Wall clock time and date at job start Mon Mar 30 2020 08:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 114.00097 * 2 1 4 4 C 1.50703 * 109.46825 * 180.02562 * 3 2 1 5 5 C 1.33391 * 122.53808 * 89.98194 * 4 3 2 6 6 S 1.75879 * 109.59197 * 179.97438 * 5 4 3 7 7 C 1.75890 * 90.97192 * 359.97438 * 6 5 4 8 8 C 1.50695 * 125.20369 * 179.97438 * 7 6 5 9 9 H 1.09000 * 110.35772 * 204.33286 * 8 7 6 10 10 C 1.55503 * 110.28603 * 82.22415 * 8 7 6 11 11 C 1.55305 * 100.69731 * 204.65124 * 10 8 7 12 12 C 1.54382 * 102.43395 * 34.13038 * 11 10 8 13 13 H 1.09009 * 109.82643 * 98.05629 * 12 11 10 14 14 C 1.50699 * 109.83066 * 219.02306 * 12 11 10 15 15 H 1.08006 * 119.99747 * 0.02562 * 14 12 11 16 16 C 1.37876 * 120.00153 * 180.02562 * 14 12 11 17 17 N 1.31508 * 120.00014 * 0.02562 * 16 14 12 18 18 Si 1.86797 * 119.99940 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47330 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47382 * 120.00070 * 18 16 14 21 21 H 1.48503 * 109.47074 * 240.00015 * 18 16 14 22 22 O 1.43232 * 107.59109 * 338.54226 * 12 11 10 23 23 C 1.33391 * 109.59066 * 0.22792 * 7 6 5 24 24 H 1.08995 * 109.47048 * 59.99820 * 1 2 3 25 25 H 1.09002 * 109.46960 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46675 * 300.00320 * 1 2 3 27 27 H 1.08993 * 109.47125 * 59.99878 * 3 2 1 28 28 H 1.08998 * 109.46617 * 299.99998 * 3 2 1 29 29 H 1.07999 * 125.20401 * 359.96650 * 5 4 3 30 30 H 1.09007 * 111.32681 * 86.77723 * 10 8 7 31 31 H 1.08995 * 111.14910 * 322.45486 * 10 8 7 32 32 H 1.09002 * 110.85041 * 275.83884 * 11 10 8 33 33 H 1.09001 * 110.84389 * 152.42021 * 11 10 8 34 34 H 0.97005 * 120.00196 * 180.02562 * 17 16 14 35 35 H 1.07999 * 122.53381 * 179.74917 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.2273 1.1296 -1.1255 6 16 5.9363 0.9949 -0.7322 7 6 5.5733 1.0250 0.9886 8 6 6.5949 0.9447 2.0935 9 1 6.1381 0.5593 3.0050 10 6 7.2191 2.3450 2.3535 11 6 8.5856 1.9413 2.9713 12 6 8.9215 0.6392 2.2131 13 1 9.6062 0.8551 1.3928 14 6 9.5489 -0.3545 3.1566 15 1 9.6973 -0.0944 4.1943 16 6 9.9333 -1.5955 2.6951 17 7 9.7530 -1.9120 1.4315 18 14 10.7102 -2.8274 3.8648 19 1 10.8022 -2.2315 5.2219 20 1 9.8753 -4.0543 3.9179 21 1 12.0716 -3.1756 3.3843 22 8 7.6949 0.1107 1.6959 23 6 4.2550 1.1243 1.1660 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6887 1.8464 0.8899 28 1 1.6886 1.8463 -0.8900 29 1 3.8190 1.1612 -2.1248 30 1 6.6222 2.9198 3.0617 31 1 7.3559 2.8937 1.4217 32 1 8.4876 1.7534 4.0405 33 1 9.3384 2.7063 2.7810 34 1 10.0231 -2.7853 1.1068 35 1 3.8015 1.1560 2.1456 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695491731.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:12:22 Heat of formation + Delta-G solvation = -59.080351 kcal Electronic energy + Delta-G solvation = -17941.293196 eV Core-core repulsion = 15031.228715 eV Total energy + Delta-G solvation = -2910.064482 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.81791 -38.09099 -36.67591 -32.70285 -31.13721 -30.75238 -28.18540 -27.20044 -25.67216 -24.67727 -22.32711 -20.46785 -20.20645 -18.73629 -17.01698 -16.50577 -16.45449 -15.90767 -15.30825 -15.16941 -14.68860 -14.09592 -13.66645 -13.12507 -12.84860 -12.72172 -12.35745 -12.24521 -11.94299 -11.73095 -11.66550 -11.35344 -10.90748 -10.74995 -10.59008 -10.46634 -10.24857 -10.18128 -9.84537 -9.76737 -9.22383 -8.53875 -8.28332 -8.03078 -7.84338 -5.96810 -4.11232 1.33409 2.05430 2.47012 2.81767 3.31714 3.39799 3.42783 4.06172 4.44768 4.81742 5.01327 5.07223 5.20655 5.24588 5.32073 5.38375 5.44666 5.50099 5.51125 5.56631 5.77706 5.89152 6.16514 6.18819 6.30903 6.49499 6.56792 6.66242 6.69805 6.79050 6.83585 7.07278 7.62630 7.90058 8.28198 8.55762 9.03551 9.60754 11.09757 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.025490 B = 0.004631 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.219613 B = 6044.755855 C = 6365.193169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.126 3.874 4 C -0.107 4.107 5 C -0.224 4.224 6 S 0.159 5.841 7 C -0.148 4.148 8 C 0.139 3.861 9 H 0.073 0.927 10 C -0.146 4.146 11 C -0.145 4.145 12 C 0.205 3.795 13 H 0.040 0.960 14 C -0.546 4.546 15 H 0.060 0.940 16 C 0.080 3.920 17 N -0.861 5.861 18 Si 0.889 3.111 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.283 1.283 22 O -0.349 6.349 23 C -0.143 4.143 24 H 0.039 0.961 25 H 0.085 0.915 26 H 0.040 0.960 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.158 0.842 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.260 0.740 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.407 8.561 -3.452 17.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.047 3.953 4 C -0.121 4.121 5 C -0.360 4.360 6 S 0.426 5.574 7 C -0.266 4.266 8 C 0.078 3.922 9 H 0.091 0.909 10 C -0.184 4.184 11 C -0.183 4.183 12 C 0.150 3.850 13 H 0.058 0.942 14 C -0.583 4.583 15 H 0.078 0.922 16 C -0.126 4.126 17 N -0.497 5.497 18 Si 0.716 3.284 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.209 1.209 22 O -0.269 6.269 23 C -0.173 4.173 24 H 0.057 0.943 25 H 0.103 0.897 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.176 0.824 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.907 7.965 -4.595 15.848 hybrid contribution -1.172 -0.326 1.530 1.955 sum -14.079 7.640 -3.064 16.308 Atomic orbital electron populations 1.22735 0.81457 1.02701 0.99724 1.88033 1.19142 1.27766 1.95318 1.21002 0.89246 0.84727 1.00315 1.18406 0.94675 1.06470 0.92526 1.25611 0.98205 1.10357 1.01871 1.84607 1.03100 1.69622 1.00074 1.24908 0.97644 1.06151 0.97922 1.21238 0.88308 0.91056 0.91562 0.90919 1.23361 0.97620 0.96624 1.00807 1.23225 0.94878 0.99271 1.00879 1.20341 0.83061 0.88846 0.92758 0.94217 1.21409 1.40881 1.00164 0.95896 0.92170 1.25058 0.94505 0.98195 0.94890 1.70040 1.44729 1.21086 1.13832 0.86614 0.78926 0.81501 0.81341 1.19701 1.20863 1.20918 1.88846 1.14225 1.48577 1.75237 1.19722 0.92080 1.06471 0.98977 0.94269 0.89695 0.94165 0.92566 0.92800 0.82437 0.91362 0.91410 0.91396 0.92029 0.92984 0.84746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.38 -5.21 10.69 -35.23 -0.38 -5.59 16 3 C 0.13 1.53 6.19 36.01 0.22 1.75 16 4 C -0.11 -1.61 5.43 -106.25 -0.58 -2.19 16 5 C -0.22 -3.34 10.98 29.04 0.32 -3.03 16 6 S 0.16 2.82 23.05 -107.50 -2.48 0.34 16 7 C -0.15 -2.77 5.57 -36.00 -0.20 -2.98 16 8 C 0.14 2.88 3.89 -26.56 -0.10 2.78 16 9 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 10 C -0.15 -2.62 6.60 -24.18 -0.16 -2.78 16 11 C -0.14 -2.95 6.51 -24.78 -0.16 -3.11 16 12 C 0.21 5.28 3.35 -27.16 -0.09 5.19 16 13 H 0.04 1.11 8.14 -51.92 -0.42 0.69 16 14 C -0.55 -15.35 8.75 -34.44 -0.30 -15.65 16 15 H 0.06 1.64 7.52 -52.48 -0.39 1.25 16 16 C 0.08 2.28 5.41 -17.82 -0.10 2.18 16 17 N -0.86 -25.92 12.93 55.43 0.72 -25.20 16 18 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 O -0.35 -9.10 9.96 -35.23 -0.35 -9.45 16 23 C -0.14 -2.36 9.85 -41.21 -0.41 -2.77 16 24 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 28 H 0.05 0.54 8.12 -51.93 -0.42 0.12 16 29 H 0.16 1.92 8.06 -52.49 -0.42 1.50 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.07 1.17 8.06 -51.93 -0.42 0.75 16 32 H 0.07 1.37 7.65 -51.93 -0.40 0.97 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 35 H 0.13 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 311.91 15.07 4.70 4.70 Total: -1.00 -32.00 311.91 -8.24 -40.24 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -4.99 Total: -2.42 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: -0.44 Total: -19.21 kcal Atomic # 7 Polarization: -25.92 SS G_CDS: 0.72 Total: -25.20 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.73 Total: -15.04 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 2.82 SS G_CDS: -2.48 Total: 0.34 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.00 -8.24 -40.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695491731.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.839 kcal (2) G-P(sol) polarization free energy of solvation -31.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds