Wall clock time and date at job start Mon Mar 30 2020 07:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38353 * 119.44707 * 2 1 4 4 C 1.38351 * 119.33965 * 179.76986 * 3 2 1 5 5 C 1.40015 * 118.30100 * 0.50303 * 4 3 2 6 6 C 1.47758 * 120.56585 * 179.72824 * 5 4 3 7 7 O 1.21560 * 120.00179 * 180.02562 * 6 5 4 8 8 N 1.34783 * 119.99830 * 0.02562 * 6 5 4 9 9 C 1.46507 * 119.99641 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.46796 * 180.02562 * 9 8 6 11 11 C 1.50700 * 109.47199 * 180.02562 * 10 9 8 12 12 H 1.07995 * 119.99672 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00023 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00081 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99832 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47291 * 89.99607 * 15 13 11 17 17 H 1.48496 * 109.47134 * 209.99608 * 15 13 11 18 18 H 1.48498 * 109.46970 * 329.99678 * 15 13 11 19 19 C 1.39709 * 118.86507 * 359.74271 * 5 4 3 20 20 Cl 1.73598 * 119.73490 * 179.97438 * 19 5 4 21 21 N 1.31821 * 120.52468 * 0.02562 * 19 5 4 22 22 H 1.09001 * 109.46953 * 269.71985 * 1 2 3 23 23 H 1.09000 * 109.47318 * 29.71582 * 1 2 3 24 24 H 1.09000 * 109.47161 * 149.72213 * 1 2 3 25 25 H 1.08003 * 120.32719 * 0.03295 * 3 2 1 26 26 H 1.07998 * 120.84411 * 180.23920 * 4 3 2 27 27 H 0.96994 * 120.00052 * 0.02562 * 8 6 5 28 28 H 1.08998 * 109.47121 * 300.00430 * 9 8 6 29 29 H 1.08997 * 109.47136 * 60.00540 * 9 8 6 30 30 H 1.08998 * 109.47398 * 299.99968 * 10 9 8 31 31 H 1.09002 * 109.47503 * 60.00036 * 10 9 8 32 32 H 0.97004 * 119.99881 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1872 1.2048 0.0000 4 6 3.5707 1.2022 0.0048 5 6 4.2323 -0.0318 -0.0012 6 6 5.7086 -0.0929 -0.0025 7 8 6.2723 -1.1699 -0.0083 8 7 6.4302 1.0455 0.0027 9 6 7.8940 0.9848 0.0009 10 6 8.4632 2.4050 0.0084 11 6 9.9689 2.3427 0.0059 12 1 10.4697 1.3859 0.0000 13 6 10.7070 3.5072 0.0123 14 7 10.0971 4.6723 0.0199 15 14 12.5735 3.4299 0.0099 16 1 13.0667 3.4178 -1.3908 17 1 13.1189 4.6166 0.7165 18 1 13.0186 2.1938 0.7020 19 6 3.4726 -1.2043 -0.0064 20 17 4.2695 -2.7465 -0.0146 21 7 2.1556 -1.1487 -0.0060 22 1 -0.3633 -0.0050 1.0277 23 1 -0.3634 0.8925 -0.5094 24 1 -0.3633 -0.8875 -0.5181 25 1 1.6435 2.1380 0.0005 26 1 4.1262 2.1284 0.0088 27 1 5.9804 1.9048 0.0077 28 1 8.2366 0.4517 0.8877 29 1 8.2348 0.4612 -0.8922 30 1 8.1206 2.9385 -0.8781 31 1 8.1223 2.9284 0.9018 32 1 10.6165 5.4916 0.0240 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688601124.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:34 Heat of formation + Delta-G solvation = -15.234636 kcal Electronic energy + Delta-G solvation = -17185.304366 eV Core-core repulsion = 14171.557128 eV Total energy + Delta-G solvation = -3013.747238 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.77813 -38.87305 -36.60080 -34.95545 -33.56536 -32.76648 -32.45168 -29.77206 -28.18313 -25.06010 -23.63169 -23.15943 -21.16948 -20.43951 -17.96294 -17.01179 -16.59301 -16.23852 -15.41282 -15.07588 -14.65538 -14.62654 -14.41689 -13.96457 -13.35958 -13.24111 -12.79867 -12.64166 -12.51643 -12.32822 -11.53565 -11.30151 -11.17117 -11.06692 -10.66135 -10.39639 -10.19315 -10.14140 -9.73731 -9.42681 -9.14938 -9.08603 -8.58551 -8.39602 -6.12849 -4.15660 0.35259 0.80582 1.78334 2.86753 3.27767 3.33609 3.36404 3.44071 3.62562 4.05198 4.32182 4.39066 4.53339 4.65979 4.88216 5.08632 5.19719 5.22296 5.24586 5.57226 5.61035 5.69092 6.11083 6.28691 6.30091 6.68123 6.80092 7.40348 7.46546 7.56193 7.84675 7.87966 8.23065 8.50578 8.90173 9.49508 10.98767 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.032614 B = 0.003775 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.309751 B = 7415.954625 C = 8248.515679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.160 3.840 3 C -0.178 4.178 4 C -0.029 4.029 5 C -0.173 4.173 6 C 0.547 3.453 7 O -0.521 6.521 8 N -0.714 5.714 9 C 0.122 3.878 10 C 0.012 3.988 11 C -0.522 4.522 12 H 0.060 0.940 13 C 0.059 3.941 14 N -0.894 5.894 15 Si 0.897 3.103 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.272 1.272 19 C 0.225 3.775 20 Cl 0.010 6.990 21 N -0.486 5.486 22 H 0.084 0.916 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.148 0.852 26 H 0.151 0.849 27 H 0.395 0.605 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.023 0.977 31 H 0.023 0.977 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.410 -5.600 -0.005 20.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.022 3.978 3 C -0.198 4.198 4 C -0.055 4.055 5 C -0.179 4.179 6 C 0.332 3.668 7 O -0.398 6.398 8 N -0.365 5.365 9 C 0.001 3.999 10 C -0.025 4.025 11 C -0.561 4.561 12 H 0.078 0.922 13 C -0.142 4.142 14 N -0.533 5.533 15 Si 0.725 3.275 16 H -0.205 1.205 17 H -0.212 1.212 18 H -0.197 1.197 19 C 0.060 3.940 20 Cl 0.039 6.961 21 N -0.199 5.199 22 H 0.103 0.897 23 H 0.100 0.900 24 H 0.100 0.900 25 H 0.166 0.834 26 H 0.169 0.831 27 H 0.229 0.771 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.317 -7.102 -0.009 20.581 hybrid contribution 1.339 1.227 0.006 1.816 sum -17.978 -5.875 -0.003 18.914 Atomic orbital electron populations 1.20808 0.87839 1.04048 1.03663 1.21423 0.97242 0.87279 0.91815 1.21996 0.94517 0.99692 1.03597 1.21876 0.94655 0.97261 0.91693 1.20811 0.95984 0.93251 1.07871 1.17852 0.85517 0.85181 0.78279 1.90847 1.71802 1.27963 1.49161 1.46249 1.09222 1.07548 1.73469 1.21789 0.75302 1.01698 1.01144 1.19334 0.96274 0.89066 0.97855 1.21041 0.90766 0.92846 1.51408 0.92175 1.24990 0.98972 0.95359 0.94927 1.69948 1.35696 0.97324 1.50355 0.86506 0.85122 0.77690 0.78220 1.20538 1.21162 1.19690 1.21814 0.88950 0.88515 0.94726 1.98460 1.76541 1.25658 1.95464 1.66990 1.07909 1.30092 1.14872 0.89741 0.90028 0.89998 0.83390 0.83111 0.77079 0.92204 0.92203 0.95918 0.95906 0.92823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 10.16 36.01 0.37 -0.29 16 2 C 0.16 1.61 6.78 -82.51 -0.56 1.05 16 3 C -0.18 -1.57 9.72 -39.50 -0.38 -1.95 16 4 C -0.03 -0.31 9.65 -38.87 -0.37 -0.68 16 5 C -0.17 -2.48 5.89 -104.79 -0.62 -3.10 16 6 C 0.55 9.48 7.77 -12.37 -0.10 9.38 16 7 O -0.52 -10.55 14.00 5.31 0.07 -10.48 16 8 N -0.71 -12.17 5.51 -61.27 -0.34 -12.51 16 9 C 0.12 2.54 5.61 -4.04 -0.02 2.51 16 10 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 11 C -0.52 -14.25 9.11 -34.44 -0.31 -14.56 16 12 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -25.71 13.29 55.43 0.74 -24.97 16 15 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 19 C 0.23 3.35 7.31 -17.01 -0.12 3.22 16 20 Cl 0.01 0.15 26.20 -51.86 -1.36 -1.21 16 21 N -0.49 -6.45 10.24 -6.28 -0.06 -6.51 16 22 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.08 0.33 8.07 -51.93 -0.42 -0.09 16 24 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.15 0.79 8.06 -52.48 -0.42 0.37 16 26 H 0.15 1.27 6.52 -52.49 -0.34 0.93 16 27 H 0.39 5.64 6.58 -40.82 -0.27 5.37 16 28 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 LS Contribution 296.77 15.07 4.47 4.47 Total: -1.00 -31.99 296.77 -7.39 -39.38 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: -3.53 Total: -1.60 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -2.37 Total: -2.71 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: 0.33 Total: -43.99 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.07 Total: -10.48 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 17 Polarization: 0.15 SS G_CDS: -1.36 Total: -1.21 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.99 -7.39 -39.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688601124.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.146 kcal (2) G-P(sol) polarization free energy of solvation -31.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds