Wall clock time and date at job start Mon Mar 30 2020 08:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.46708 * 2 1 4 4 C 1.53002 * 109.47233 * 239.99843 * 2 1 3 5 5 C 1.50700 * 109.46943 * 175.00229 * 4 2 1 6 6 H 1.07999 * 119.99735 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99677 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00253 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99832 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47129 * 59.99734 * 9 7 5 11 11 H 1.48496 * 109.46904 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46805 * 299.99855 * 9 7 5 13 13 O 1.42899 * 109.46830 * 119.99595 * 2 1 3 14 14 C 1.35636 * 116.99888 * 275.06436 * 13 2 1 15 15 C 1.38621 * 120.14750 * 5.48062 * 14 13 2 16 16 C 1.38133 * 120.16784 * 180.25995 * 15 14 13 17 17 C 1.38418 * 120.44702 * 359.75955 * 16 15 14 18 18 C 1.38119 * 120.28035 * 359.96255 * 17 16 15 19 19 F 1.35095 * 120.08695 * 179.97438 * 18 17 16 20 20 C 1.40029 * 119.82762 * 0.02562 * 18 17 16 21 21 C 1.47243 * 120.21788 * 180.02562 * 20 18 17 22 22 O 1.21533 * 119.99742 * 89.99976 * 21 20 18 23 23 O 1.34763 * 120.00265 * 269.72454 * 21 20 18 24 24 H 1.09005 * 109.46971 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47477 * 300.00170 * 1 2 3 26 26 H 1.09000 * 109.47073 * 60.00333 * 1 2 3 27 27 H 1.08999 * 109.47121 * 294.99971 * 4 2 1 28 28 H 1.09003 * 109.47077 * 54.99935 * 4 2 1 29 29 H 0.97004 * 119.99786 * 179.97438 * 8 7 5 30 30 H 1.08011 * 119.91656 * 0.02562 * 15 14 13 31 31 H 1.08006 * 119.77551 * 179.74615 * 16 15 14 32 32 H 1.08004 * 119.86448 * 179.97438 * 17 16 15 33 33 H 0.96700 * 116.99565 * 0.27257 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5420 -0.6150 -1.3126 6 1 4.0789 -0.0855 -0.5395 7 6 4.2304 -1.1927 -2.3582 8 7 3.5764 -1.8370 -3.2999 9 14 6.0921 -1.0603 -2.4372 10 1 6.6846 -1.6864 -1.2280 11 1 6.5871 -1.7605 -3.6496 12 1 6.4844 0.3707 -2.4965 13 8 2.0063 -0.6736 1.1668 14 6 2.1109 0.0610 2.3023 15 6 1.6577 1.3708 2.3283 16 6 1.7689 2.1210 3.4829 17 6 2.3280 1.5729 4.6243 18 6 2.7804 0.2679 4.6207 19 9 3.3259 -0.2629 5.7368 20 6 2.6732 -0.5032 3.4568 21 6 3.1521 -1.8955 3.4434 22 8 2.3985 -2.8002 3.7444 23 8 4.4245 -2.1671 3.0922 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.7517 -1.7715 -1.2055 28 1 1.6054 -0.2618 -2.1370 29 1 4.0608 -2.2432 -4.0357 30 1 1.2199 1.8070 1.4425 31 1 1.4175 3.1422 3.4949 32 1 2.4108 2.1681 5.5217 33 1 4.9862 -1.4146 2.8611 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695793423.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:07:41 Heat of formation + Delta-G solvation = -176.044595 kcal Electronic energy + Delta-G solvation = -20521.763559 eV Core-core repulsion = 17040.413951 eV Total energy + Delta-G solvation = -3481.349608 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.094 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.20606 -41.76564 -40.52128 -38.48181 -37.60342 -35.51111 -33.63897 -32.08944 -30.86578 -29.37584 -25.72256 -25.35348 -24.18820 -22.93204 -21.73810 -20.27082 -19.07339 -18.56329 -18.08808 -17.69048 -17.36050 -16.81299 -16.61999 -16.18090 -16.10817 -16.04953 -15.45880 -14.96175 -14.61609 -14.17540 -13.90058 -13.64175 -13.51052 -13.25368 -12.92293 -12.85806 -12.72415 -12.62414 -12.51388 -12.28714 -11.85499 -11.57005 -11.29959 -11.11488 -10.58862 -10.12134 -9.36750 -8.21334 -6.31133 -0.23434 0.15798 0.91353 1.39693 1.43123 1.49719 2.01866 2.20773 2.39549 2.40208 3.11664 3.17044 3.36083 3.80229 3.87192 3.90073 4.04262 4.18945 4.26808 4.42075 4.67438 4.76961 4.92867 4.97048 5.09674 5.18486 5.25877 5.34493 5.43032 5.65489 5.74786 6.04171 6.14449 6.40902 6.61627 6.81058 7.37131 8.90281 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.018477 B = 0.006497 C = 0.005727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.009172 B = 4308.967726 C = 4888.248924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.094 3.906 3 H 0.090 0.910 4 C 0.025 3.975 5 C -0.532 4.532 6 H 0.061 0.939 7 C 0.002 3.998 8 N -0.933 5.933 9 Si 0.958 3.042 10 H -0.270 1.270 11 H -0.287 1.287 12 H -0.259 1.259 13 O -0.319 6.319 14 C 0.190 3.810 15 C -0.224 4.224 16 C -0.005 4.005 17 C -0.184 4.184 18 C 0.163 3.837 19 F -0.135 7.135 20 C -0.278 4.278 21 C 0.563 3.437 22 O -0.508 6.508 23 O -0.504 6.504 24 H 0.047 0.953 25 H 0.080 0.920 26 H 0.089 0.911 27 H -0.011 1.011 28 H 0.031 0.969 29 H 0.263 0.737 30 H 0.161 0.839 31 H 0.189 0.811 32 H 0.178 0.822 33 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.466 13.499 13.887 19.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.039 3.961 3 H 0.107 0.893 4 C -0.012 4.012 5 C -0.570 4.570 6 H 0.080 0.920 7 C -0.196 4.196 8 N -0.573 5.573 9 Si 0.783 3.217 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.184 1.184 13 O -0.231 6.231 14 C 0.142 3.858 15 C -0.242 4.242 16 C -0.023 4.023 17 C -0.203 4.203 18 C 0.143 3.857 19 F -0.114 7.114 20 C -0.281 4.281 21 C 0.404 3.596 22 O -0.396 6.396 23 O -0.317 6.317 24 H 0.066 0.934 25 H 0.099 0.901 26 H 0.108 0.892 27 H 0.008 0.992 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.179 0.821 31 H 0.206 0.794 32 H 0.196 0.804 33 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges -2.899 12.185 13.946 18.745 hybrid contribution 1.240 -0.342 -0.570 1.407 sum -1.659 11.843 13.376 17.942 Atomic orbital electron populations 1.22372 0.93847 1.02703 1.03993 1.22820 0.94202 0.96821 0.82263 0.89272 1.19157 0.95897 0.94848 0.91289 1.21458 0.92992 1.34549 1.07970 0.92039 1.25901 1.03535 0.94805 0.95375 1.70069 1.37715 1.36755 1.12787 0.85600 0.79628 0.78985 0.77525 1.19556 1.21271 1.18371 1.86201 1.79759 1.39837 1.17335 1.19013 0.90641 0.91141 0.85012 1.21707 1.07334 0.92470 1.02702 1.21488 0.90786 1.01004 0.89017 1.21354 1.03992 0.92329 1.02622 1.17435 0.95791 0.92489 0.79956 1.91524 1.83109 1.87016 1.49704 1.19358 1.17359 0.95574 0.95811 1.20179 0.80219 0.88078 0.71134 1.90804 1.52708 1.50530 1.45554 1.84452 1.23287 1.44983 1.78935 0.93417 0.90130 0.89249 0.99219 0.95065 0.92810 0.82147 0.79392 0.80419 0.70052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.14 9.17 71.98 0.66 -4.48 16 2 C 0.09 3.50 2.17 30.60 0.07 3.57 16 3 H 0.09 2.91 6.31 -2.39 -0.02 2.90 16 4 C 0.02 1.25 4.68 29.85 0.14 1.39 16 5 C -0.53 -28.85 8.88 25.60 0.23 -28.63 16 6 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 7 C 0.00 0.10 5.46 84.65 0.46 0.56 16 8 N -0.93 -55.86 13.29 21.45 0.28 -55.58 16 9 Si 0.96 43.18 29.54 68.60 2.03 45.20 16 10 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 11 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 13 O -0.32 -12.84 9.00 -89.50 -0.81 -13.65 16 14 C 0.19 6.03 6.61 22.85 0.15 6.19 16 15 C -0.22 -4.93 8.23 22.34 0.18 -4.74 16 16 C -0.01 -0.08 10.02 22.29 0.22 0.15 16 17 C -0.18 -3.02 10.00 22.28 0.22 -2.80 16 18 C 0.16 4.07 7.29 22.68 0.17 4.23 16 19 F -0.14 -3.56 16.83 44.97 0.76 -2.81 16 20 C -0.28 -8.82 5.57 -19.98 -0.11 -8.93 16 21 C 0.56 21.86 7.01 70.19 0.49 22.35 16 22 O -0.51 -23.78 17.95 19.73 0.35 -23.43 16 23 O -0.50 -17.42 13.48 -56.74 -0.77 -18.18 16 24 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 25 H 0.08 1.92 6.91 -2.39 -0.02 1.90 16 26 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 27 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 28 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 30 H 0.16 3.06 5.42 -2.90 -0.02 3.04 16 31 H 0.19 0.98 8.06 -2.91 -0.02 0.96 16 32 H 0.18 1.66 8.06 -2.91 -0.02 1.63 16 33 H 0.44 10.11 8.96 -74.06 -0.66 9.45 16 Total: -1.00 -76.32 298.85 5.23 -71.09 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: 0.49 Total: 8.50 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: 2.88 Total: -11.15 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: 0.28 Total: -55.58 kcal Atomic # 8 Polarization: -54.04 SS G_CDS: -1.22 Total: -55.26 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.76 Total: -2.81 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -76.32 5.23 -71.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695793423.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.953 kcal (2) G-P(sol) polarization free energy of solvation -76.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds