Wall clock time and date at job start Mon Mar 30 2020 06:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.46857 * 2 1 4 4 C 1.53006 * 109.46893 * 119.99477 * 2 1 3 5 5 C 1.50695 * 109.47033 * 184.99940 * 4 2 1 6 6 H 1.08006 * 120.00316 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00092 * 179.72826 * 5 4 2 8 8 N 1.31519 * 120.00336 * 180.27621 * 7 5 4 9 9 Si 1.86804 * 119.99966 * 0.27539 * 7 5 4 10 10 H 1.48506 * 109.47058 * 90.00119 * 9 7 5 11 11 H 1.48497 * 109.47036 * 210.00100 * 9 7 5 12 12 H 1.48498 * 109.46936 * 330.00112 * 9 7 5 13 13 O 1.42892 * 109.47083 * 239.99813 * 2 1 3 14 14 C 1.35685 * 117.00140 * 84.89315 * 13 2 1 15 15 C 1.39054 * 119.88857 * 354.53037 * 14 13 2 16 16 C 1.37594 * 120.12845 * 180.02562 * 15 14 13 17 17 C 1.40042 * 119.90770 * 359.97438 * 16 15 14 18 18 C 1.46864 * 120.10874 * 179.97438 * 17 16 15 19 19 O 1.21287 * 120.00135 * 0.02562 * 18 17 16 20 20 C 1.40029 * 119.78165 * 0.02562 * 17 16 15 21 21 C 1.37714 * 119.86589 * 359.71801 * 20 17 16 22 22 Cl 1.73595 * 119.95155 * 180.29772 * 21 20 17 23 23 H 1.09007 * 109.47209 * 60.00289 * 1 2 3 24 24 H 1.09003 * 109.47423 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47393 * 300.00000 * 1 2 3 26 26 H 1.09002 * 109.46627 * 65.00348 * 4 2 1 27 27 H 1.08999 * 109.47194 * 305.00333 * 4 2 1 28 28 H 0.97001 * 120.00114 * 179.97438 * 8 7 5 29 29 H 1.07998 * 119.93279 * 0.02562 * 15 14 13 30 30 H 1.08005 * 120.04339 * 180.02562 * 16 15 14 31 31 H 1.07995 * 119.99517 * 180.02562 * 18 17 16 32 32 H 1.07992 * 120.06894 * 179.97438 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5418 -0.6149 1.3129 6 1 4.0789 -0.0855 0.5397 7 6 4.2298 -1.1881 2.3612 8 7 5.5401 -1.0907 2.4195 9 14 3.3008 -2.1032 3.6988 10 1 3.1756 -3.5347 3.3238 11 1 4.0410 -1.9904 4.9812 12 1 1.9476 -1.5120 3.8546 13 8 2.0063 -0.6736 -1.1667 14 6 2.1101 0.0608 -2.3028 15 6 1.6531 1.3739 -2.3233 16 6 1.7556 2.1230 -3.4729 17 6 2.3217 1.5615 -4.6241 18 6 2.4327 2.3569 -5.8537 19 8 2.0341 3.5022 -5.8732 20 6 2.7807 0.2388 -4.5992 21 6 2.6785 -0.5009 -3.4421 22 17 3.2539 -2.1384 -3.4066 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.7516 -1.7714 1.2057 27 1 1.6053 -0.2616 2.1370 28 1 6.0240 -1.4937 3.1572 29 1 1.2170 1.8066 -1.4351 30 1 1.4005 3.1430 -3.4871 31 1 2.8693 1.9218 -6.7405 32 1 3.2177 -0.1990 -5.4844 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695807213.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:55 Heat of formation + Delta-G solvation = -80.105411 kcal Electronic energy + Delta-G solvation = -17703.906183 eV Core-core repulsion = 14655.053185 eV Total energy + Delta-G solvation = -3048.852997 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.47691 -40.08395 -38.43738 -37.25726 -35.45003 -33.72012 -32.12426 -31.15198 -29.83554 -25.83950 -24.79907 -24.30348 -22.15902 -21.49969 -19.47846 -18.91899 -17.95472 -17.30812 -16.52510 -16.41073 -15.98370 -15.90150 -15.24237 -15.16547 -14.94357 -14.61579 -14.20318 -13.99135 -13.67734 -13.53289 -13.38735 -12.95065 -12.57769 -12.38108 -12.27409 -11.96079 -11.84032 -11.71840 -11.42720 -11.29700 -10.78425 -10.76005 -10.01274 -9.22668 -8.27687 -6.31725 -0.36332 0.10109 1.18320 1.36849 1.38204 1.43642 1.48778 2.20471 2.36247 2.65862 3.08766 3.37971 3.65450 3.76348 3.97941 4.07403 4.14192 4.24105 4.35725 4.51580 4.63857 4.77600 4.87322 4.89818 5.02013 5.09771 5.17956 5.24546 5.31217 5.53395 5.61603 6.23009 6.40180 6.51823 6.73864 7.30961 8.89434 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.023718 B = 0.005216 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.267757 B = 5366.491674 C = 5742.287639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.091 3.909 3 H 0.068 0.932 4 C -0.010 4.010 5 C -0.521 4.521 6 H 0.026 0.974 7 C 0.004 3.996 8 N -0.952 5.952 9 Si 0.949 3.051 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.237 1.237 13 O -0.300 6.300 14 C 0.165 3.835 15 C -0.226 4.226 16 C -0.017 4.017 17 C -0.239 4.239 18 C 0.404 3.596 19 O -0.507 6.507 20 C -0.005 4.005 21 C -0.114 4.114 22 Cl -0.064 7.064 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.091 0.909 26 H 0.025 0.975 27 H 0.055 0.945 28 H 0.265 0.735 29 H 0.151 0.849 30 H 0.147 0.853 31 H 0.159 0.841 32 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.412 2.698 -14.036 17.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.035 3.965 3 H 0.086 0.914 4 C -0.047 4.047 5 C -0.559 4.559 6 H 0.044 0.956 7 C -0.192 4.192 8 N -0.593 5.593 9 Si 0.772 3.228 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.160 1.160 13 O -0.212 6.212 14 C 0.116 3.884 15 C -0.244 4.244 16 C -0.036 4.036 17 C -0.240 4.240 18 C 0.266 3.734 19 O -0.383 6.383 20 C -0.024 4.024 21 C -0.141 4.141 22 Cl -0.035 7.035 23 H 0.090 0.910 24 H 0.084 0.916 25 H 0.109 0.891 26 H 0.043 0.957 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.168 0.832 30 H 0.165 0.835 31 H 0.175 0.825 32 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -10.397 2.903 -13.881 17.584 hybrid contribution 0.388 -0.658 1.127 1.361 sum -10.009 2.246 -12.754 16.367 Atomic orbital electron populations 1.22367 0.92848 1.03609 1.03881 1.22656 0.94618 0.96283 0.82914 0.91378 1.19711 0.94743 0.96971 0.93319 1.21249 0.92058 1.34572 1.07978 0.95603 1.25989 0.95570 0.96896 1.00772 1.70079 1.08710 1.47081 1.33417 0.85687 0.80081 0.79241 0.77803 1.19769 1.21118 1.15959 1.86238 1.79448 1.38756 1.16796 1.19579 0.91205 0.90973 0.86619 1.21436 1.08379 0.93088 1.01534 1.21482 0.91621 0.99724 0.90748 1.21013 1.08647 0.95902 0.98471 1.24442 0.72936 0.85446 0.90596 1.90528 1.40125 1.21211 1.86448 1.21405 0.93159 0.91692 0.96122 1.20414 1.09183 0.89335 0.95163 1.98369 1.87599 1.18837 1.98737 0.91003 0.91593 0.89066 0.95660 0.92670 0.92619 0.83183 0.83484 0.82489 0.79899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.60 9.16 71.98 0.66 -3.94 16 2 C 0.09 3.36 2.17 30.60 0.07 3.42 16 3 H 0.07 2.51 6.30 -2.39 -0.02 2.50 16 4 C -0.01 -0.46 3.75 29.85 0.11 -0.35 16 5 C -0.52 -29.76 9.43 25.60 0.24 -29.51 16 6 H 0.03 1.66 7.99 -2.91 -0.02 1.64 16 7 C 0.00 0.25 5.47 84.65 0.46 0.71 16 8 N -0.95 -60.16 13.96 21.45 0.30 -59.86 16 9 Si 0.95 43.52 27.47 68.60 1.88 45.41 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 12 H -0.24 -9.64 6.54 99.48 0.65 -8.99 16 13 O -0.30 -12.00 8.99 -90.03 -0.81 -12.81 16 14 C 0.17 5.59 6.61 22.69 0.15 5.74 16 15 C -0.23 -6.42 8.21 22.31 0.18 -6.24 16 16 C -0.02 -0.43 9.59 22.56 0.22 -0.21 16 17 C -0.24 -5.04 5.87 -20.15 -0.12 -5.16 16 18 C 0.40 6.75 11.44 70.08 0.80 7.55 16 19 O -0.51 -12.63 17.16 -3.05 -0.05 -12.68 16 20 C -0.01 -0.11 9.56 22.58 0.22 0.10 16 21 C -0.11 -3.42 6.32 22.37 0.14 -3.28 16 22 Cl -0.06 -2.06 28.49 -2.72 -0.08 -2.14 16 23 H 0.07 1.69 6.89 -2.38 -0.02 1.67 16 24 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 26 H 0.03 1.13 7.58 -2.39 -0.02 1.11 16 27 H 0.06 2.30 7.19 -2.39 -0.02 2.28 16 28 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 29 H 0.15 3.95 5.40 -2.91 -0.02 3.93 16 30 H 0.15 3.25 7.64 -2.91 -0.02 3.23 16 31 H 0.16 1.00 8.06 -2.91 -0.02 0.97 16 32 H 0.18 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -73.09 294.09 5.46 -67.64 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: 1.08 Total: 5.60 kcal Atomic # 6 Polarization: -34.30 SS G_CDS: 3.13 Total: -31.16 kcal Atomic # 7 Polarization: -60.16 SS G_CDS: 0.30 Total: -59.86 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.86 Total: -25.49 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.88 Total: 45.41 kcal Atomic # 17 Polarization: -2.06 SS G_CDS: -0.08 Total: -2.14 kcal Total: -73.09 5.46 -67.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695807213.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.470 kcal (2) G-P(sol) polarization free energy of solvation -73.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds