Wall clock time and date at job start Mon Mar 30 2020 07:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46506 * 109.47137 * 2 1 4 4 C 1.36883 * 119.99500 * 278.72877 * 3 2 1 5 5 H 1.08002 * 120.00116 * 237.45552 * 4 3 2 6 6 C 1.39047 * 119.99907 * 57.46204 * 4 3 2 7 7 N 1.31367 * 119.99806 * 44.41499 * 6 4 3 8 8 Si 1.86799 * 119.99704 * 224.41324 * 6 4 3 9 9 H 1.48503 * 109.46961 * 90.00352 * 8 6 4 10 10 H 1.48500 * 109.46734 * 209.99803 * 8 6 4 11 11 H 1.48492 * 109.47425 * 330.00086 * 8 6 4 12 12 C 1.34777 * 120.00179 * 98.73119 * 3 2 1 13 13 O 1.21595 * 119.99598 * 184.55473 * 12 3 2 14 14 C 1.47645 * 119.99831 * 4.55273 * 12 3 2 15 15 C 1.40076 * 120.57565 * 312.84848 * 14 12 3 16 16 C 1.38335 * 118.29761 * 179.71555 * 15 14 12 17 17 C 1.38366 * 119.34802 * 0.50735 * 16 15 14 18 18 C 1.50696 * 119.43856 * 179.75593 * 17 16 15 19 19 N 1.31926 * 121.11536 * 359.48224 * 17 16 15 20 20 C 1.31810 * 121.87130 * 0.27141 * 19 17 16 21 21 Cl 1.73603 * 119.74295 * 180.02562 * 20 19 17 22 22 H 1.08994 * 109.47724 * 320.18744 * 1 2 3 23 23 H 1.09004 * 109.46634 * 80.18194 * 1 2 3 24 24 H 1.09000 * 109.47035 * 200.17993 * 1 2 3 25 25 H 1.08998 * 109.47937 * 239.99395 * 2 1 3 26 26 H 1.09006 * 109.46613 * 119.99251 * 2 1 3 27 27 H 0.97003 * 119.99435 * 180.02562 * 7 6 4 28 28 H 1.08004 * 120.85581 * 0.02562 * 15 14 12 29 29 H 1.08001 * 120.32672 * 180.28863 * 16 15 14 30 30 H 1.09003 * 109.47009 * 269.72497 * 18 17 16 31 31 H 1.08993 * 109.47771 * 29.73004 * 18 17 16 32 32 H 1.09001 * 109.47025 * 149.73273 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.0768 2.0864 -1.1718 5 1 3.0159 2.5030 -1.5051 6 6 0.9272 2.2665 -1.9329 7 7 -0.2012 2.6012 -1.3493 8 14 0.9873 2.0326 -3.7852 9 1 0.6846 0.6168 -4.1154 10 1 -0.0177 2.9166 -4.4285 11 1 2.3424 2.3785 -4.2841 12 6 2.4100 1.9576 1.1537 13 8 2.7367 3.1288 1.1679 14 6 2.4424 1.1668 2.4001 15 6 1.3566 0.3580 2.7592 16 6 1.4396 -0.3674 3.9341 17 6 2.5766 -0.2645 4.7158 18 6 2.6669 -1.0496 5.9989 19 7 3.5852 0.5052 4.3541 20 6 3.5572 1.2122 3.2420 21 17 4.9160 2.2065 2.8191 22 1 -0.3634 0.7893 0.6579 23 1 -0.3633 0.1752 -1.0127 24 1 -0.3633 -0.9646 0.3545 25 1 1.8934 -0.5139 -0.8899 26 1 1.8932 -0.5138 0.8901 27 1 -1.0032 2.7265 -1.8803 28 1 0.4791 0.2983 2.1323 29 1 0.6234 -1.0051 4.2401 30 1 2.2711 -0.4513 6.8196 31 1 2.0861 -1.9671 5.9052 32 1 3.7089 -1.2981 6.2002 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688553664.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:57 Heat of formation + Delta-G solvation = -11.254794 kcal Electronic energy + Delta-G solvation = -18518.702532 eV Core-core repulsion = 15505.127873 eV Total energy + Delta-G solvation = -3013.574660 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.01 seconds Orbital eigenvalues (eV) -41.71234 -39.87365 -37.71720 -36.88923 -34.65912 -33.50904 -33.24369 -31.29474 -29.14113 -26.89331 -24.69759 -24.04945 -23.60713 -21.34037 -18.99321 -18.24880 -17.76454 -17.52013 -16.89018 -16.32420 -15.74634 -15.44367 -15.37429 -15.08175 -14.48659 -13.85747 -13.75536 -13.66997 -13.41185 -13.27192 -13.12072 -13.03496 -12.70613 -12.47324 -12.28471 -12.23149 -12.15394 -11.87277 -10.99331 -10.82463 -10.64944 -10.19864 -9.83936 -9.29629 -8.41190 -6.11174 -0.35206 0.01343 0.77043 1.37061 1.44840 1.55465 2.04531 2.30983 2.55258 2.75407 2.94045 3.37175 3.67542 3.80715 3.88751 4.21144 4.21314 4.34304 4.57663 4.65359 4.73043 4.85318 4.94309 4.99677 5.01510 5.15121 5.16242 5.52075 5.52984 5.62762 6.32884 6.58726 6.65585 7.21835 7.37020 8.11338 8.55260 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.026716 B = 0.006730 C = 0.005718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.828960 B = 4159.515731 C = 4895.365776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.097 3.903 3 N -0.441 5.441 4 C -0.398 4.398 5 H 0.050 0.950 6 C 0.055 3.945 7 N -0.831 5.831 8 Si 0.951 3.049 9 H -0.254 1.254 10 H -0.281 1.281 11 H -0.273 1.273 12 C 0.497 3.503 13 O -0.598 6.598 14 C -0.173 4.173 15 C -0.047 4.047 16 C -0.155 4.155 17 C 0.145 3.855 18 C -0.099 4.099 19 N -0.500 5.500 20 C 0.192 3.808 21 Cl -0.034 7.034 22 H 0.043 0.957 23 H 0.042 0.958 24 H 0.088 0.912 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.275 0.725 28 H 0.162 0.838 29 H 0.196 0.804 30 H 0.096 0.904 31 H 0.114 0.886 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.453 -13.216 10.140 16.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.026 4.026 3 N -0.161 5.161 4 C -0.523 4.523 5 H 0.068 0.932 6 C -0.158 4.158 7 N -0.461 5.461 8 Si 0.773 3.227 9 H -0.179 1.179 10 H -0.207 1.207 11 H -0.198 1.198 12 C 0.285 3.715 13 O -0.482 6.482 14 C -0.180 4.180 15 C -0.072 4.072 16 C -0.174 4.174 17 C 0.007 3.993 18 C -0.155 4.155 19 N -0.213 5.213 20 C 0.028 3.972 21 Cl -0.005 7.005 22 H 0.062 0.938 23 H 0.061 0.939 24 H 0.106 0.894 25 H 0.088 0.912 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.180 0.820 29 H 0.213 0.787 30 H 0.115 0.885 31 H 0.133 0.867 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.651 -12.456 10.591 16.363 hybrid contribution -0.337 0.853 -1.719 1.948 sum -0.988 -11.604 8.872 14.640 Atomic orbital electron populations 1.22106 0.95098 1.01205 1.01966 1.21932 0.95429 0.83220 1.02006 1.43530 1.56915 1.11079 1.04533 1.18699 0.94240 1.41409 0.97975 0.93231 1.26098 0.94453 0.91565 1.03677 1.70448 1.02666 1.33025 1.40009 0.85668 0.78221 0.79410 0.79375 1.17864 1.20702 1.19801 1.18964 0.82235 0.86435 0.83827 1.90603 1.53529 1.18108 1.85938 1.21014 0.96656 1.02185 0.98115 1.22430 0.96857 0.90952 0.96990 1.22469 1.00401 1.01073 0.93423 1.22221 0.87767 0.91693 0.97617 1.20924 1.04848 0.99493 0.90276 1.66918 1.31414 1.08349 1.14644 1.21683 0.89125 0.94403 0.91980 1.98396 1.43611 1.66764 1.91759 0.93788 0.93934 0.89353 0.91174 0.90217 0.91514 0.82034 0.78650 0.88540 0.86721 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.21 7.39 71.98 0.53 -4.67 16 2 C 0.10 3.80 5.49 86.38 0.47 4.28 16 3 N -0.44 -22.57 2.54 -639.01 -1.63 -24.20 16 4 C -0.40 -22.62 8.37 84.10 0.70 -21.92 16 5 H 0.05 3.09 8.06 -2.91 -0.02 3.07 16 6 C 0.05 2.86 4.06 84.96 0.35 3.20 16 7 N -0.83 -44.50 12.20 21.68 0.26 -44.23 16 8 Si 0.95 40.32 29.69 68.60 2.04 42.36 16 9 H -0.25 -9.92 7.11 99.48 0.71 -9.22 16 10 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 12 C 0.50 26.17 6.78 86.73 0.59 26.76 16 13 O -0.60 -36.93 15.72 -4.02 -0.06 -37.00 16 14 C -0.17 -7.24 5.01 -19.98 -0.10 -7.34 16 15 C -0.05 -1.47 7.58 22.74 0.17 -1.30 16 16 C -0.15 -3.42 9.72 22.32 0.22 -3.20 16 17 C 0.15 3.54 6.78 42.57 0.29 3.83 16 18 C -0.10 -1.34 10.16 71.23 0.72 -0.62 16 19 N -0.50 -16.81 10.24 -173.71 -1.78 -18.58 16 20 C 0.19 7.73 7.30 85.07 0.62 8.35 16 21 Cl -0.03 -1.43 27.27 -2.72 -0.07 -1.51 16 22 H 0.04 1.76 6.83 -2.39 -0.02 1.74 16 23 H 0.04 1.68 6.78 -2.38 -0.02 1.67 16 24 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 25 H 0.07 2.66 8.11 -2.39 -0.02 2.64 16 26 H 0.08 2.69 5.17 -2.38 -0.01 2.68 16 27 H 0.27 13.51 8.31 -92.71 -0.77 12.74 16 28 H 0.16 4.92 4.30 -2.91 -0.01 4.90 16 29 H 0.20 2.23 8.06 -2.91 -0.02 2.21 16 30 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.11 0.78 8.07 -2.39 -0.02 0.77 16 32 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -74.76 285.72 4.47 -70.28 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: 1.15 Total: 5.51 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: 4.57 Total: 7.37 kcal Atomic # 7 Polarization: -83.87 SS G_CDS: -3.14 Total: -87.01 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -0.06 Total: -37.00 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.04 Total: 42.36 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -0.07 Total: -1.51 kcal Total: -74.76 4.47 -70.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688553664.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.026 kcal (2) G-P(sol) polarization free energy of solvation -74.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.01 seconds