Wall clock time and date at job start Mon Mar 30 2020 08:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46932 * 2 1 4 4 C 1.52996 * 109.47201 * 239.99599 * 2 1 3 5 5 C 1.50705 * 109.47106 * 174.99536 * 4 2 1 6 6 H 1.07998 * 119.99837 * 0.02562 * 5 4 2 7 7 C 1.37873 * 119.99771 * 179.97438 * 5 4 2 8 8 N 1.31508 * 120.00297 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99692 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47048 * 90.00286 * 9 7 5 11 11 H 1.48503 * 109.47076 * 210.00069 * 9 7 5 12 12 H 1.48497 * 109.47208 * 329.99889 * 9 7 5 13 13 O 1.42900 * 109.47094 * 119.99608 * 2 1 3 14 14 C 1.35702 * 117.00158 * 275.14267 * 13 2 1 15 15 C 1.39119 * 119.88273 * 185.44895 * 14 13 2 16 16 C 1.37576 * 120.16326 * 180.02562 * 15 14 13 17 17 C 1.39876 * 119.93375 * 0.02562 * 16 15 14 18 18 C 1.47307 * 120.11778 * 179.97438 * 17 16 15 19 19 O 1.21528 * 120.00215 * 179.97438 * 18 17 16 20 20 O 1.34763 * 120.00000 * 0.02562 * 18 17 16 21 21 C 1.40047 * 119.76608 * 359.97438 * 17 16 15 22 22 F 1.35101 * 120.08262 * 179.97438 * 21 17 16 23 23 C 1.38040 * 119.83212 * 359.97438 * 21 17 16 24 24 H 1.08999 * 109.47113 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47103 * 299.99960 * 1 2 3 26 26 H 1.08998 * 109.47239 * 60.00361 * 1 2 3 27 27 H 1.08990 * 109.47539 * 295.00134 * 4 2 1 28 28 H 1.09005 * 109.46926 * 55.00325 * 4 2 1 29 29 H 0.97005 * 120.00325 * 179.97438 * 8 7 5 30 30 H 1.08001 * 119.91709 * 359.75418 * 15 14 13 31 31 H 1.08006 * 120.03528 * 179.97438 * 16 15 14 32 32 H 0.96708 * 116.99915 * 179.97438 * 20 18 17 33 33 H 1.08002 * 119.96157 * 180.02562 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5420 -0.6149 -1.3127 6 1 4.0790 -0.0860 -0.5392 7 6 4.2304 -1.1935 -2.3577 8 7 3.5765 -1.8379 -3.2993 9 14 6.0922 -1.0622 -2.4360 10 1 6.7001 -2.2147 -1.7239 11 1 6.5298 -1.0705 -3.8551 12 1 6.5268 0.2031 -1.7915 13 8 2.0063 -0.6736 1.1668 14 6 2.1095 0.0609 2.3032 15 6 2.6725 -0.5024 3.4439 16 6 2.7795 0.2368 4.5993 17 6 2.3207 1.5578 4.6276 18 6 2.4327 2.3528 5.8627 19 8 2.0339 3.5006 5.8849 20 8 2.9784 1.8077 6.9677 21 6 1.7545 2.1221 3.4777 22 9 1.3088 3.3973 3.4981 23 6 1.6529 1.3720 2.3234 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.7517 -1.7715 -1.2055 28 1 1.6054 -0.2618 -2.1369 29 1 4.0609 -2.2448 -4.0347 30 1 3.0224 -1.5240 3.4236 31 1 3.2165 -0.2028 5.4838 32 1 3.0308 2.3684 7.7539 33 1 1.2169 1.8051 1.4352 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695793015.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:08:09 Heat of formation + Delta-G solvation = -159.514123 kcal Electronic energy + Delta-G solvation = -19911.198319 eV Core-core repulsion = 16430.565526 eV Total energy + Delta-G solvation = -3480.632793 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.094 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.93717 -40.42932 -39.74891 -37.25450 -36.11655 -33.65030 -31.86900 -30.92413 -30.04167 -27.60846 -24.58955 -23.49002 -23.10134 -21.37615 -20.40932 -18.47510 -18.08212 -17.17706 -16.57426 -16.48624 -16.03758 -15.83370 -15.24444 -14.80095 -14.62155 -14.41852 -13.98817 -13.87968 -13.10989 -12.90008 -12.37109 -12.16426 -11.99507 -11.94415 -11.68681 -11.53666 -11.32867 -11.04481 -10.83501 -10.64108 -10.53129 -10.21437 -9.56971 -9.24930 -9.00337 -8.47964 -8.23381 -6.10899 -4.13535 0.64757 1.12435 2.48707 2.89248 3.27616 3.34178 3.37536 3.47256 3.61287 4.07118 4.38529 4.59916 4.93499 4.96891 5.11713 5.26354 5.40825 5.44466 5.55320 5.77575 5.88766 5.93749 5.98320 6.06346 6.21656 6.34656 6.45268 6.54245 6.58221 7.31180 7.42665 7.79043 7.80174 7.84529 8.22627 8.89748 9.50940 11.00277 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.024544 B = 0.004614 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.523100 B = 6066.622478 C = 6543.739998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.080 3.920 3 H 0.069 0.931 4 C 0.026 3.974 5 C -0.520 4.520 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.893 3.107 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.274 1.274 13 O -0.274 6.274 14 C 0.223 3.777 15 C -0.186 4.186 16 C 0.006 3.994 17 C -0.230 4.230 18 C 0.533 3.467 19 O -0.515 6.515 20 O -0.514 6.514 21 C 0.209 3.791 22 F -0.116 7.116 23 C -0.272 4.272 24 H 0.065 0.935 25 H 0.050 0.950 26 H 0.072 0.928 27 H 0.031 0.969 28 H 0.042 0.958 29 H 0.262 0.738 30 H 0.147 0.853 31 H 0.150 0.850 32 H 0.412 0.588 33 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.646 4.018 15.472 16.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.025 3.975 3 H 0.087 0.913 4 C -0.011 4.011 5 C -0.558 4.558 6 H 0.074 0.926 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.721 3.279 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.199 1.199 13 O -0.184 6.184 14 C 0.172 3.828 15 C -0.205 4.205 16 C -0.013 4.013 17 C -0.233 4.233 18 C 0.378 3.622 19 O -0.404 6.404 20 O -0.326 6.326 21 C 0.189 3.811 22 F -0.094 7.094 23 C -0.292 4.292 24 H 0.085 0.915 25 H 0.069 0.931 26 H 0.091 0.909 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.165 0.835 31 H 0.168 0.832 32 H 0.270 0.730 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.738 3.822 14.880 15.811 hybrid contribution 0.899 0.844 0.256 1.259 sum -2.840 4.666 15.136 16.092 Atomic orbital electron populations 1.22439 0.96339 1.03015 1.01917 1.23125 0.92322 0.97447 0.84628 0.91338 1.19294 0.96743 0.96592 0.88461 1.21095 0.91527 1.34958 1.08250 0.92563 1.24965 0.98582 0.95067 0.95541 1.69937 1.35710 1.35657 1.12053 0.86569 0.85525 0.78605 0.77214 1.20513 1.21165 1.19851 1.86323 1.77870 1.38038 1.16152 1.19312 0.87097 0.88565 0.87805 1.20548 1.06370 1.02597 0.90944 1.21052 0.91883 0.90605 0.97710 1.18777 1.15950 0.96877 0.91677 1.20495 0.73792 0.84738 0.83179 1.90940 1.46385 1.18550 1.84566 1.84550 1.75864 1.49482 1.22682 1.17315 0.92312 0.78906 0.92538 1.91583 1.85801 1.35178 1.96841 1.21290 1.12712 0.95805 0.99375 0.91549 0.93121 0.90877 0.95038 0.93994 0.92802 0.83525 0.83227 0.72963 0.82861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.76 9.16 37.16 0.34 -2.42 16 2 C 0.08 1.51 2.17 -26.73 -0.06 1.45 16 3 H 0.07 1.26 6.30 -51.92 -0.33 0.94 16 4 C 0.03 0.62 4.68 -27.88 -0.13 0.49 16 5 C -0.52 -13.99 8.88 -34.44 -0.31 -14.30 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 8 N -0.89 -25.77 13.29 55.43 0.74 -25.04 16 9 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 13 O -0.27 -5.17 9.54 -18.81 -0.18 -5.35 16 14 C 0.22 3.56 6.61 -39.03 -0.26 3.30 16 15 C -0.19 -2.50 9.96 -39.50 -0.39 -2.89 16 16 C 0.01 0.07 9.60 -39.21 -0.38 -0.31 16 17 C -0.23 -3.18 5.88 -104.92 -0.62 -3.80 16 18 C 0.53 7.08 8.26 34.42 0.28 7.36 16 19 O -0.51 -8.38 16.12 -19.29 -0.31 -8.69 16 20 O -0.51 -4.75 12.67 -40.66 -0.52 -5.26 16 21 C 0.21 3.19 7.28 -38.98 -0.28 2.90 16 22 F -0.12 -1.90 15.54 2.25 0.03 -1.87 16 23 C -0.27 -4.15 8.19 -39.43 -0.32 -4.47 16 24 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.05 0.69 6.89 -51.93 -0.36 0.33 16 26 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 31 H 0.15 1.35 7.60 -52.48 -0.40 0.95 16 32 H 0.41 1.89 9.11 45.56 0.42 2.31 16 33 H 0.15 2.24 5.39 -52.49 -0.28 1.95 16 LS Contribution 296.13 15.07 4.46 4.46 Total: -1.00 -31.62 296.13 -5.62 -37.24 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -2.61 Total: -0.49 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -2.22 Total: -11.13 kcal Atomic # 7 Polarization: -25.77 SS G_CDS: 0.74 Total: -25.04 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -1.01 Total: -19.31 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.03 Total: -1.87 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.62 -5.62 -37.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695793015.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.274 kcal (2) G-P(sol) polarization free energy of solvation -31.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds