Wall clock time and date at job start Mon Mar 30 2020 08:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46932 * 2 1 4 4 C 1.52996 * 109.47201 * 239.99599 * 2 1 3 5 5 C 1.50705 * 109.47106 * 174.99536 * 4 2 1 6 6 H 1.07998 * 119.99837 * 0.02562 * 5 4 2 7 7 C 1.37873 * 119.99771 * 179.97438 * 5 4 2 8 8 N 1.31508 * 120.00297 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99692 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47048 * 90.00286 * 9 7 5 11 11 H 1.48503 * 109.47076 * 210.00069 * 9 7 5 12 12 H 1.48497 * 109.47208 * 329.99889 * 9 7 5 13 13 O 1.42900 * 109.47094 * 119.99608 * 2 1 3 14 14 C 1.35702 * 117.00158 * 275.14267 * 13 2 1 15 15 C 1.39119 * 119.88273 * 185.44895 * 14 13 2 16 16 C 1.37576 * 120.16326 * 180.02562 * 15 14 13 17 17 C 1.39876 * 119.93375 * 0.02562 * 16 15 14 18 18 C 1.47307 * 120.11778 * 179.97438 * 17 16 15 19 19 O 1.21528 * 120.00215 * 179.97438 * 18 17 16 20 20 O 1.34763 * 120.00000 * 0.02562 * 18 17 16 21 21 C 1.40047 * 119.76608 * 359.97438 * 17 16 15 22 22 F 1.35101 * 120.08262 * 179.97438 * 21 17 16 23 23 C 1.38040 * 119.83212 * 359.97438 * 21 17 16 24 24 H 1.08999 * 109.47113 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47103 * 299.99960 * 1 2 3 26 26 H 1.08998 * 109.47239 * 60.00361 * 1 2 3 27 27 H 1.08990 * 109.47539 * 295.00134 * 4 2 1 28 28 H 1.09005 * 109.46926 * 55.00325 * 4 2 1 29 29 H 0.97005 * 120.00325 * 179.97438 * 8 7 5 30 30 H 1.08001 * 119.91709 * 359.75418 * 15 14 13 31 31 H 1.08006 * 120.03528 * 179.97438 * 16 15 14 32 32 H 0.96708 * 116.99915 * 179.97438 * 20 18 17 33 33 H 1.08002 * 119.96157 * 180.02562 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5420 -0.6149 -1.3127 6 1 4.0790 -0.0860 -0.5392 7 6 4.2304 -1.1935 -2.3577 8 7 3.5765 -1.8379 -3.2993 9 14 6.0922 -1.0622 -2.4360 10 1 6.7001 -2.2147 -1.7239 11 1 6.5298 -1.0705 -3.8551 12 1 6.5268 0.2031 -1.7915 13 8 2.0063 -0.6736 1.1668 14 6 2.1095 0.0609 2.3032 15 6 2.6725 -0.5024 3.4439 16 6 2.7795 0.2368 4.5993 17 6 2.3207 1.5578 4.6276 18 6 2.4327 2.3528 5.8627 19 8 2.0339 3.5006 5.8849 20 8 2.9784 1.8077 6.9677 21 6 1.7545 2.1221 3.4777 22 9 1.3088 3.3973 3.4981 23 6 1.6529 1.3720 2.3234 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.7517 -1.7715 -1.2055 28 1 1.6054 -0.2618 -2.1369 29 1 4.0609 -2.2448 -4.0347 30 1 3.0224 -1.5240 3.4236 31 1 3.2165 -0.2028 5.4838 32 1 3.0308 2.3684 7.7539 33 1 1.2169 1.8051 1.4352 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695793015.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:08:08 Heat of formation + Delta-G solvation = -179.501074 kcal Electronic energy + Delta-G solvation = -19912.065018 eV Core-core repulsion = 16430.565526 eV Total energy + Delta-G solvation = -3481.499492 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.094 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.13656 -41.55205 -40.89598 -38.46490 -37.05456 -35.49319 -33.55795 -32.05220 -31.21360 -29.38498 -25.83504 -25.01914 -24.45440 -22.44781 -21.86109 -19.68707 -19.10948 -18.53434 -18.22430 -17.80552 -17.16392 -17.03701 -16.56325 -16.33793 -16.04478 -15.58925 -15.31357 -14.99281 -14.47978 -14.18182 -13.82130 -13.66039 -13.40775 -13.34221 -13.12917 -12.79897 -12.65378 -12.57353 -12.41947 -12.19971 -11.82410 -11.71504 -11.37427 -11.12210 -10.58392 -10.11659 -9.44133 -8.20899 -6.30072 -0.46972 0.03693 1.41001 1.41371 1.42631 1.51944 1.97424 2.19787 2.40874 2.51060 2.93798 3.14459 3.51718 3.78076 3.93986 4.01661 4.11044 4.16540 4.35705 4.46953 4.75294 4.78261 4.90298 4.98683 5.01565 5.13414 5.18399 5.33841 5.43617 5.54681 5.57802 5.76196 6.16266 6.41223 6.81803 6.95714 7.38165 8.90600 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.024544 B = 0.004614 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.523100 B = 6066.622478 C = 6543.739998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.088 3.912 3 H 0.070 0.930 4 C 0.028 3.972 5 C -0.533 4.533 6 H 0.054 0.946 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.957 3.043 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.267 1.267 13 O -0.297 6.297 14 C 0.198 3.802 15 C -0.182 4.182 16 C 0.026 3.974 17 C -0.231 4.231 18 C 0.540 3.460 19 O -0.550 6.550 20 O -0.496 6.496 21 C 0.191 3.809 22 F -0.127 7.127 23 C -0.272 4.272 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.005 0.995 28 H 0.027 0.973 29 H 0.264 0.736 30 H 0.163 0.837 31 H 0.188 0.812 32 H 0.435 0.565 33 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.691 4.041 17.598 18.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.033 3.967 3 H 0.088 0.912 4 C -0.009 4.009 5 C -0.571 4.571 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.570 5.570 9 Si 0.782 3.218 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.192 1.192 13 O -0.209 6.209 14 C 0.149 3.851 15 C -0.201 4.201 16 C 0.008 3.992 17 C -0.234 4.234 18 C 0.386 3.614 19 O -0.443 6.443 20 O -0.310 6.310 21 C 0.171 3.829 22 F -0.105 7.105 23 C -0.291 4.291 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.101 0.899 27 H 0.023 0.977 28 H 0.045 0.955 29 H 0.073 0.927 30 H 0.180 0.820 31 H 0.205 0.795 32 H 0.297 0.703 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.777 3.846 17.053 17.700 hybrid contribution 0.620 0.831 -0.259 1.069 sum -2.156 4.677 16.794 17.566 Atomic orbital electron populations 1.22349 0.93649 1.03368 1.03420 1.22786 0.94329 0.96361 0.83232 0.91179 1.19130 0.95517 0.95444 0.90792 1.21470 0.93187 1.34476 1.08008 0.92764 1.25806 1.03226 0.94821 0.95283 1.70051 1.37497 1.36700 1.12737 0.85565 0.80029 0.78836 0.77365 1.19846 1.20711 1.19167 1.86239 1.79058 1.38778 1.16823 1.19562 0.88891 0.88958 0.87651 1.20835 1.05347 1.03442 0.90434 1.21386 0.90221 0.89354 0.98203 1.19041 1.15071 0.97667 0.91597 1.20362 0.73235 0.83976 0.83807 1.90938 1.48016 1.20044 1.85253 1.84487 1.74490 1.49430 1.22612 1.17495 0.93392 0.78688 0.93278 1.91553 1.86138 1.35918 1.96930 1.21263 1.12640 0.95660 0.99557 0.91768 0.91046 0.89882 0.97675 0.95496 0.92685 0.81960 0.79521 0.70275 0.82871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.17 9.16 71.98 0.66 -4.51 16 2 C 0.09 3.37 2.17 30.59 0.07 3.43 16 3 H 0.07 2.61 6.30 -2.38 -0.02 2.60 16 4 C 0.03 1.38 4.68 29.85 0.14 1.52 16 5 C -0.53 -29.14 8.88 25.60 0.23 -28.91 16 6 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 7 C 0.01 0.38 5.46 84.65 0.46 0.84 16 8 N -0.93 -54.52 13.29 21.44 0.28 -54.24 16 9 Si 0.96 43.38 29.54 68.60 2.03 45.40 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 12 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 13 O -0.30 -11.22 9.54 -90.22 -0.86 -12.09 16 14 C 0.20 6.15 6.61 22.63 0.15 6.30 16 15 C -0.18 -4.47 9.96 22.32 0.22 -4.24 16 16 C 0.03 0.53 9.60 22.51 0.22 0.75 16 17 C -0.23 -5.85 5.88 -20.06 -0.12 -5.97 16 18 C 0.54 12.97 8.26 70.21 0.58 13.55 16 19 O -0.55 -17.12 16.12 19.75 0.32 -16.80 16 20 O -0.50 -7.23 12.67 -56.73 -0.72 -7.95 16 21 C 0.19 5.64 7.28 22.66 0.16 5.81 16 22 F -0.13 -4.13 15.54 44.97 0.70 -3.44 16 23 C -0.27 -8.10 8.19 22.37 0.18 -7.92 16 24 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.07 1.86 6.89 -2.39 -0.02 1.84 16 26 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 28 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 29 H 0.26 14.62 8.31 -92.70 -0.77 13.85 16 30 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16 31 H 0.19 2.40 7.60 -2.91 -0.02 2.38 16 32 H 0.43 2.31 9.11 -74.05 -0.67 1.64 16 33 H 0.15 4.44 5.39 -2.91 -0.02 4.42 16 Total: -1.00 -68.84 296.13 5.18 -63.66 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: 0.48 Total: 4.79 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: 2.95 Total: -19.34 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: 0.28 Total: -54.24 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -1.26 Total: -36.84 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.70 Total: -3.44 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -68.84 5.18 -63.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695793015.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.841 kcal (2) G-P(sol) polarization free energy of solvation -68.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds