Wall clock time and date at job start Mon Mar 30 2020 07:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38353 * 119.44707 * 2 1 4 4 C 1.38351 * 119.33965 * 179.76986 * 3 2 1 5 5 C 1.40015 * 118.30100 * 0.50303 * 4 3 2 6 6 C 1.47758 * 120.56585 * 179.72824 * 5 4 3 7 7 O 1.21560 * 120.00179 * 180.02562 * 6 5 4 8 8 N 1.34783 * 119.99830 * 0.02562 * 6 5 4 9 9 C 1.46507 * 119.99641 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.47132 * 325.00240 * 9 8 6 11 11 C 1.52998 * 109.46965 * 85.00532 * 9 8 6 12 12 C 1.50702 * 109.46846 * 205.00318 * 9 8 6 13 13 H 1.07995 * 120.00092 * 359.97438 * 12 9 8 14 14 C 1.37877 * 119.99946 * 180.02562 * 12 9 8 15 15 N 1.31518 * 119.99995 * 359.97438 * 14 12 9 16 16 Si 1.86793 * 120.00142 * 179.97438 * 14 12 9 17 17 H 1.48504 * 109.47345 * 89.99666 * 16 14 12 18 18 H 1.48502 * 109.47247 * 209.99685 * 16 14 12 19 19 H 1.48503 * 109.47379 * 329.99813 * 16 14 12 20 20 C 1.39709 * 118.86507 * 359.74271 * 5 4 3 21 21 Cl 1.73598 * 119.73490 * 179.97438 * 20 5 4 22 22 N 1.31821 * 120.52468 * 0.02562 * 20 5 4 23 23 H 1.09001 * 109.46953 * 269.71985 * 1 2 3 24 24 H 1.09000 * 109.47318 * 29.71582 * 1 2 3 25 25 H 1.09000 * 109.47161 * 149.72213 * 1 2 3 26 26 H 1.08003 * 120.32719 * 0.03295 * 3 2 1 27 27 H 1.07998 * 120.84411 * 180.23920 * 4 3 2 28 28 H 0.96994 * 120.00052 * 0.02562 * 8 6 5 29 29 H 1.09000 * 109.46952 * 299.99921 * 11 9 8 30 30 H 1.09005 * 109.47187 * 59.99429 * 11 9 8 31 31 H 1.09000 * 109.46989 * 179.97438 * 11 9 8 32 32 H 0.96991 * 120.00251 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1872 1.2048 0.0000 4 6 3.5707 1.2022 0.0048 5 6 4.2323 -0.0318 -0.0012 6 6 5.7086 -0.0929 -0.0025 7 8 6.2723 -1.1699 -0.0083 8 7 6.4302 1.0455 0.0027 9 6 7.8940 0.9848 0.0009 10 1 8.2228 0.1256 0.5855 11 6 8.3968 0.8458 -1.4373 12 6 8.4498 2.2475 0.6075 13 1 7.7797 3.0181 0.9588 14 6 9.8137 2.4192 0.7131 15 7 10.6297 1.4809 0.2848 16 14 10.5027 3.9845 1.4643 17 1 10.6625 3.8018 2.9294 18 1 11.8235 4.2858 0.8561 19 1 9.5698 5.1104 1.2048 20 6 3.4726 -1.2043 -0.0064 21 17 4.2695 -2.7465 -0.0146 22 7 2.1556 -1.1487 -0.0060 23 1 -0.3633 -0.0050 1.0277 24 1 -0.3634 0.8925 -0.5094 25 1 -0.3633 -0.8875 -0.5181 26 1 1.6435 2.1380 0.0005 27 1 4.1262 2.1284 0.0088 28 1 5.9804 1.9048 0.0077 29 1 7.9948 -0.0674 -1.8761 30 1 8.0680 1.7050 -2.0219 31 1 9.4859 0.8011 -1.4387 32 1 11.5892 1.6015 0.3594 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688597078.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:41 Heat of formation + Delta-G solvation = -8.535994 kcal Electronic energy + Delta-G solvation = -17731.583216 eV Core-core repulsion = 14718.126452 eV Total energy + Delta-G solvation = -3013.456764 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.56586 -38.54557 -36.40528 -34.84231 -33.39510 -32.43062 -32.12205 -29.16607 -27.78668 -25.28792 -23.75682 -23.09404 -21.31109 -19.59160 -18.09221 -16.99032 -16.32124 -15.82074 -15.16656 -15.05931 -14.66819 -14.15791 -13.99388 -13.64234 -13.11037 -12.87596 -12.56975 -12.39091 -12.32015 -11.73314 -11.36218 -11.20483 -11.01315 -10.97012 -10.71295 -10.31027 -10.26176 -9.98128 -9.95681 -9.09207 -8.89815 -8.87723 -8.57531 -7.96018 -6.15165 -4.24920 0.56020 0.97355 1.97706 3.12919 3.22659 3.29331 3.30678 3.81487 3.93913 4.22614 4.34439 4.49116 4.71719 4.88968 5.04052 5.17307 5.29809 5.31882 5.40283 5.71016 5.77755 5.88334 6.28738 6.80030 6.93942 7.11561 7.38699 7.49320 7.57988 7.65527 7.87663 8.11370 8.56702 8.72760 9.01264 9.42419 10.90807 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.028039 B = 0.004885 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.382914 B = 5730.096408 C = 6483.467046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.155 3.845 3 C -0.179 4.179 4 C -0.031 4.031 5 C -0.166 4.166 6 C 0.541 3.459 7 O -0.524 6.524 8 N -0.700 5.700 9 C 0.265 3.735 10 H 0.052 0.948 11 C -0.147 4.147 12 C -0.535 4.535 13 H 0.061 0.939 14 C 0.067 3.933 15 N -0.882 5.882 16 Si 0.902 3.098 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.222 3.778 21 Cl 0.009 6.991 22 N -0.487 5.487 23 H 0.082 0.918 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.146 0.854 27 H 0.150 0.850 28 H 0.386 0.614 29 H 0.016 0.984 30 H 0.026 0.974 31 H 0.091 0.909 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.635 0.700 -1.165 17.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.016 3.984 3 C -0.199 4.199 4 C -0.058 4.058 5 C -0.173 4.173 6 C 0.325 3.675 7 O -0.402 6.402 8 N -0.348 5.348 9 C 0.164 3.836 10 H 0.070 0.930 11 C -0.206 4.206 12 C -0.574 4.574 13 H 0.079 0.921 14 C -0.136 4.136 15 N -0.519 5.519 16 Si 0.730 3.270 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.199 1.199 20 C 0.057 3.943 21 Cl 0.038 6.962 22 N -0.200 5.200 23 H 0.101 0.899 24 H 0.098 0.902 25 H 0.099 0.901 26 H 0.163 0.837 27 H 0.167 0.833 28 H 0.219 0.781 29 H 0.035 0.965 30 H 0.045 0.955 31 H 0.110 0.890 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.358 -1.030 -1.196 17.430 hybrid contribution 0.750 1.949 0.397 2.126 sum -16.608 0.919 -0.799 16.653 Atomic orbital electron populations 1.20779 0.88037 1.03864 1.03506 1.21362 0.97102 0.87352 0.92539 1.21958 0.94558 0.99528 1.03896 1.21864 0.94491 0.97398 0.92017 1.21018 0.96763 0.93018 1.06473 1.17834 0.85104 0.85712 0.78887 1.90828 1.71592 1.28029 1.49765 1.46480 1.10069 1.06482 1.71818 1.18805 0.72261 0.98385 0.94152 0.93024 1.22080 1.04422 0.96867 0.97206 1.21186 0.91997 1.02799 1.41401 0.92101 1.24879 0.96753 0.96878 0.95115 1.69898 1.03455 1.33027 1.45540 0.86442 0.78437 0.82850 0.79318 1.20537 1.21046 1.19862 1.21822 0.88843 0.88622 0.95008 1.98456 1.76582 1.25627 1.95488 1.66964 1.08042 1.30068 1.14884 0.89911 0.90200 0.90117 0.83664 0.83252 0.78093 0.96483 0.95479 0.89039 0.92511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.77 10.16 36.01 0.37 -0.40 16 2 C 0.15 1.77 6.78 -82.51 -0.56 1.21 16 3 C -0.18 -1.84 9.72 -39.50 -0.38 -2.22 16 4 C -0.03 -0.39 9.65 -38.87 -0.37 -0.77 16 5 C -0.17 -2.76 5.89 -104.79 -0.62 -3.38 16 6 C 0.54 11.05 7.74 -12.37 -0.10 10.96 16 7 O -0.52 -12.41 13.66 5.31 0.07 -12.34 16 8 N -0.70 -14.39 5.02 -55.90 -0.28 -14.67 16 9 C 0.27 6.65 2.56 -69.08 -0.18 6.48 16 10 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 11 C -0.15 -3.62 9.26 37.16 0.34 -3.28 16 12 C -0.54 -13.90 8.73 -34.44 -0.30 -14.20 16 13 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 14 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 15 N -0.88 -24.56 11.32 55.43 0.63 -23.93 16 16 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 20 C 0.22 3.73 7.31 -17.01 -0.12 3.61 16 21 Cl 0.01 0.17 26.20 -51.86 -1.36 -1.19 16 22 N -0.49 -7.22 10.24 -6.28 -0.06 -7.29 16 23 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.08 0.40 8.07 -51.93 -0.42 -0.02 16 25 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16 27 H 0.15 1.54 6.52 -52.49 -0.34 1.19 16 28 H 0.39 6.68 6.65 -40.82 -0.27 6.41 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 32 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 291.95 15.07 4.40 4.40 Total: -1.00 -30.95 291.95 -7.04 -37.99 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -3.40 Total: 2.06 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -2.02 Total: -0.31 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: 0.28 Total: -45.89 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.07 Total: -12.34 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 17 Polarization: 0.17 SS G_CDS: -1.36 Total: -1.19 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.95 -7.04 -37.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688597078.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.457 kcal (2) G-P(sol) polarization free energy of solvation -30.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds