.205 21 H -0.201 1.201 22 H -0.201 1.201 23 H 0.122 0.878 24 H 0.097 0.903 25 H 0.111 0.889 26 H 0.207 0.793 27 H 0.173 0.827 28 H 0.266 0.734 29 H 0.044 0.956 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.736 17.350 -3.603 17.930 hybrid contribution -0.629 -0.916 0.346 1.164 sum -3.365 16.434 -3.256 17.088 Atomic orbital electron populations 1.20953 0.86791 1.04958 1.04991 1.20199 0.98999 0.89266 0.99481 1.21785 0.93563 0.87985 1.06583 1.98365 1.77777 1.27408 1.96678 1.23173 0.90081 0.97265 0.97041 1.67867 1.40053 0.98122 1.12250 1.23133 0.91330 0.96939 0.97476 1.18814 0.92584 0.86443 1.00912 1.43693 1.19660 1.05357 1.61537 1.21978 0.85386 0.86636 0.74415 1.90515 1.22975 1.86340 1.43046 1.18841 0.96584 0.86794 0.96933 0.92990 1.21607 0.99529 1.03064 0.93915 1.21287 1.04914 0.92462 1.38183 0.93050 1.25520 0.96401 1.00013 0.95641 1.69930 1.20652 1.18719 1.45415 0.85583 0.78981 0.79061 0.78504 1.20495 1.20099 1.20070 0.87795 0.90261 0.88892 0.79326 0.82734 0.73426 0.95630 0.90721 0.92648 0.92525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.03 9.16 71.24 0.65 -1.38 16 2 C -0.07 -1.65 5.94 -19.53 -0.12 -1.76 16 3 C -0.07 -1.58 6.34 22.40 0.14 -1.44 16 4 Cl -0.03 -0.54 27.47 -2.72 -0.07 -0.61 16 5 C 0.08 2.07 10.98 84.71 0.93 3.00 16 6 N -0.47 -15.29 10.35 -195.23 -2.02 -17.31 16 7 C 0.07 2.50 9.90 84.86 0.84 3.34 16 8 C 0.11 3.46 6.44 38.24 0.25 3.71 16 9 N -0.66 -20.92 4.87 -303.21 -1.48 -22.40 16 10 C 0.52 22.29 6.96 87.66 0.61 22.90 16 11 O -0.55 -27.38 12.65 -3.03 -0.04 -27.42 16 12 C 0.03 1.38 2.63 -12.29 -0.03 1.35 16 13 H 0.05 2.46 8.14 -2.39 -0.02 2.45 16 14 C -0.12 -5.19 8.87 71.98 0.64 -4.55 16 15 C -0.53 -29.17 8.38 25.60 0.21 -28.95 16 16 H 0.05 3.04 6.75 -2.91 -0.02 3.02 16 17 C 0.02 1.28 5.30 84.65 0.45 1.73 16 18 N -0.91 -48.72 11.32 21.45 0.24 -48.48 16 19 Si 0.95 43.59 29.54 68.60 2.03 45.61 16 20 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 21 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 22 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 23 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.08 1.32 7.10 -2.39 -0.02 1.31 16 25 H 0.09 1.37 7.03 -2.39 -0.02 1.35 16 26 H 0.19 3.43 8.06 -2.91 -0.02 3.41 16 27 H 0.16 6.42 5.80 -2.91 -0.02 6.41 16 28 H 0.43 10.59 7.13 -92.70 -0.66 9.93 16 29 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.07 3.52 6.07 -2.39 -0.01 3.51 16 31 H 0.05 1.82 7.70 -2.39 -0.02 1.80 16 32 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16 Total: -1.00 -63.43 286.79 3.74 -59.70 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.50 Total: 12.96 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: 4.57 Total: -2.06 kcal Atomic # 7 Polarization: -84.93 SS G_CDS: -3.26 Total: -88.19 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -0.04 Total: -27.42 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -0.07 Total: -0.61 kcal Total: -63.43 3.74 -59.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597705095.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.133 kcal (2) G-P(sol) polarization free energy of solvation -63.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds