Wall clock time and date at job start Mon Mar 30 2020 08:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42895 * 114.00275 * 2 1 4 4 C 1.50696 * 109.47455 * 179.97438 * 3 2 1 5 5 C 1.33394 * 122.53721 * 90.02272 * 4 3 2 6 6 S 1.75885 * 109.59194 * 180.02562 * 5 4 3 7 7 C 1.75880 * 90.97128 * 0.02562 * 6 5 4 8 8 C 1.50701 * 125.20155 * 179.97438 * 7 6 5 9 9 H 1.09004 * 110.41351 * 204.16469 * 8 7 6 10 10 C 1.54469 * 110.37562 * 81.85334 * 8 7 6 11 11 C 1.54505 * 104.06546 * 217.18828 * 10 8 7 12 12 C 1.54485 * 104.06202 * 0.02562 * 11 10 8 13 13 H 1.09001 * 110.46213 * 265.09981 * 12 11 10 14 14 C 1.50694 * 110.37364 * 142.80808 * 12 11 10 15 15 H 1.08000 * 120.00563 * 3.16646 * 14 12 11 16 16 C 1.37885 * 119.99902 * 183.16483 * 14 12 11 17 17 N 1.31518 * 119.99792 * 179.72330 * 16 14 12 18 18 Si 1.86795 * 120.00009 * 0.02562 * 16 14 12 19 19 H 1.48501 * 109.47088 * 89.99795 * 18 16 14 20 20 H 1.48495 * 109.47293 * 209.99997 * 18 16 14 21 21 H 1.48507 * 109.47015 * 329.99955 * 18 16 14 22 22 O 1.44424 * 104.80196 * 23.97434 * 12 11 10 23 23 C 1.33381 * 109.59437 * 0.22586 * 7 6 5 24 24 H 1.09001 * 109.47430 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47339 * 300.00342 * 1 2 3 26 26 H 1.09004 * 109.47069 * 60.00855 * 1 2 3 27 27 H 1.09004 * 109.47266 * 59.99402 * 3 2 1 28 28 H 1.09000 * 109.47075 * 300.00085 * 3 2 1 29 29 H 1.08002 * 125.20491 * 359.97438 * 5 4 3 30 30 H 1.08999 * 110.51475 * 335.83380 * 10 8 7 31 31 H 1.09002 * 110.51584 * 98.54480 * 10 8 7 32 32 H 1.08998 * 110.51581 * 241.36032 * 11 10 8 33 33 H 1.09004 * 110.51542 * 118.64449 * 11 10 8 34 34 H 0.97000 * 119.99468 * 179.97438 * 17 16 14 35 35 H 1.08000 * 122.54372 * 179.75770 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.2282 1.1300 -1.1236 6 16 5.9368 0.9938 -0.7289 7 6 5.5722 1.0212 0.9915 8 6 6.5927 0.9385 2.0972 9 1 6.1352 0.5547 3.0090 10 6 7.2213 2.3260 2.3539 11 6 8.7019 2.0154 2.6677 12 6 8.7929 0.4768 2.5628 13 1 8.6738 0.0202 3.5454 14 6 10.1090 0.0695 1.9522 15 1 10.8461 0.8200 1.7075 16 6 10.3723 -1.2614 1.7060 17 7 11.5187 -1.6163 1.1680 18 14 9.0972 -2.5594 2.1285 19 1 8.2057 -2.7761 0.9609 20 1 9.7813 -3.8320 2.4719 21 1 8.2910 -2.1021 3.2888 22 8 7.6994 0.1005 1.6977 23 6 4.2538 1.1209 1.1678 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8901 27 1 1.6885 1.8464 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.8208 1.1621 -2.1233 30 1 7.1425 2.9515 1.4647 31 1 6.7438 2.8100 3.2059 32 1 8.9563 2.3456 3.6748 33 1 9.3551 2.4871 1.9336 34 1 11.7041 -2.5526 0.9951 35 1 3.7993 1.1513 2.1470 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695491730.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:12:19 Heat of formation + Delta-G solvation = -56.019020 kcal Electronic energy + Delta-G solvation = -18042.635120 eV Core-core repulsion = 15132.703388 eV Total energy + Delta-G solvation = -2909.931732 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.02200 -38.35007 -36.82506 -32.75123 -31.49323 -30.95678 -28.51890 -27.45034 -25.76747 -24.78196 -22.38312 -20.88243 -20.00136 -18.81165 -17.30315 -16.91737 -16.54480 -15.87862 -15.48108 -15.30189 -14.73877 -14.30852 -13.84371 -13.17644 -13.04566 -12.91083 -12.68562 -12.57038 -12.16778 -11.92659 -11.70114 -11.46949 -10.99701 -10.94001 -10.74397 -10.41543 -10.28711 -9.88066 -9.85655 -9.70031 -9.50382 -8.68529 -8.57685 -8.34583 -8.15340 -6.12250 -4.21421 1.18290 1.90412 2.32683 2.66769 3.42529 3.48643 3.58861 3.96008 4.47456 4.60456 4.92057 4.94714 5.11280 5.15359 5.20853 5.27719 5.34293 5.39452 5.42533 5.45265 5.56349 5.73559 5.92025 6.01041 6.13568 6.31545 6.41238 6.52190 6.55851 6.60862 6.67112 6.98103 7.10752 7.56522 8.02827 8.41615 8.87754 9.50338 10.97973 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.025687 B = 0.005208 C = 0.004894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.800910 B = 5374.797866 C = 5720.397104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.125 3.875 4 C -0.109 4.109 5 C -0.220 4.220 6 S 0.168 5.832 7 C -0.155 4.155 8 C 0.132 3.868 9 H 0.073 0.927 10 C -0.142 4.142 11 C -0.135 4.135 12 C 0.165 3.835 13 H 0.032 0.968 14 C -0.517 4.517 15 H 0.082 0.918 16 C 0.084 3.916 17 N -0.890 5.890 18 Si 0.899 3.101 19 H -0.272 1.272 20 H -0.298 1.298 21 H -0.268 1.268 22 O -0.370 6.370 23 C -0.136 4.136 24 H 0.085 0.915 25 H 0.040 0.960 26 H 0.039 0.961 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.160 0.840 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.266 0.734 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.436 7.513 -1.314 20.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.047 3.953 4 C -0.123 4.123 5 C -0.356 4.356 6 S 0.435 5.565 7 C -0.273 4.273 8 C 0.071 3.929 9 H 0.091 0.909 10 C -0.180 4.180 11 C -0.173 4.173 12 C 0.110 3.890 13 H 0.050 0.950 14 C -0.554 4.554 15 H 0.100 0.900 16 C -0.120 4.120 17 N -0.528 5.528 18 Si 0.727 3.273 19 H -0.198 1.198 20 H -0.225 1.225 21 H -0.193 1.193 22 O -0.291 6.291 23 C -0.166 4.166 24 H 0.103 0.897 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.178 0.822 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -17.837 6.941 -2.422 19.292 hybrid contribution -2.171 -0.302 1.071 2.440 sum -20.008 6.640 -1.351 21.124 Atomic orbital electron populations 1.22741 0.81341 1.02743 0.99795 1.88019 1.19243 1.27748 1.95336 1.20998 0.89099 0.84763 1.00452 1.18411 0.94806 1.06620 0.92444 1.25685 0.98205 1.09689 1.02034 1.84774 1.02915 1.69369 0.99473 1.24547 0.97261 1.07491 0.98012 1.21193 0.87815 0.91834 0.92019 0.90917 1.22956 0.97106 0.96532 1.01440 1.22873 0.94235 0.99052 1.01134 1.21154 0.86613 0.90205 0.91054 0.95032 1.20953 0.97092 0.93761 1.43568 0.90048 1.25052 0.94931 0.98963 0.93087 1.69921 1.23086 1.17706 1.42042 0.86448 0.81234 0.79567 0.80029 1.19775 1.22528 1.19255 1.89381 1.20440 1.59245 1.60026 1.19727 0.91918 1.05841 0.99098 0.89669 0.94127 0.94194 0.92510 0.92671 0.82225 0.91319 0.91456 0.92007 0.90885 0.92402 0.84631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.90 10.69 -35.23 -0.38 -5.28 16 3 C 0.13 1.42 6.19 36.00 0.22 1.64 16 4 C -0.11 -1.54 5.43 -106.25 -0.58 -2.12 16 5 C -0.22 -3.10 10.98 29.04 0.32 -2.78 16 6 S 0.17 2.86 23.05 -107.50 -2.48 0.38 16 7 C -0.16 -2.72 5.45 -36.00 -0.20 -2.92 16 8 C 0.13 2.50 3.73 -27.11 -0.10 2.40 16 9 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 10 C -0.14 -2.40 6.62 -25.17 -0.17 -2.57 16 11 C -0.14 -2.66 6.62 -25.16 -0.17 -2.83 16 12 C 0.16 3.99 2.51 -27.11 -0.07 3.92 16 13 H 0.03 0.77 7.29 -51.93 -0.38 0.40 16 14 C -0.52 -14.79 9.36 -34.44 -0.32 -15.11 16 15 H 0.08 2.46 7.84 -52.49 -0.41 2.05 16 16 C 0.08 2.50 5.47 -17.82 -0.10 2.40 16 17 N -0.89 -27.47 13.96 55.43 0.77 -26.70 16 18 Si 0.90 23.54 26.31 -169.99 -4.47 19.07 16 19 H -0.27 -7.29 7.11 56.52 0.40 -6.88 16 20 H -0.30 -7.62 7.11 56.52 0.40 -7.21 16 21 H -0.27 -6.78 6.57 56.52 0.37 -6.40 16 22 O -0.37 -8.91 8.66 -35.23 -0.31 -9.21 16 23 C -0.14 -2.08 9.85 -41.21 -0.41 -2.48 16 24 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 28 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16 29 H 0.16 1.83 8.06 -52.49 -0.42 1.41 16 30 H 0.07 1.13 7.86 -51.93 -0.41 0.72 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.07 1.49 7.72 -51.93 -0.40 1.09 16 34 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 35 H 0.14 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 306.90 15.07 4.62 4.62 Total: -1.00 -32.41 306.90 -7.67 -40.09 By element: Atomic # 1 Polarization: 1.10 SS G_CDS: -4.99 Total: -3.89 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -0.45 Total: -19.08 kcal Atomic # 7 Polarization: -27.47 SS G_CDS: 0.77 Total: -26.70 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.68 Total: -14.49 kcal Atomic # 14 Polarization: 23.54 SS G_CDS: -4.47 Total: 19.07 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -2.48 Total: 0.38 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.41 -7.67 -40.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695491730.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.934 kcal (2) G-P(sol) polarization free energy of solvation -32.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds